Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 2.6e-68 261.9 133 100.0
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 4.1e-61 238.0 125 96.0
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 3.4e-60 235.0 124 96.0
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 1.3e-59 233.0 124 95.2
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 2.2e-59 232.3 124 94.4
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 3.9e-56 221.5 120 91.7
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 8.8e-56 220.3 120 90.8
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 3.4e-31 138.7 88 81.8
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 3.4e-31 138.7 88 81.8
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 7.5e-31 137.5 88 78.4
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 9.7e-31 137.1 88 80.7
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 2.8e-30 135.6 88 77.3
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 2.8e-30 135.6 88 79.5
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-29 133.7 89 79.8
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.4e-29 133.3 88 76.1
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 7.0e-29 131.0 80 85.0
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 7.0e-29 131.0 83 80.7
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 2.0e-28 129.4 90 76.7
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 2.0e-28 129.4 88 77.3
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 2.7e-28 129.0 88 75.0
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 2.7e-28 129.0 88 75.0
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 3.5e-28 128.6 88 77.3
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 4.5e-28 128.3 88 77.3
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 2.2e-27 125.9 89 75.3
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.2e-27 125.9 88 77.3
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 2.1e-25 119.4 81 72.8
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 6.3e-22 107.8 88 67.0
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 7.2e-18 94.4 88 58.0
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 7.2e-18 94.4 88 54.5
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.8e-16 89.7 88 55.7
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 3.0e-16 89.0 88 52.3
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 4.0e-16 88.6 88 51.1
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 8.9e-16 87.4 83 54.2
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 2.6e-15 85.9 102 50.0
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 2.6e-15 85.9 90 53.3
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.6e-15 85.9 90 52.2
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 3.4e-15 85.5 88 48.9
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 3.4e-15 85.5 88 52.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 3.4e-15 85.5 91 52.7
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 4.4e-15 85.1 88 52.3
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 4.4e-15 85.1 88 52.3
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 4.4e-15 85.1 88 51.1
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 5.7e-15 84.7 89 53.9
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 5.7e-15 84.7 88 50.0
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 7.5e-15 84.3 88 47.7
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 7.5e-15 84.3 85 56.5
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 7.5e-15 84.3 91 51.6
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 9.8e-15 84.0 88 52.3
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.3e-14 83.6 90 46.7
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.3e-14 83.6 90 46.7
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.3e-14 83.6 99 48.5
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.3e-14 83.6 88 52.3
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.8e-14 82.4 83 51.8
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 2.8e-14 82.4 83 51.8
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.8e-14 82.4 88 48.9
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.8e-14 82.4 85 55.3
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.7e-14 82.0 111 45.0
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.7e-14 82.0 95 51.6
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 4.9e-14 81.6 88 47.7
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 4.9e-14 81.6 93 50.5
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 6.3e-14 81.3 95 51.6
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.3e-14 81.3 95 51.6
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.1e-13 80.5 102 44.1
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.1e-13 80.5 88 52.3
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.1e-13 80.5 88 48.9
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.1e-13 80.5 95 50.5
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.8e-13 79.7 88 51.1
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.4e-13 79.3 95 50.5
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 2.4e-13 79.3 102 42.2
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 4.1e-13 78.6 88 47.7
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 5.4e-13 78.2 80 55.0
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 5.4e-13 78.2 103 44.7
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 5.4e-13 78.2 102 42.2
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 7.0e-13 77.8 88 50.0
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 7.0e-13 77.8 88 50.0
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 9.2e-13 77.4 95 50.5
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.2e-12 77.0 84 50.0
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.2e-12 77.0 138 34.1
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.6e-12 76.6 88 48.9
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 2.0e-12 76.3 83 50.6
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.0e-12 76.3 104 42.3
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 3.5e-12 75.5 90 47.8
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 3.5e-12 75.5 83 49.4
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 3.5e-12 75.5 119 42.9
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 4.5e-12 75.1 79 49.4
BraA07t31724Z Brassica rapa HOM05D000493 ORTHO05D001355 4.5e-12 75.1 37 91.9
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 4.5e-12 75.1 90 48.9
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 4.5e-12 75.1 84 47.6
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 5.9e-12 74.7 88 45.5
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 5.9e-12 74.7 77 49.4
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 7.8e-12 74.3 118 39.8
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.0e-11 73.9 102 42.2
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.3e-11 73.6 88 45.5
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.3e-11 73.6 88 46.6
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.7e-11 73.2 88 43.2
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.7e-11 73.2 85 47.1
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 2.3e-11 72.8 68 50.0
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.9e-11 72.4 95 40.0
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 2.9e-11 72.4 88 42.0
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 3.9e-11 72.0 81 46.9
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.9e-11 72.0 88 42.0
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 3.9e-11 72.0 81 49.4
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 5.0e-11 71.6 88 42.0
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.6e-11 71.2 121 36.4
BcaC08g47130 Brassica carinata HOM05D000493 ORTHO05D001355 1.9e-10 69.7 37 86.5
A07p41940 Brassica napus HOM05D000493 ORTHO05D001355 1.9e-10 69.7 38 89.5
C06p50510 Brassica napus HOM05D000493 ORTHO05D001355 1.9e-10 69.7 38 89.5
BolC6t40076H Brassica oleracea HOM05D000493 ORTHO05D001355 1.9e-10 69.7 38 89.5
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.9e-10 69.7 93 43.0
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.3e-10 68.6 81 40.7
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 5.6e-10 68.2 83 47.0
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 7.3e-10 67.8 57 56.1
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 9.5e-10 67.4 88 45.5
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 1.2e-09 67.0 84 42.9
CARHR069870 Cardamine hirsuta HOM05D000493 ORTHO05D001355 3.6e-09 65.5 37 81.1
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 4.7e-09 65.1 75 44.0
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 1.0e-08 63.9 86 40.7
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.4e-08 63.5 54 53.7
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 3.1e-08 62.4 81 44.4
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 3.1e-08 62.4 109 36.7
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 3.1e-08 62.4 88 40.9
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 4.0e-08 62.0 88 42.0
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 6.8e-08 61.2 93 37.6
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 6.8e-08 61.2 69 43.5
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 8.9e-08 60.8 90 37.8
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 1.5e-07 60.1 69 42.0
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.0e-07 59.7 70 44.3
Sp5g31450 Schrenkiella parvula HOM05D000493 ORTHO05D001355 2.6e-07 59.3 37 78.4
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 3.4e-07 58.9 97 36.1
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 4.4e-07 58.5 88 38.6
AL2G36410 Arabidopsis lyrata HOM05D000493 ORTHO05D001355 7.5e-07 57.8 36 77.8
BraA07t30496Z Brassica rapa HOM05D000493 ORTHO05D001355 7.5e-07 57.8 81 43.2
AT1G76310 Arabidopsis thaliana HOM05D000493 ORTHO05D001355 9.8e-07 57.4 37 78.4
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 9.8e-07 57.4 75 38.7
BcaB02g07058 Brassica carinata HOM05D000493 ORTHO05D001355 1.7e-06 56.6 38 71.1
A07p28570 Brassica napus HOM05D000493 ORTHO05D001355 1.7e-06 56.6 81 43.2
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 2.9e-06 55.8 60 48.3
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 2.9e-06 55.8 60 48.3
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.9e-06 55.8 62 43.5
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 2.9e-06 55.8 56 51.8
AL9U10600 Arabidopsis lyrata HOM05D000493 ORTHO05D023616 3.7e-06 55.5 33 78.8
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 4.9e-06 55.1 45 57.8
BcaC08g45535 Brassica carinata HOM05D000493 ORTHO05D001355 6.4e-06 54.7 38 71.1
C06p32110 Brassica napus HOM05D000493 ORTHO05D001355 6.4e-06 54.7 38 71.1
BolC6t38337H Brassica oleracea HOM05D000493 ORTHO05D001355 6.4e-06 54.7 38 71.1
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 6.4e-06 54.7 87 41.4
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 8.3e-06 54.3 63 41.3


User provided reference genes

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