Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09030 Brassica carinata HOM05D008814 ORTHO05D010812 1.8e-53 212.2 102 100.0
A04p09340 Brassica napus HOM05D008814 ORTHO05D010812 1.8e-53 212.2 102 100.0
BolSC28t60310H Brassica oleracea HOM05D008814 ORTHO05D010812 1.8e-53 212.2 102 100.0
BolSC28t60366H Brassica oleracea HOM05D008814 ORTHO05D010812 1.8e-53 212.2 102 100.0
BraSC48t46234Z Brassica rapa HOM05D008814 ORTHO05D010812 1.8e-53 212.2 102 100.0
BcaC09g49585 Brassica carinata HOM05D008814 ORTHO05D010812 5.3e-53 210.7 102 99.0
C01p34890 Brassica napus HOM05D008814 ORTHO05D010812 2.7e-49 198.4 102 93.1
C01p34810 Brassica napus HOM05D008814 ORTHO05D010812 6.1e-49 197.2 102 92.2
CAN.G960.18 Capsicum annuum HOM05D008814 ORTHO05D010812 1.4e-40 169.5 101 84.2
Solyc00g500343.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 2.6e-39 165.2 101 83.2
CAN.G1109.2 Capsicum annuum HOM05D008814 ORTHO05D010812 3.3e-39 164.9 101 81.2
GSVIVG01005452001 Vitis vinifera HOM05D008814 ORTHO05D010812 5.7e-39 164.1 94 85.1
Solyc08g036500.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 8.2e-38 160.2 101 80.2
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.3e-35 152.9 77 94.8
CAN.G1.21 Capsicum annuum HOM05D008814 ORTHO05D010812 1.7e-35 152.5 101 77.2
Nn117s43415 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.5e-31 139.4 72 91.7
Nn1g10110 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.5e-31 139.4 72 91.7
Nn1g10192 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.5e-31 139.4 72 91.7
CsaV3_7G023800 Cucumis sativus L. HOM05D008814 ORTHO05D010812 1.3e-30 136.3 72 88.9
BraSC48t46322Z Brassica rapa HOM05D005210 ORTHO05D010286 2.8e-30 135.2 63 100.0
PGSC0003DMG400033609 Solanum tuberosum HOM05D008814 ORTHO05D010812 4.8e-30 134.4 77 85.7
SHI29301 Sapria himalayana HOM05D008814 ORTHO05D010812 3.5e-28 128.3 84 75.0
SHI04841 Sapria himalayana HOM05D008814 ORTHO05D010812 1.5e-26 122.9 96 67.7
Nitab4.5_0014940g0030 Nicotiana tabacum HOM05D008814 ORTHO05D010812 2.1e-25 119.0 101 65.3
Nitab4.5_0000172g1910 Nicotiana tabacum HOM05D008814 ORTHO05D010812 3.0e-24 115.2 80 68.8
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 7.5e-23 110.5 92 63.0
Sopen05g009620 Solanum pennellii HOM05D008814 ORTHO05D010812 3.7e-22 108.2 82 65.9
MELO3C027941.2 Cucumis melo HOM05D008814 ORTHO05D010812 2.4e-21 105.5 57 86.0
BcaC02g09031 Brassica carinata HOM05D008814 ORTHO05D010812 1.2e-20 103.2 64 76.6
CAN.G85.24 Capsicum annuum HOM05D005210 ORTHO05D010286 3.5e-20 101.7 57 82.5
Nn2g10474 Nelumbo nucifera HOM05D008814 ORTHO05D010812 3.5e-20 101.7 86 59.3
Nn1g09507 Nelumbo nucifera HOM05D008814 ORTHO05D010812 2.9e-19 98.6 62 77.4
Nn8g40503 Nelumbo nucifera HOM05D008814 ORTHO05D010812 5.0e-19 97.8 62 75.8
Lj2P1215T12 Lonicera japonica HOM05D008814 ORTHO05D010812 3.3e-18 95.1 59 76.3
Solyc08g036535.1 Solanum lycopersicum HOM05D018954 ORTHO05D010812 8.0e-17 90.5 63 73.0
Peaxi162Scf01120g00002 Petunia axillaris HOM05D008814 ORTHO05D010812 4.4e-15 84.7 105 51.4
MELO3C013036.2 Cucumis melo HOM05D008814 ORTHO05D010812 5.8e-15 84.3 53 73.6
COL.COLO4_04435 Corchorus olitorius HOM05D018954 ORTHO05D010812 1.7e-14 82.8 64 68.8
COL.COLO4_04461 Corchorus olitorius HOM05D018954 ORTHO05D010812 1.7e-14 82.8 64 68.8
COL.COLO4_04488 Corchorus olitorius HOM05D018954 ORTHO05D010812 1.7e-14 82.8 64 68.8
ATR0987G010 Amborella trichopoda HOM05D008814 ORTHO05D010812 1.1e-13 80.1 53 79.2
Lsat_1_v5_gn_0_34981 Lactuca sativa HOM05D005210 ORTHO05D010286 7.0e-13 77.4 46 82.6
ECA039G0011 Erigeron canadensis HOM05D005210 ORTHO05D010286 1.7e-11 72.8 44 81.8
Lsat_1_v5_gn_2_41741 Lactuca sativa HOM05D005210 ORTHO05D010286 1.7e-11 72.8 44 81.8
Lsat_1_v5_gn_5_16200 Lactuca sativa HOM05D005210 ORTHO05D010286 1.7e-11 72.8 44 81.8
Lsat_1_v5_gn_6_2961 Lactuca sativa HOM05D005210 ORTHO05D010286 1.7e-11 72.8 44 81.8
Nn1g10191 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.7e-11 72.8 55 63.6
Nitab4.5_0000478g0040 Nicotiana tabacum HOM05D008814 ORTHO05D010812 2.3e-11 72.4 38 89.5
Thhalv10023031m.g Eutrema salsugineum HOM05D005210 ORTHO05D010286 3.3e-10 68.6 60 60.0
Lsat_1_v5_gn_5_16401 Lactuca sativa HOM05D005210 ORTHO05D010286 1.6e-09 66.2 44 72.7
ATMG00660 Arabidopsis thaliana HOM05D005210 ORTHO05D010286 2.8e-09 65.5 56 62.5
Nitab4.5_0000059g0490 Nicotiana tabacum HOM05D008814 ORTHO05D010812 8.0e-09 63.9 53 56.6
CARHR283020 Cardamine hirsuta HOM05D005210 ORTHO05D010286 1.1e-08 63.5 31 93.5
Sopen11g014320 Solanum pennellii HOM05D005210 ORTHO05D010286 1.2e-07 60.1 61 50.8
TPR.G32938 Trifolium pratense HOM05D000951 ORTHO05D003644 7.5e-07 57.4 61 47.5
Manes.16G058078 Manihot esculenta HOM05D005210 ORTHO05D010286 9.8e-07 57.0 40 72.5


User provided reference genes

Program Settings