Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09019 Brassica carinata HOM05D005983 ORTHO05D007438 2.3e-125 452.2 221 100.0
C04p39670 Brassica napus HOM05D005983 ORTHO05D007438 1.7e-120 436.0 212 100.0
BolC4t25537H Brassica oleracea HOM05D005983 ORTHO05D007438 1.7e-120 436.0 212 100.0
C09p44540 Brassica napus HOM05D005983 ORTHO05D007438 5.4e-119 431.0 215 97.7
BcaC09g50403 Brassica carinata HOM05D005983 ORTHO05D007438 1.4e-77 293.5 223 70.9
C01p25880 Brassica napus HOM05D005983 ORTHO05D007438 1.4e-77 293.5 223 70.9
BolC1t02533H Brassica oleracea HOM05D005983 ORTHO05D007438 1.4e-77 293.5 223 70.9
A01p20580 Brassica napus HOM05D005983 ORTHO05D007438 3.9e-77 292.0 223 70.4
BraA01t01986Z Brassica rapa HOM05D005983 ORTHO05D007438 3.9e-77 292.0 223 70.4
Sp7g15340 Schrenkiella parvula HOM05D005983 ORTHO05D007438 5.7e-76 288.1 223 69.1
BcaNung00159 Brassica carinata HOM05D005983 ORTHO05D007438 1.7e-75 286.6 223 70.4
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 2.6e-73 279.3 223 66.4
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 2.2e-72 276.2 224 67.0
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 2.9e-72 275.8 223 66.4
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 5.5e-71 271.6 223 65.0
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 7.0e-66 254.6 231 60.2
BcaC03g14715 Brassica carinata HOM05D005983 ORTHO05D007438 6.5e-64 248.1 178 73.0
C02p21550 Brassica napus HOM05D005983 ORTHO05D007438 3.0e-61 239.2 213 61.5
BolC2t08295H Brassica oleracea HOM05D005983 ORTHO05D007438 1.1e-60 237.3 210 61.9
THA.LOC104815498 Tarenaya hassleriana HOM05D005983 ORTHO05D007438 7.5e-60 234.6 223 57.0
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 5.0e-56 221.9 232 53.4
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 5.0e-56 221.9 245 51.8
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 6.5e-56 221.5 245 51.4
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 6.5e-56 221.5 233 51.9
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 1.1e-55 220.7 227 55.5
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 1.5e-55 220.3 234 53.4
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 3.2e-55 219.2 247 49.4
BraA08t34844Z Brassica rapa HOM05D005983 ORTHO05D007438 5.5e-55 218.4 201 59.2
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 5.5e-55 218.4 236 53.0
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 7.2e-55 218.0 234 51.7
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 9.4e-55 217.6 241 51.9
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 9.4e-55 217.6 227 52.4
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 9.4e-55 217.6 247 49.4
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 1.2e-54 217.2 226 53.5
Manes.01G082200 Manihot esculenta HOM05D005983 ORTHO05D007438 4.7e-54 215.3 227 53.3
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 6.1e-54 214.9 227 52.0
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 6.1e-54 214.9 227 52.9
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 6.1e-54 214.9 227 52.9
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 1.0e-53 214.2 239 52.3
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 1.4e-53 213.8 241 51.0
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 1.4e-53 213.8 227 52.4
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 1.8e-53 213.4 225 54.2
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 1.8e-53 213.4 225 52.0
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 1.8e-53 213.4 228 52.6
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 1.8e-53 213.4 227 52.4
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 2.3e-53 213.0 227 52.0
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 3.0e-53 212.6 239 52.3
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 6.8e-53 211.5 239 51.9
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 6.8e-53 211.5 242 50.0
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 1.5e-52 210.3 225 51.6
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 1.5e-52 210.3 228 53.9
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 1.5e-52 210.3 239 51.5
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.5e-52 210.3 239 51.5
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 4.4e-52 208.8 227 50.2
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 5.7e-52 208.4 225 52.9
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 7.5e-52 208.0 227 51.1
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 9.8e-52 207.6 227 51.1
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 9.8e-52 207.6 230 51.3
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 9.8e-52 207.6 243 48.6
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 9.8e-52 207.6 227 52.9
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 9.8e-52 207.6 227 53.7
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 1.3e-51 207.2 239 49.4
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 1.3e-51 207.2 236 49.6
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 1.3e-51 207.2 228 51.8
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 1.7e-51 206.8 228 50.9
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 1.7e-51 206.8 223 51.1
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 2.2e-51 206.5 145 73.8
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 3.7e-51 205.7 226 50.9
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 4.8e-51 205.3 239 49.0
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 6.3e-51 204.9 225 51.1
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 8.3e-51 204.5 226 52.2
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 1.1e-50 204.1 260 48.1
CsaV3_5G004310 Cucumis sativus L. HOM05D005983 ORTHO05D007438 1.4e-50 203.8 228 49.6
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 1.4e-50 203.8 226 51.8
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 1.4e-50 203.8 216 54.2
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 1.8e-50 203.4 225 51.1
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 3.1e-50 202.6 227 51.1
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 3.1e-50 202.6 238 47.5
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 5.4e-50 201.8 228 51.8
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 7.0e-50 201.4 228 50.4
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 9.1e-50 201.1 226 50.4
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 1.6e-49 200.3 226 50.9
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 3.5e-49 199.1 239 48.1
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 5.9e-49 198.4 228 49.1
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 7.7e-49 198.0 241 49.0
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 1.3e-48 197.2 240 50.4
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 1.7e-48 196.8 230 49.1
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 2.9e-48 196.1 242 49.2
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 6.5e-48 194.9 173 57.8
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 1.1e-47 194.1 174 58.6
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 3.2e-47 192.6 188 56.9
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 7.2e-47 191.4 173 59.0
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 9.5e-47 191.0 218 50.5
HPP92_015120 Vanilla planifolia HOM05D005983 ORTHO05D007438 1.2e-46 190.7 239 45.2
Os03g0101900 Oryza sativa ssp. japonica HOM05D005983 ORTHO05D007438 6.8e-45 184.9 228 45.2
CDE04G1583 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 4.9e-43 178.7 225 47.1
Actinidia14415 Actinidia chinensis HOM05D005983 ORTHO05D007438 8.3e-43 177.9 172 53.5
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 1.2e-41 174.1 325 37.5
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 2.0e-41 173.3 219 44.7
Nitab4.5_0001076g0010 Nicotiana tabacum HOM05D005983 ORTHO05D007438 1.0e-40 171.0 214 47.7
Pp3c10_660 Physcomitrium patens HOM05D005983 ORTHO05D007438 7.3e-39 164.9 223 44.8
Actinidia02144 Actinidia chinensis HOM05D005983 ORTHO05D007438 9.5e-39 164.5 137 59.1
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 8.9e-37 157.9 223 43.5
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 1.2e-36 157.5 147 56.5
Mapoly0144s0014 Marchantia polymorpha HOM05D005983 ORTHO05D007438 2.0e-36 156.8 229 42.4
CBR_g40206 Chara braunii HOM05D005983 ORTHO05D007438 1.0e-32 144.4 230 39.1
BcaC07g42540 Brassica carinata HOM05D005983 ORTHO05D007438 1.5e-31 140.6 119 62.2
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 1.8e-29 133.7 232 39.2
SMO351G0559 Selaginella moellendorffii HOM05D005983 ORTHO05D007438 4.4e-28 129.0 211 39.8
Lj2A220G36 Lonicera japonica HOM05D005983 ORTHO05D007438 4.9e-19 99.0 104 53.8
Haze_01069 Corylus avellana HOM05D005983 ORTHO05D007438 2.7e-17 93.2 110 50.0
Cfa023268 Carpinus fangiana HOM05D005983 ORTHO05D007438 3.9e-16 89.4 79 51.9
PRCOL_00002495 Prasinoderma coloniale HOM05D000251 ORTHO05D007438 9.5e-15 84.7 207 31.4
Glyma.11G034500 Glycine max HOM05D005983 ORTHO05D007438 2.8e-14 83.2 102 46.1
Haze_01067 Corylus avellana HOM05D005983 ORTHO05D007438 1.1e-10 71.2 100 45.0
vmacro00191 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 2.7e-09 66.6 79 45.6
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 2.3e-08 63.5 198 26.8
Lj2A220G37 Lonicera japonica HOM05D005983 ORTHO05D007438 7.3e-07 58.5 84 42.9


User provided reference genes

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