Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 1.6e-208 729.2 367 100.0
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 1.6e-208 729.2 367 100.0
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 1.7e-205 719.2 371 98.1
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 2.0e-203 712.2 369 97.0
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 2.0e-203 712.2 372 97.3
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 2.0e-203 712.2 372 97.3
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 1.8e-196 689.1 371 95.1
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 1.5e-193 679.5 372 93.0
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 7.0e-188 660.6 372 91.4
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 7.2e-185 650.6 372 89.5
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 1.8e-183 646.0 372 89.0
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 5.2e-183 644.4 373 89.8
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 2.0e-179 632.5 377 87.0
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 4.3e-169 598.2 377 82.8
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 4.0e-159 565.1 385 77.7
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.3e-154 549.3 374 76.7
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 7.3e-153 544.3 375 77.3
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 3.6e-152 542.0 375 77.1
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 8.9e-151 537.3 350 79.4
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.5e-150 536.6 375 76.5
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 2.0e-150 536.2 346 80.1
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.4e-150 535.4 374 75.9
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 5.8e-150 534.6 350 79.1
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 9.9e-150 533.9 376 75.3
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 4.9e-149 531.6 370 75.1
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 8.4e-149 530.8 371 76.3
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 5.4e-148 528.1 386 73.1
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 7.1e-148 527.7 370 74.9
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.2e-147 526.9 376 74.5
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 1.2e-147 526.9 377 74.5
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 1.6e-147 526.6 378 74.1
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 6.0e-147 524.6 373 75.1
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 6.0e-147 524.6 378 73.0
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 6.0e-147 524.6 374 75.1
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 7.8e-147 524.2 376 75.0
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 2.3e-146 522.7 378 74.6
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 3.9e-146 521.9 375 74.7
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 7.3e-145 517.7 378 72.8
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.2e-144 516.9 376 74.5
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 1.6e-144 516.5 371 73.9
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 1.6e-144 516.5 371 73.9
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 3.6e-144 515.4 366 74.9
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 4.7e-144 515.0 382 73.0
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 6.2e-144 514.6 388 71.6
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 6.2e-144 514.6 373 73.5
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 2.4e-143 512.7 370 74.6
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 3.1e-143 512.3 385 73.0
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 5.2e-143 511.5 361 74.5
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 1.2e-142 510.4 374 73.3
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.5e-142 510.0 367 72.8
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 2.0e-142 509.6 371 73.3
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 2.6e-142 509.2 373 73.5
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 2.6e-142 509.2 369 73.2
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 7.6e-142 507.7 364 73.4
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 9.9e-142 507.3 374 73.0
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.7e-141 506.5 373 72.9
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 4.9e-141 505.0 363 73.6
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 1.1e-140 503.8 346 76.9
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 4.2e-140 501.9 367 73.3
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 9.3e-140 500.7 371 74.1
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 1.6e-139 500.0 375 72.8
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 2.7e-139 499.2 330 78.8
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 4.6e-139 498.4 361 73.7
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 4.6e-139 498.4 354 75.1
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 1.0e-138 497.3 333 78.1
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 1.3e-138 496.9 332 78.6
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.3e-138 496.9 342 76.6
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 2.3e-138 496.1 378 70.1
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 2.3e-138 496.1 397 69.5
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 5.1e-138 495.0 377 71.6
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 1.5e-137 493.4 376 70.5
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 5.6e-137 491.5 362 72.9
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.6e-137 491.5 365 72.9
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 1.3e-136 490.3 351 73.5
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 2.1e-136 489.6 357 72.3
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 3.6e-136 488.8 365 72.3
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 4.8e-136 488.4 376 70.5
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 2.4e-135 486.1 329 77.5
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 9.0e-135 484.2 366 73.2
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.0e-134 483.0 329 77.2
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 2.6e-134 482.6 410 66.1
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 4.5e-134 481.9 374 70.3
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 2.2e-133 479.6 325 77.8
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 2.2e-133 479.6 381 67.2
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 1.1e-132 477.2 332 74.1
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 3.2e-132 475.7 378 68.5
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 6.0e-131 471.5 327 74.3
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.3e-130 470.3 349 70.8
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 3.9e-130 468.8 366 68.0
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 4.3e-129 465.3 363 70.2
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 5.6e-129 464.9 279 85.7
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 6.2e-128 461.5 351 69.8
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 8.1e-128 461.1 326 76.4
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 6.9e-127 458.0 365 67.7
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 6.9e-127 458.0 365 69.6
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 3.4e-126 455.7 321 75.4
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 1.3e-125 453.8 323 75.5
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 2.9e-125 452.6 329 72.9
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 1.9e-124 449.9 310 76.5
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 2.3e-122 443.0 284 81.3
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 2.0e-118 429.9 335 68.4
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 5.1e-114 415.2 310 69.4
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 2.1e-112 409.8 339 67.3
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 2.1e-112 409.8 291 73.2
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 1.7e-109 400.2 279 72.0
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 2.5e-108 396.4 327 63.6
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 6.1e-107 391.7 233 85.4
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 2.2e-104 383.3 282 68.4
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 2.4e-95 353.2 294 67.0
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.6e-94 349.7 323 60.1
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 6.5e-93 345.1 207 83.6
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 6.5e-85 318.5 266 62.4
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 2.7e-83 313.2 261 59.0
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 2.0e-81 307.0 254 59.4
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 4.4e-81 305.8 277 60.6
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 3.7e-80 302.8 238 69.7
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.7e-72 277.3 237 65.8
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 8.6e-69 265.0 208 70.2
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 5.2e-66 255.8 223 61.0
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 8.6e-61 238.4 158 79.1
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 1.1e-52 211.5 187 63.6
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 3.6e-51 206.5 259 49.0
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 6.2e-51 205.7 182 63.7
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 1.8e-50 204.1 188 63.3
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 2.3e-50 203.8 117 88.0
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 1.2e-49 201.4 182 63.2
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 3.2e-47 193.4 117 81.2
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 1.2e-46 191.4 137 75.9
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 2.6e-33 147.1 109 67.9
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 4.9e-32 142.9 245 36.7
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 8.4e-32 142.1 242 36.4
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 6.2e-27 125.9 158 48.1
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 5.8e-25 119.4 189 43.9
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 2.7e-22 110.5 167 40.1
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 3.5e-22 110.2 75 76.0
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 3.3e-20 103.6 242 30.6
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 8.1e-19 99.0 50 96.0
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.5e-17 93.2 74 64.9
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 2.4e-15 87.4 107 50.5
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 3.3e-12 77.0 82 52.4
AL1G61790 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.6e-06 56.6 44 68.2


User provided reference genes

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