Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08972 Brassica carinata HOM05D000022 ORTHO05D009714 2.2e-31 138.3 68 100.0
Sp7g00650 Schrenkiella parvula HOM05D000022 ORTHO05D009714 4.4e-19 97.4 61 78.7
SpUn0010_0130 Schrenkiella parvula HOM05D000022 ORTHO05D009714 4.4e-19 97.4 61 78.7
Thhalv10027847m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 9.7e-19 96.3 61 80.3
Thhalv10028233m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 1.7e-18 95.5 61 78.7
AL7G48170 Arabidopsis lyrata HOM05D000022 ORTHO05D009714 3.7e-18 94.4 61 75.4
Carub.0007s3421 Capsella rubella HOM05D000022 ORTHO05D009714 6.1e-13 77.0 61 67.2
AT5G41300 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 1.8e-12 75.5 61 62.3
AT5G41280 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 1.7e-10 68.9 64 59.4
Carub.0002s0132 Capsella rubella HOM05D000022 ORTHO05D009714 2.2e-10 68.6 61 57.4
BcaC04g22494 Brassica carinata HOM05D000022 ORTHO05D009714 6.3e-10 67.0 61 54.1
BcaB07g31576 Brassica carinata HOM05D000022 ORTHO05D009714 2.4e-09 65.1 61 55.7
Thhalv10028048m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 7.0e-09 63.5 61 54.1
Carub.0002s0127 Capsella rubella HOM05D000022 ORTHO05D009714 1.2e-08 62.8 61 52.5
C09p18700 Brassica napus HOM05D000022 ORTHO05D009714 1.6e-08 62.4 61 50.8
CARHR047770 Cardamine hirsuta HOM05D000022 ORTHO05D009714 1.6e-08 62.4 61 52.5
AT1G63600 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 2.7e-08 61.6 63 54.0
BcaB07g31405 Brassica carinata HOM05D000022 ORTHO05D009714 2.7e-08 61.6 61 49.2
Thhalv10023893m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 2.7e-08 61.6 61 50.8
CARHR213040 Cardamine hirsuta HOM05D000022 ORTHO05D009714 3.5e-08 61.2 61 55.7
AT5G41290 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 4.5e-08 60.8 61 55.7
Carub.0007s3424 Capsella rubella HOM05D000022 ORTHO05D009714 1.3e-07 59.3 61 55.7
Carub.0007s3422 Capsella rubella HOM05D000022 ORTHO05D009714 1.7e-07 58.9 62 54.8
A09p15440 Brassica napus HOM05D000022 ORTHO05D009714 2.3e-07 58.5 61 47.5
C09p16430 Brassica napus HOM05D000022 ORTHO05D009714 2.3e-07 58.5 61 50.8
BolC9t54553H Brassica oleracea HOM05D000022 ORTHO05D009714 2.3e-07 58.5 61 50.8
BraA09t37185Z Brassica rapa HOM05D000022 ORTHO05D009714 2.3e-07 58.5 61 47.5
CARHR047800 Cardamine hirsuta HOM05D000022 ORTHO05D009714 5.0e-07 57.4 61 52.5
Sp2g01040 Schrenkiella parvula HOM05D000022 ORTHO05D009714 8.6e-07 56.6 61 47.5
AT1G63570 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 1.1e-06 56.2 61 52.5
BcaB07g31566 Brassica carinata HOM05D000022 ORTHO05D009714 1.1e-06 56.2 59 50.8
BcaB07g31571 Brassica carinata HOM05D000022 ORTHO05D009714 1.1e-06 56.2 59 50.8
AL2G11650 Arabidopsis lyrata HOM05D000022 ORTHO05D009714 1.5e-06 55.8 62 50.0
CARHR213050 Cardamine hirsuta HOM05D000022 ORTHO05D009714 1.5e-06 55.8 59 55.9
Thecc.06G210500 Theobroma cacao HOM05D000022 ORTHO05D000071 3.3e-06 54.7 62 45.2
CARHR047750 Cardamine hirsuta HOM05D000022 ORTHO05D009714 4.2e-06 54.3 55 49.1
AL2G11640 Arabidopsis lyrata HOM05D000022 ORTHO05D009714 9.5e-06 53.1 55 54.5
C09p16400 Brassica napus HOM05D000022 ORTHO05D009714 9.5e-06 53.1 61 49.2
BolC9t54550H Brassica oleracea HOM05D000022 ORTHO05D009714 9.5e-06 53.1 61 49.2
Thhalv10027911m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 9.5e-06 53.1 61 49.2


User provided reference genes

Program Settings