Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08917 Brassica carinata HOM05D002129 ORTHO05D002188 1.9e-199 701.0 1488 100.0
C04p49150 Brassica napus HOM05D002129 ORTHO05D002188 2.1e-174 617.8 1488 96.9
A04p14960 Brassica napus HOM05D002129 ORTHO05D002188 1.3e-139 502.3 1490 88.5
BraA04t17139Z Brassica rapa HOM05D002129 ORTHO05D002188 7.4e-119 433.3 1492 73.9
BolC4t26499H Brassica oleracea HOM05D002129 ORTHO05D002188 2.1e-113 415.2 239 100.0
BcaB06g27672 Brassica carinata HOM05D002129 ORTHO05D002188 6.2e-110 403.7 306 90.2
Sp7g00300 Schrenkiella parvula HOM05D002129 ORTHO05D002188 5.5e-106 390.6 326 83.1
AT5G41790 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 6.9e-93 347.1 328 67.1
Carub.0007s3359 Capsella rubella HOM05D002129 ORTHO05D002188 1.9e-90 339.0 307 69.1
Thhalv10027620m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 7.9e-89 333.6 537 61.8
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 2.0e-87 328.9 466 71.2
BcaC08g44556 Brassica carinata HOM05D002129 ORTHO05D002188 9.7e-87 326.6 466 71.0
A07p20930 Brassica napus HOM05D002129 ORTHO05D002188 2.9e-83 315.1 466 70.4
AL7G47470 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 7.2e-82 310.5 311 66.2
BolC6t37203H Brassica oleracea HOM05D002129 ORTHO05D002188 3.0e-80 305.1 1488 78.3
Carub.0007s3367 Capsella rubella HOM05D002129 ORTHO05D021914 2.5e-74 285.4 338 58.0
BcaC07g39281 Brassica carinata HOM05D002129 ORTHO05D016708 1.9e-66 259.2 234 71.4
C08p22900 Brassica napus HOM05D002129 ORTHO05D016708 2.6e-63 248.8 234 79.9
BolC8t49926H Brassica oleracea HOM05D002129 ORTHO05D016708 2.6e-63 248.8 234 79.9
Aa31LG9G340 Aethionema arabicum HOM05D002129 ORTHO05D002188 1.5e-58 233.0 254 59.4
CARHR212780 Cardamine hirsuta HOM05D002129 ORTHO05D002188 6.1e-57 227.6 188 77.1
AL2G10610 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 8.9e-56 223.8 232 63.4
THA.LOC104809341 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 4.4e-55 221.5 445 40.7
BcaB07g31455 Brassica carinata HOM05D002129 ORTHO05D002188 2.8e-54 218.8 229 61.1
C07p01920 Brassica napus HOM05D002129 ORTHO05D002188 3.5e-52 211.8 278 61.2
Thhalv10023387m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.0e-51 210.3 223 61.4
Sp2g00430 Schrenkiella parvula HOM05D002129 ORTHO05D002188 8.6e-51 207.2 207 62.3
C09p17910 Brassica napus HOM05D002129 ORTHO05D002188 1.2e-49 203.4 229 57.2
BolC9t54688H Brassica oleracea HOM05D002129 ORTHO05D002188 1.2e-49 203.4 229 57.2
BcaC04g22559 Brassica carinata HOM05D002129 ORTHO05D002188 1.0e-48 200.3 229 56.8
A09p14790 Brassica napus HOM05D002129 ORTHO05D002188 8.9e-48 197.2 229 55.9
Carub.0002s0048 Capsella rubella HOM05D002129 ORTHO05D002188 3.7e-46 191.8 184 66.8
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 6.6e-43 181.0 345 37.4
BcaC06g36642 Brassica carinata HOM05D002129 ORTHO05D002188 5.6e-42 177.9 137 76.6
BolC7t40600H Brassica oleracea HOM05D002129 ORTHO05D002188 5.6e-42 177.9 137 76.6
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 9.5e-42 177.2 251 46.6
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 6.8e-40 171.0 232 48.7
Gohir.A02G102200 Gossypium hirsutum HOM05D002129 ORTHO05D002188 8.9e-40 170.6 306 39.2
Gohir.D03G081900 Gossypium hirsutum HOM05D002129 ORTHO05D002188 9.8e-39 167.2 217 47.9
AT1G64330 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 1.3e-38 166.8 181 60.8
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.3e-38 166.8 225 46.7
CARHR046630 Cardamine hirsuta HOM05D002129 ORTHO05D002188 2.2e-38 166.0 222 52.3
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 2.9e-38 165.6 251 43.0
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 6.4e-38 164.5 253 43.5
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 8.3e-38 164.1 247 44.5
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 5.4e-37 161.4 228 47.4
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 7.1e-37 161.0 255 43.5
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.2e-36 160.2 237 46.4
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 2.7e-36 159.1 251 43.4
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.7e-35 156.4 222 46.8
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 3.0e-35 155.6 217 47.5
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 8.6e-35 154.1 219 47.5
Actinidia27335 Actinidia chinensis HOM05D002129 ORTHO05D002188 3.3e-34 152.1 252 43.7
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 2.8e-33 149.1 341 37.5
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 8.1e-33 147.5 238 44.1
Ca_17495_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 3.1e-32 145.6 250 40.4
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.2e-31 143.7 225 44.9
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 1.2e-31 143.7 243 38.3
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 3.4e-31 142.1 213 44.6
A07p20920 Brassica napus HOM05D002129 ORTHO05D002188 4.4e-31 141.7 165 64.2
Solyc08g082010.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 7.6e-31 141.0 233 45.5
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.4e-29 136.0 207 44.0
RcHm_v2.0_Chr7g0195431 Rosa chinensis HOM05D002129 ORTHO05D002188 3.2e-29 135.6 203 44.3
TAR374G0929 Trochodendron aralioides HOM05D002129 ORTHO05D002188 3.2e-29 135.6 253 37.9
Nitab4.5_0000223g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 5.4e-29 134.8 331 42.3
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 1.6e-28 133.3 223 42.2
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 1.6e-28 133.3 224 45.1
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 3.5e-28 132.1 203 45.8
vmacro13912 Vaccinium macrocarpon HOM05D002129 ORTHO05D002188 1.3e-27 130.2 184 42.9
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.7e-27 129.8 338 37.0
Nitab4.5_0004161g0030 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.7e-27 129.8 209 45.5
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 1.7e-27 129.8 227 41.4
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.9e-27 128.6 340 36.8
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 8.6e-27 127.5 338 36.7
Medtr8g099275 Medicago truncatula HOM05D002129 ORTHO05D002188 1.1e-26 127.1 251 37.8
BcaC02g11041 Brassica carinata HOM05D002129 ORTHO05D016708 1.5e-26 126.7 338 34.9
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 1.9e-26 126.3 194 46.9
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 5.6e-26 124.8 188 41.0
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 7.3e-26 124.4 175 42.9
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 1.2e-25 123.6 183 41.0
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 1.2e-25 123.6 200 42.5
Oeu009945.1 Olea europaea HOM05D002129 ORTHO05D002188 1.6e-25 123.2 335 34.9
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 8.1e-25 120.9 335 31.3
Oeu042387.1 Olea europaea HOM05D002129 ORTHO05D002188 8.1e-25 120.9 197 45.2
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 1.4e-24 120.2 185 43.8
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 3.1e-24 119.0 351 33.9
CAN.G532.94 Capsicum annuum HOM05D002129 ORTHO05D002188 4.0e-24 118.6 184 46.7
SGA_v2.0_scaffold111G31429 Striga asiatica HOM05D002129 ORTHO05D002188 4.0e-24 118.6 227 41.4
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 5.2e-24 118.2 221 43.4
Cpa.g.sc79.65 Carica papaya HOM05D002129 ORTHO05D002188 6.8e-24 117.9 216 41.2
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 8.9e-24 117.5 183 39.3
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 1.5e-23 116.7 207 41.5
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 2.0e-23 116.3 214 40.2
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 2.0e-23 116.3 178 48.9
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 2.0e-23 116.3 215 40.0
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 4.4e-23 115.2 221 41.6
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 9.9e-23 114.0 236 33.9
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 2.2e-22 112.8 179 43.6
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 2.2e-22 112.8 252 34.9
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 3.8e-22 112.1 246 33.7
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 4.9e-22 111.7 206 41.7
ECA233G6022 Erigeron canadensis HOM05D002129 ORTHO05D002188 6.4e-22 111.3 228 39.0
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 6.4e-22 111.3 228 39.0
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 8.4e-22 110.9 185 42.2
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 3.2e-21 109.0 183 37.2
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 4.2e-21 108.6 234 39.3
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.2e-21 108.6 359 29.5
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.2e-21 108.6 359 29.5
Atru.chr9.2042 Acer truncatum HOM05D002129 ORTHO05D002188 7.1e-21 107.8 188 42.6
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 2.1e-20 106.3 182 35.7
SGA_v2.0_scaffold144G35850 Striga asiatica HOM05D002129 ORTHO05D002188 2.1e-20 106.3 227 39.6
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 3.5e-20 105.5 180 37.8
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 4.6e-20 105.1 228 39.0
MSTRG.25657 Avicennia marina HOM05D002129 ORTHO05D002188 1.0e-19 104.0 266 36.8
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 1.3e-19 103.6 228 38.6
SalBow8G2059 Salvia bowleyana HOM05D002129 ORTHO05D002188 2.3e-19 102.8 210 40.5
Lalb_Chr05g0224241 Lupinus albus HOM05D002129 ORTHO05D002188 3.0e-19 102.4 202 33.2
Sc07g0009960 Simmondsia chinensis HOM05D002129 ORTHO05D002188 3.0e-19 102.4 320 36.6
HanXRQChr03g0085141 Helianthus annuus HOM05D002129 ORTHO05D002188 8.7e-19 100.9 209 40.7
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 2.5e-18 99.4 252 34.5
Aqoxy5G04152 Aquilegia oxysepala HOM05D002129 ORTHO05D002188 3.3e-18 99.0 340 32.4
HanXRQChr02g0048241 Helianthus annuus HOM05D002129 ORTHO05D002188 4.3e-18 98.6 181 44.2
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 5.6e-18 98.2 243 33.7
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 7.3e-18 97.8 259 35.1
ECA240G2507 Erigeron canadensis HOM05D002129 ORTHO05D002188 1.6e-17 96.7 221 38.5
Migut.E01236 Erythranthe guttata HOM05D002129 ORTHO05D002188 1.6e-17 96.7 184 39.7
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 6.2e-17 94.7 216 36.6
Psat7g027680 Pisum sativum HOM05D002129 ORTHO05D002188 1.8e-16 93.2 214 36.9
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.4e-16 92.8 306 34.6
BcaB02g10228 Brassica carinata HOM05D002129 ORTHO05D016708 3.1e-16 92.4 271 36.5
arahy.Tifrunner.gnm1.ann1.F3VNHJ Arachis hypogaea HOM05D002129 ORTHO05D002188 7.6e-15 87.8 149 35.6
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 7.6e-15 87.8 242 30.6
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 4.9e-14 85.1 359 30.1
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 6.4e-14 84.7 224 31.2
arahy.Tifrunner.gnm1.ann1.P7UIV5 Arachis hypogaea HOM05D002129 ORTHO05D002188 8.4e-14 84.3 149 34.9
Lsat_1_v5_gn_6_85821 Lactuca sativa HOM05D002129 ORTHO05D002188 2.4e-13 82.8 217 35.0
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 5.4e-13 81.6 224 29.5
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 2.7e-12 79.3 232 32.8
Migut.N02095 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.6e-12 78.6 241 31.1
SalBow1G3214 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.0e-11 77.4 234 34.2
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.3e-11 77.0 223 29.6
CSS0015477 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.7e-11 76.6 223 29.6
EL10Ac5g12884 Beta vulgaris HOM05D002129 ORTHO05D002188 3.0e-11 75.9 187 37.4
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 9.6e-10 70.9 331 29.3
PSO135G0315 Papaver somniferum HOM05D031015 ORTHO05D002188 2.8e-09 69.3 228 33.3
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 2.8e-09 69.3 180 31.7
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 3.6e-09 68.9 159 39.0
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 8.1e-09 67.8 192 37.0
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 8.1e-09 67.8 178 29.8
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 8.1e-09 67.8 228 28.5
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 1.1e-08 67.4 232 32.3
PSO170G1432 Papaver somniferum HOM05D031015 ORTHO05D002188 2.4e-08 66.2 185 35.1
MSTRG.1816 Avicennia marina HOM05D002129 ORTHO05D002188 5.3e-08 65.1 290 34.5
A07p07550 Brassica napus HOM05D002129 ORTHO05D002188 6.9e-08 64.7 46 76.1
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 9.0e-08 64.3 232 31.0
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 9.0e-08 64.3 245 29.8
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 9.0e-08 64.3 228 26.3
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.0e-07 63.2 232 33.6
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 4.5e-07 62.0 220 25.9
Hund11405 Selenicereus undatus HOM05D002129 ORTHO05D002188 4.5e-07 62.0 137 42.3
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 5.8e-07 61.6 258 29.5
PSO384G3006 Papaver somniferum HOM05D031015 ORTHO05D002188 7.6e-07 61.2 176 34.1
Migut.A00678 Erythranthe guttata HOM05D002129 ORTHO05D002188 1.3e-06 60.5 264 30.7
Ca_17494_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 2.2e-06 59.7 39 69.2
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 8.4e-06 57.8 89 41.6


User provided reference genes

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