Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.2e-244 849.7 548 100.0
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.2e-244 849.7 548 100.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.1e-242 843.2 543 100.0
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 3.5e-236 821.6 551 94.0
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 6.5e-230 800.8 558 89.4
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.8e-224 782.7 548 94.9
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 3.7e-209 731.9 557 84.9
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.8e-208 729.6 566 86.7
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 4.1e-208 728.4 560 88.2
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 3.5e-207 725.3 554 87.5
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 5.2e-203 711.4 557 84.0
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.0e-202 709.5 557 84.7
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 3.0e-195 685.6 565 80.0
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 2.8e-177 625.9 563 72.6
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.0e-150 537.7 439 77.7
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.7e-150 537.0 466 74.5
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 9.6e-149 531.2 448 75.7
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 8.1e-148 528.1 451 75.8
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 8.9e-147 524.6 431 76.6
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.2e-146 524.2 458 73.1
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 2.6e-146 523.1 463 72.1
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 4.4e-146 522.3 480 66.5
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.2e-145 520.0 453 68.9
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 8.4e-145 518.1 445 68.3
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 8.4e-145 518.1 447 68.5
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-144 516.5 454 74.4
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 9.3e-144 514.6 432 70.4
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.2e-143 514.2 461 69.4
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.6e-143 513.8 455 68.4
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.6e-143 513.8 455 72.3
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.7e-143 513.1 454 74.0
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.0e-142 511.1 453 67.5
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.3e-142 510.8 452 67.5
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.7e-142 510.4 445 74.2
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.0e-142 509.6 440 74.5
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 3.9e-142 509.2 457 72.4
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 5.1e-142 508.8 443 68.4
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 6.6e-142 508.4 450 71.3
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 8.7e-142 508.1 550 62.5
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 1.1e-141 507.7 454 67.8
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.5e-141 506.5 451 68.1
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 2.8e-140 503.1 466 66.1
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 4.8e-140 502.3 475 68.6
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.2e-140 501.9 468 60.0
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.2e-140 501.9 437 75.3
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 8.1e-140 501.5 464 70.7
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.1e-139 501.1 447 71.6
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.8e-139 500.4 464 65.3
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.3e-139 498.8 462 69.9
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.9e-139 498.4 486 63.8
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 6.9e-139 498.4 446 67.0
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 9.0e-139 498.0 462 70.1
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.0e-139 498.0 462 69.7
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-138 497.7 434 75.1
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 5.8e-138 495.4 426 69.0
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 7.6e-138 495.0 434 73.3
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 7.6e-138 495.0 443 67.3
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 9.9e-138 494.6 551 61.2
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.2e-137 493.4 457 70.5
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 3.8e-137 492.7 450 70.2
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 3.8e-137 492.7 465 71.4
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 3.8e-137 492.7 464 64.9
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 3.8e-137 492.7 455 66.2
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.1e-136 491.1 434 72.6
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 3.2e-136 489.6 457 69.6
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 5.4e-136 488.8 443 71.3
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 7.1e-136 488.4 471 68.4
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 1.6e-135 487.3 454 66.1
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 2.1e-135 486.9 463 65.2
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.1e-135 486.9 462 64.9
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 2.7e-135 486.5 491 59.1
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 2.7e-135 486.5 455 69.9
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 6.0e-135 485.3 455 69.7
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 1.7e-134 483.8 429 73.4
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.3e-134 483.4 429 73.0
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.0e-134 483.0 435 73.3
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 3.0e-134 483.0 401 71.6
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 3.0e-134 483.0 492 66.7
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 6.6e-134 481.9 464 68.3
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.9e-133 480.3 462 64.7
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 2.1e-132 476.9 395 78.2
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 2.8e-132 476.5 429 73.0
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.1e-132 474.9 453 70.2
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.1e-132 474.9 453 70.0
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 9.0e-131 471.5 464 69.0
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.5e-130 470.7 437 70.0
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 2.9e-129 466.5 467 62.1
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.9e-129 466.5 428 66.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.8e-129 466.1 470 67.4
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.9e-128 463.8 522 54.2
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 3.2e-128 463.0 461 61.2
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.0e-126 458.0 452 69.7
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.3e-126 456.8 441 64.6
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 8.7e-126 454.9 454 59.3
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.5e-125 453.4 408 73.3
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 5.6e-125 452.2 451 62.7
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 9.6e-125 451.4 456 69.1
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.4e-123 447.6 382 68.1
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 4.5e-122 442.6 467 66.8
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.0e-121 441.4 443 61.9
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 2.9e-121 439.9 403 65.0
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 2.5e-120 436.8 433 62.1
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 5.5e-120 435.6 357 67.5
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 2.7e-119 433.3 431 67.7
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 6.0e-119 432.2 471 59.0
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 2.3e-118 430.3 458 67.2
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 5.1e-118 429.1 423 69.0
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.4e-115 420.2 467 62.7
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 3.0e-110 403.3 457 56.9
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 4.3e-109 399.4 419 66.6
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 3.4e-106 389.8 466 60.3
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.9e-105 386.7 471 55.4
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 8.5e-105 385.2 444 62.8
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.9e-104 384.0 389 65.0
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 4.6e-103 379.4 477 49.7
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 5.1e-102 375.9 358 74.0
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 3.7e-100 369.8 419 58.7
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 3.1e-99 366.7 424 62.5
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 9.1e-99 365.2 241 81.7
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 4.7e-95 352.8 420 60.5
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 2.0e-93 347.4 330 65.5
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.8e-89 333.2 332 58.7
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 8.5e-89 332.0 343 63.0
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.8e-83 314.3 345 67.2
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 7.0e-83 312.4 323 71.2
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 5.0e-81 306.2 401 55.6
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 4.1e-75 286.6 600 42.2
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 3.5e-74 283.5 280 54.6
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 2.2e-68 264.2 280 72.9
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 5.2e-62 243.0 182 74.7
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 9.8e-61 238.8 380 39.7
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 2.3e-54 217.6 322 56.8
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.3e-52 211.8 153 68.6
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.6e-48 196.4 142 67.6
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.5e-48 195.7 142 67.6
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.8e-47 194.1 142 66.9
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 1.8e-46 191.4 135 72.6
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-43 181.0 169 56.8
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.9e-41 173.7 135 63.7
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-40 172.2 135 62.2
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 4.9e-36 156.8 93 87.1
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.1e-35 153.7 172 51.2
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-33 148.7 129 59.7
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.2e-31 142.1 95 75.8
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.4e-28 129.8 114 58.8
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-24 119.0 73 75.3
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 4.9e-20 103.6 459 23.5
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.6e-15 88.6 214 30.8
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 1.6e-15 88.6 53 77.4
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 4.0e-14 84.0 55 69.1
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 6.4e-12 76.6 71 62.0
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.2e-11 74.3 52 75.0
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 3.5e-10 70.9 82 51.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.1e-06 57.8 123 35.8


User provided reference genes

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