Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08834 Brassica carinata HOM05D003497 ORTHO05D003964 2.3e-99 365.5 184 100.0
BcaC02g08838 Brassica carinata HOM05D003497 ORTHO05D003964 2.3e-99 365.5 184 100.0
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 2.1e-60 236.1 129 95.3
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 3.8e-57 225.3 162 77.2
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 1.9e-56 223.0 173 72.3
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 7.9e-55 217.6 162 75.3
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 3.9e-54 215.3 155 76.8
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 1.6e-47 193.4 162 70.4
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 6.0e-47 191.4 162 65.4
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.1e-32 144.1 161 56.5
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 2.5e-32 142.9 152 58.6
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.0e-30 137.5 149 52.3
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 5.1e-30 135.2 152 54.6
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 8.7e-30 134.4 151 54.3
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 8.7e-30 134.4 151 54.3
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 8.7e-30 134.4 151 54.3
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 1.5e-29 133.7 151 53.6
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 1.5e-29 133.7 151 53.6
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 2.5e-29 132.9 156 51.3
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 7.4e-29 131.3 151 53.6
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 1.3e-28 130.6 152 53.3
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 4.1e-27 125.6 181 42.5
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 6.9e-27 124.8 162 50.0
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 6.9e-27 124.8 150 51.3
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 4.5e-26 122.1 180 42.2
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 5.9e-26 121.7 155 48.4
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.9e-24 116.7 151 49.0
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 7.2e-24 114.8 151 47.7
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 2.5e-21 106.3 153 43.8
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 4.5e-18 95.5 155 40.0
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-16 90.5 165 43.0
C03p57300 Brassica napus HOM05D003497 ORTHO05D003964 3.2e-16 89.4 82 63.4
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.0e-14 84.3 139 38.8
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 5.1e-14 82.0 121 42.1
C08p22090 Brassica napus HOM05D003497 ORTHO05D024176 1.5e-13 80.5 124 48.4
BolC8t49854H Brassica oleracea HOM05D003497 ORTHO05D024176 1.5e-13 80.5 124 48.4
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 3.3e-13 79.3 179 36.3
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 1.7e-12 77.0 175 35.4
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 2.2e-12 76.6 178 35.4
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 4.8e-12 75.5 179 35.2
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 6.3e-12 75.1 166 36.1
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 1.1e-11 74.3 176 33.5
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.1e-11 74.3 180 33.3
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.4e-11 73.9 175 33.7
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.4e-11 73.9 175 33.7
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.8e-11 73.6 167 36.5
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 2.0e-10 70.1 165 35.8
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.6e-10 69.7 166 31.9
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.5e-10 69.3 175 32.6
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 3.5e-10 69.3 165 35.2
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 5.9e-10 68.6 109 37.6
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 7.7e-10 68.2 101 38.6
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.0e-09 67.8 131 36.6
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.0e-09 67.8 104 43.3
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.0e-09 67.8 172 32.6
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 1.0e-09 67.8 163 33.7
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 2.2e-09 66.6 160 30.0
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 2.2e-09 66.6 106 39.6
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.2e-09 66.6 108 39.8
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.2e-09 66.6 108 39.8
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 2.2e-09 66.6 95 41.1
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.2e-09 66.6 100 45.0
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.2e-09 66.6 107 41.1
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 2.9e-09 66.2 165 35.2
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 2.9e-09 66.2 109 39.4
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 2.9e-09 66.2 114 38.6
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 2.9e-09 66.2 169 30.8
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 3.8e-09 65.9 110 39.1
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 3.8e-09 65.9 106 35.8
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 5.0e-09 65.5 105 38.1
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 6.5e-09 65.1 169 34.3
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 6.5e-09 65.1 110 40.0
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 8.5e-09 64.7 102 41.2
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 8.5e-09 64.7 92 43.5
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 1.1e-08 64.3 163 30.1
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 1.1e-08 64.3 168 33.9
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 1.5e-08 63.9 163 34.4
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 1.9e-08 63.5 165 32.1
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.9e-08 63.5 109 38.5
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 1.9e-08 63.5 147 30.6
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 2.5e-08 63.2 96 40.6
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 4.2e-08 62.4 92 43.5
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 7.2e-08 61.6 175 34.3
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 7.2e-08 61.6 150 32.7
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 7.2e-08 61.6 91 40.7
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 7.2e-08 61.6 161 34.8
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 9.4e-08 61.2 116 36.2
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 1.2e-07 60.8 101 35.6
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.1e-07 60.1 106 38.7
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 2.7e-07 59.7 164 32.3
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 2.7e-07 59.7 174 31.0
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 3.6e-07 59.3 106 37.7
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 3.6e-07 59.3 160 33.1
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 4.7e-07 58.9 101 40.6
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 6.1e-07 58.5 100 35.0
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 6.1e-07 58.5 117 44.4
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 6.1e-07 58.5 158 32.3
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 6.1e-07 58.5 130 34.6
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 8.0e-07 58.2 165 29.7
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 8.0e-07 58.2 164 30.5
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 8.0e-07 58.2 71 49.3
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 8.0e-07 58.2 90 34.4
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.0e-06 57.8 99 35.4
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 2.3e-06 56.6 113 35.4
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 2.3e-06 56.6 109 35.8
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 3.0e-06 56.2 106 36.8
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 3.0e-06 56.2 167 31.1
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 4.0e-06 55.8 171 29.8
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 4.0e-06 55.8 172 29.7
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 4.0e-06 55.8 159 28.3
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 5.2e-06 55.5 162 30.2
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 5.2e-06 55.5 170 28.8
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 5.2e-06 55.5 92 37.0
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 5.2e-06 55.5 184 31.0
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 6.7e-06 55.1 168 30.4
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 6.7e-06 55.1 109 35.8
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 8.8e-06 54.7 104 36.5
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 8.8e-06 54.7 171 28.7


User provided reference genes

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