Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 4.2e-198 694.5 353 100.0
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 4.2e-198 694.5 353 100.0
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 3.3e-195 684.9 353 98.6
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 2.6e-192 675.2 353 97.2
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 4.1e-177 624.8 353 90.4
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 1.0e-175 620.2 353 90.4
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 1.3e-175 619.8 353 89.8
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 4.2e-174 614.8 353 90.1
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 5.5e-174 614.4 354 89.3
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 3.6e-173 611.7 353 89.5
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 4.5e-168 594.7 353 85.3
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 4.9e-154 548.1 353 78.8
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 4.6e-152 541.6 351 75.8
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.6e-149 533.1 342 77.2
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 2.8e-149 532.3 354 74.6
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 5.2e-148 528.1 353 74.8
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 8.9e-148 527.3 340 77.1
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 8.9e-148 527.3 349 74.5
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 8.9e-148 527.3 351 74.6
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.5e-147 526.6 342 76.3
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.9e-146 522.3 301 83.4
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 2.9e-146 522.3 358 72.3
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 4.9e-146 521.5 343 74.1
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.4e-145 520.0 301 83.1
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.9e-145 519.6 323 78.3
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 1.9e-145 519.6 393 68.2
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 3.2e-145 518.8 343 75.2
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 3.2e-145 518.8 351 73.2
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 5.4e-145 518.1 342 76.0
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 9.2e-145 517.3 351 72.6
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 1.2e-144 516.9 358 72.9
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 2.7e-144 515.8 343 75.2
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 2.7e-144 515.8 340 74.4
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 2.7e-144 515.8 351 74.4
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 4.6e-144 515.0 351 74.1
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 4.6e-144 515.0 345 73.9
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 7.8e-144 514.2 352 74.7
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 7.8e-144 514.2 340 74.7
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 1.7e-143 513.1 312 78.8
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 3.0e-143 512.3 340 75.0
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 3.9e-143 511.9 340 74.7
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 3.9e-143 511.9 309 80.6
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 5.0e-143 511.5 330 76.4
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 5.0e-143 511.5 361 70.9
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 6.6e-143 511.1 345 73.3
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 6.6e-143 511.1 345 73.0
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 1.9e-142 509.6 301 82.4
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 1.9e-142 509.6 303 81.8
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 1.9e-142 509.6 349 71.9
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 5.6e-142 508.1 356 72.2
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 7.3e-142 507.7 347 72.6
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 2.1e-141 506.1 341 74.2
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 2.1e-141 506.1 303 80.5
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 6.2e-141 504.6 305 80.0
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 1.1e-140 503.8 346 72.5
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 1.1e-140 503.8 347 72.6
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 1.8e-140 503.1 357 70.3
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 2.3e-140 502.7 345 71.9
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 1.2e-139 500.4 348 71.3
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.2e-139 500.4 354 70.3
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 1.5e-139 500.0 356 70.8
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 2.0e-139 499.6 320 76.2
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 4.4e-139 498.4 360 70.0
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 5.8e-139 498.0 361 69.0
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 7.5e-139 497.7 360 70.0
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 1.3e-138 496.9 361 68.1
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 2.2e-138 496.1 342 72.5
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 2.9e-138 495.7 301 80.1
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.1e-137 493.8 303 79.5
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.9e-137 493.0 324 74.4
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 4.1e-137 491.9 310 75.8
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 1.5e-134 483.4 309 77.0
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 4.3e-134 481.9 395 63.8
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 3.6e-133 478.8 399 64.4
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 5.2e-132 474.9 307 76.9
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 1.7e-130 469.9 320 71.6
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 1.1e-129 467.2 319 70.5
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.6e-128 463.4 304 72.0
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.1e-126 457.2 306 72.5
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 4.0e-124 448.7 281 76.9
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 8.9e-124 447.6 317 70.3
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 3.9e-119 432.2 347 63.1
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 5.1e-119 431.8 362 64.6
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 5.1e-119 431.8 311 65.3
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 5.1e-119 431.8 311 65.3
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 8.7e-119 431.0 323 66.3
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.9e-118 429.9 305 67.2
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 6.2e-117 424.9 318 67.9
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.1e-116 424.1 297 71.0
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 3.1e-116 422.5 300 66.0
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 8.4e-114 414.5 311 65.9
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 1.3e-109 400.6 357 60.8
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 9.6e-102 374.4 264 73.1
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 4.0e-100 369.0 280 67.1
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 1.4e-92 344.0 351 51.3
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 1.1e-89 334.3 255 69.4
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 1.6e-88 330.5 308 51.9
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 7.7e-83 311.6 184 81.5
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 1.7e-82 310.5 258 60.9
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 1.8e-79 300.4 309 50.5
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.5e-78 297.4 380 48.7
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 2.0e-78 297.0 233 67.0
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.8e-76 290.4 226 65.5
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 2.0e-75 287.0 240 59.2
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 2.2e-66 256.9 204 64.2
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.8e-63 247.3 248 56.9
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 5.7e-62 242.3 124 90.3
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.7e-61 240.7 124 89.5
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.4e-55 221.1 123 80.5
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.4e-55 221.1 123 80.5
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 3.2e-49 199.9 181 60.8
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 6.1e-48 195.7 149 69.1
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 2.0e-43 180.6 144 69.4
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.4e-39 167.9 120 75.8
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.2e-38 164.9 122 63.9
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.3e-37 161.4 102 81.4
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.6e-35 154.5 297 35.4
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 1.3e-34 151.4 117 70.9
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 2.5e-33 147.1 78 88.5
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.1e-32 144.1 307 30.6
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 6.8e-31 139.0 102 73.5
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 2.7e-27 127.1 114 63.2
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 3.5e-27 126.7 66 89.4
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 1.2e-24 118.2 180 38.9
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 2.2e-21 107.5 114 52.6
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.9e-17 94.4 180 35.6
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 2.4e-15 87.4 133 43.6
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 1.1e-12 78.6 45 82.2
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.1e-12 78.6 64 64.1
CSS0045021 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D008114 2.8e-08 63.9 295 25.4
VMungo1309G1770 Vigna mungo HOM05D001625 ORTHO05D008114 6.2e-08 62.8 243 27.2
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 1.1e-07 62.0 239 28.5
QL02p005347 Quercus lobata HOM05D001625 ORTHO05D008114 1.1e-07 62.0 232 27.2
Rhsim06G0048400 Rhododendron simsii HOM05D001625 ORTHO05D008114 3.1e-07 60.5 248 26.2
Phvul.009G064000 Phaseolus vulgaris HOM05D001625 ORTHO05D008114 6.9e-07 59.3 234 27.8
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 9.0e-07 58.9 59 52.5
CiPaw.15G061300 Carya illinoinensis HOM05D001625 ORTHO05D008114 1.5e-06 58.2 234 26.1
Cfa018529 Carpinus fangiana HOM05D001625 ORTHO05D008114 2.6e-06 57.4 245 28.2
Cpa.g.sc49.3 Carica papaya HOM05D001625 ORTHO05D008114 5.8e-06 56.2 256 24.2
AL7G18200 Arabidopsis lyrata HOM05D001625 ORTHO05D008114 7.6e-06 55.8 231 23.8
Carub.0007s0712 Capsella rubella HOM05D001625 ORTHO05D008114 7.6e-06 55.8 235 25.1


User provided reference genes

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