Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.1e-125 453.4 241 100.0
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.1e-125 453.4 241 100.0
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 2.7e-124 448.7 241 98.8
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.8e-123 446.0 241 98.3
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 4.0e-123 444.9 241 97.9
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 1.2e-122 443.4 241 97.9
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 3.4e-122 441.8 241 96.7
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 4.4e-122 441.4 242 97.9
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 2.2e-121 439.1 241 97.5
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.2e-121 439.1 246 96.3
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 2.0e-119 432.6 244 96.7
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 3.5e-119 431.8 242 96.7
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 3.5e-119 431.8 242 96.7
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.0e-118 430.3 244 96.3
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 1.9e-117 426.0 241 93.4
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 2.7e-116 422.2 241 93.4
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.4e-115 419.9 241 92.1
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 2.7e-111 405.6 241 87.6
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 8.3e-105 384.0 241 83.4
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.0e-102 377.1 241 82.6
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 6.6e-102 374.4 243 82.3
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 2.3e-94 349.4 241 74.7
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 1.5e-93 346.7 240 73.8
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 3.3e-93 345.5 241 75.5
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 5.6e-93 344.7 243 74.1
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 6.2e-92 341.3 196 91.8
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.8e-91 339.7 241 74.3
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 3.1e-91 339.0 241 73.4
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 4.0e-91 338.6 241 73.0
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 5.2e-91 338.2 241 73.9
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 8.9e-91 337.4 241 73.4
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 1.2e-90 337.0 242 71.9
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.2e-90 337.0 241 72.6
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 1.2e-90 337.0 241 73.9
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.5e-90 336.7 242 71.1
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 4.4e-90 335.1 241 72.6
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 7.5e-90 334.3 241 71.8
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 7.5e-90 334.3 241 71.8
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.7e-89 333.2 242 72.7
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 1.7e-89 333.2 241 71.8
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.7e-89 333.2 241 71.8
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.9e-89 332.4 241 72.2
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.7e-89 332.0 242 73.1
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 3.7e-89 332.0 241 72.2
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 4.9e-89 331.6 241 71.4
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 4.9e-89 331.6 241 72.2
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 6.4e-89 331.3 241 70.5
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 1.1e-88 330.5 241 71.4
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.1e-88 330.5 241 73.0
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 1.1e-88 330.5 241 70.1
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.9e-88 329.7 241 71.4
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 3.2e-88 328.9 242 71.5
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 4.1e-88 328.6 241 72.6
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 4.1e-88 328.6 235 71.5
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 9.2e-88 327.4 241 71.0
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.2e-87 327.0 242 70.7
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 4.6e-87 325.1 242 69.8
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 4.6e-87 325.1 242 70.7
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 7.8e-87 324.3 242 70.2
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.3e-86 323.6 241 69.3
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 1.7e-86 323.2 241 69.3
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 1.7e-86 323.2 242 69.0
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.3e-86 322.8 241 70.5
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 3.0e-86 322.4 242 69.0
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.0e-86 322.4 242 71.5
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 8.6e-86 320.9 241 70.1
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.5e-85 320.1 238 71.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.5e-85 320.1 244 70.5
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.9e-85 319.7 242 69.8
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 3.3e-85 318.9 244 68.4
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 5.6e-85 318.2 239 71.5
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 5.6e-85 318.2 245 69.8
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 7.3e-85 317.8 241 68.5
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.6e-84 316.6 244 68.4
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 2.1e-84 316.2 244 68.4
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.1e-84 316.2 282 62.4
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 4.7e-84 315.1 242 68.6
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.4e-83 313.5 239 70.7
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 2.3e-83 312.8 237 70.0
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 5.2e-83 311.6 242 69.0
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 5.2e-83 311.6 242 65.7
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 6.8e-83 311.2 244 68.4
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 1.2e-82 310.5 241 66.4
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.2e-82 310.5 245 67.8
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 2.0e-82 309.7 241 67.2
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.6e-82 309.3 241 67.2
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 2.6e-82 309.3 243 67.9
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 2.6e-82 309.3 242 65.7
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 3.4e-82 308.9 242 67.4
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.4e-82 308.5 241 69.3
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 5.8e-82 308.1 242 68.2
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 5.8e-82 308.1 243 68.7
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 9.9e-82 307.4 270 62.2
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 2.9e-81 305.8 243 67.1
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 3.7e-81 305.4 243 66.7
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 6.4e-81 304.7 220 71.4
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 8.4e-81 304.3 243 67.1
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.2e-80 302.4 243 66.3
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 5.4e-80 301.6 258 65.1
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 7.1e-80 301.2 243 66.3
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 3.5e-79 298.9 226 68.6
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 6.0e-79 298.1 231 68.4
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 2.3e-78 296.2 281 60.5
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 3.0e-78 295.8 258 64.3
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 7.3e-77 291.2 222 69.8
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 1.2e-76 290.4 246 65.0
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.6e-76 290.0 223 68.2
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.8e-76 289.3 221 68.8
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 3.6e-76 288.9 290 56.2
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.1e-75 287.3 197 75.6
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 2.4e-75 286.2 202 70.8
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 5.2e-75 285.0 246 62.2
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 2.0e-74 283.1 196 75.0
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 2.0e-74 283.1 244 62.3
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 2.6e-74 282.7 196 74.0
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 5.8e-74 281.6 196 73.5
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 5.8e-74 281.6 244 61.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 9.9e-74 280.8 231 64.1
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.4e-72 276.2 196 71.4
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.4e-72 276.2 199 71.9
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 3.2e-72 275.8 196 70.4
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.2e-72 275.4 199 72.4
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.4e-72 275.0 204 70.6
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.4e-72 275.0 199 71.9
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 1.6e-71 273.5 196 72.4
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 4.6e-71 271.9 197 71.6
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.3e-70 270.4 277 56.0
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.2e-64 249.2 220 60.9
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 1.6e-63 246.9 175 72.6
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.6e-63 246.9 242 57.4
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.7e-63 246.1 179 69.3
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 2.8e-60 236.1 188 64.4
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.1e-54 215.3 196 61.7
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 6.7e-54 214.9 155 72.9
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 4.0e-51 205.7 210 54.8
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.0e-46 191.0 135 70.4
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.1e-45 187.6 155 63.9
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 3.6e-39 166.0 112 77.7
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 7.4e-37 158.3 130 60.0
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.2e-34 151.0 149 56.4
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 5.9e-34 148.7 168 50.0
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.7e-33 147.1 223 46.2
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 5.7e-29 132.1 198 39.4
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 9.1e-27 124.8 217 36.9
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.2e-25 120.2 232 39.7
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 6.5e-25 118.6 239 33.5
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 7.2e-24 115.2 193 37.3
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 7.2e-24 115.2 99 60.6
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.2e-23 114.4 193 36.8
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.4e-19 100.9 236 33.9
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 1.3e-17 94.4 97 51.5
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 5.0e-17 92.4 84 63.1
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.2e-13 81.3 177 38.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 2.2e-12 77.0 59 61.0
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.2e-10 71.2 50 82.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.6e-10 70.9 40 97.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.6e-10 70.9 64 60.9
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 5.0e-09 65.9 138 40.6


User provided reference genes

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