Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08746 Brassica carinata HOM05D002049 ORTHO05D004501 1.6e-77 292.7 150 100.0
BcaC04g19837 Brassica carinata HOM05D004699 ORTHO05D092684 3.9e-20 102.1 56 92.9
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 5.9e-16 88.2 54 83.3
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 2.9e-15 85.9 54 81.5
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 5.0e-15 85.1 52 82.7
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 9.3e-14 80.9 56 71.4
AL1G61700 Arabidopsis lyrata HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
AT1G53280 Arabidopsis thaliana HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
BcaC01g01374 Brassica carinata HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
BcaC08g43518 Brassica carinata HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
A06p01080 Brassica napus HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
C03p91320 Brassica napus HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
C06p09040 Brassica napus HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
BolC3t21447H Brassica oleracea HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
BolC6t35982H Brassica oleracea HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
BraA06t23335Z Brassica rapa HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
CARHR043510 Cardamine hirsuta HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
Sp1g39860 Schrenkiella parvula HOM05D002049 ORTHO05D002432 1.8e-09 66.6 36 88.9
BcaB04g17093 Brassica carinata HOM05D002049 ORTHO05D002432 2.4e-09 66.2 36 86.1
BcaC05g26864 Brassica carinata HOM05D002049 ORTHO05D017231 2.4e-09 66.2 36 88.9
A08p01690 Brassica napus HOM05D002049 ORTHO05D002432 5.3e-09 65.1 36 86.1
BraA08t32222Z Brassica rapa HOM05D002049 ORTHO05D002432 5.3e-09 65.1 36 86.1
Thhalv10011492m.g Eutrema salsugineum HOM05D002049 ORTHO05D002432 5.3e-09 65.1 36 86.1
BcaB07g33342 Brassica carinata HOM05D002049 ORTHO05D002432 9.1e-09 64.3 36 86.1
BcaB07g31204 Brassica carinata HOM05D004699 ORTHO05D091563 1.2e-08 63.9 33 90.9
Aa31LG10G1870 Aethionema arabicum HOM05D002049 ORTHO05D002432 2.6e-08 62.8 36 83.3
Aa31LG8G2190 Aethionema arabicum HOM05D002049 ORTHO05D017231 2.2e-07 59.7 36 77.8
Aa31LG8G2210 Aethionema arabicum HOM05D002049 ORTHO05D002432 2.2e-07 59.7 36 75.0
Sp3g13190 Schrenkiella parvula HOM05D002049 ORTHO05D002432 2.2e-07 59.7 36 77.8
AL3G27320 Arabidopsis lyrata HOM05D002049 ORTHO05D002432 1.1e-06 57.4 36 75.0
AT3G14990 Arabidopsis thaliana HOM05D002049 ORTHO05D002432 1.1e-06 57.4 36 75.0
Carub.0003s1465 Capsella rubella HOM05D002049 ORTHO05D002432 1.1e-06 57.4 36 75.0
vmacro11920 Vaccinium macrocarpon HOM05D002049 ORTHO05D002432 1.1e-06 57.4 36 72.2
BcaB06g25341 Brassica carinata HOM05D002049 ORTHO05D002432 1.9e-06 56.6 36 72.2
BcaB06g25339 Brassica carinata HOM05D002049 ORTHO05D002432 2.5e-06 56.2 36 72.2
BcaC02g09304 Brassica carinata HOM05D002049 ORTHO05D002432 3.2e-06 55.8 36 72.2
A04p07530 Brassica napus HOM05D002049 ORTHO05D002432 3.2e-06 55.8 36 72.2
C04p41170 Brassica napus HOM05D002049 ORTHO05D002432 3.2e-06 55.8 36 72.2
BolC4t25699H Brassica oleracea HOM05D002049 ORTHO05D002432 3.2e-06 55.8 36 72.2
BraA04t16447Z Brassica rapa HOM05D002049 ORTHO05D002432 3.2e-06 55.8 36 72.2
BcaB06g29527 Brassica carinata HOM05D002049 ORTHO05D002432 4.2e-06 55.5 36 69.4
A05p34430 Brassica napus HOM05D002049 ORTHO05D002432 4.2e-06 55.5 36 69.4
C05p52190 Brassica napus HOM05D002049 ORTHO05D002432 4.2e-06 55.5 36 69.4
BolC5t33905H Brassica oleracea HOM05D002049 ORTHO05D002432 4.2e-06 55.5 36 69.4
BraA05t22262Z Brassica rapa HOM05D002049 ORTHO05D002432 4.2e-06 55.5 36 69.4
CSS0014771 Camellia sinensis var. sinensis HOM05D002049 ORTHO05D002432 4.2e-06 55.5 36 66.7
CSS0043426 Camellia sinensis var. sinensis HOM05D002049 ORTHO05D002432 4.2e-06 55.5 36 66.7
Potri.011G111900 Populus trichocarpa HOM05D002049 ORTHO05D002432 4.2e-06 55.5 36 66.7
Sabra11G0099100 Salix brachista HOM05D002049 ORTHO05D002432 4.2e-06 55.5 36 66.7
BcaB02g08604 Brassica carinata HOM05D002049 ORTHO05D002432 5.5e-06 55.1 36 72.2
MBI07_g33320_MAGBIO Magnolia biondii HOM05D002049 ORTHO05D002432 5.5e-06 55.1 36 69.4
TAR627G0302 Trochodendron aralioides HOM05D002049 ORTHO05D002432 7.2e-06 54.7 36 66.7
MSTRG.12874 Avicennia marina HOM05D002049 ORTHO05D002432 9.4e-06 54.3 36 72.2
ClCG07G010320 Citrullus lanatus HOM05D002049 ORTHO05D002432 9.4e-06 54.3 35 71.4
MELO3C016136.2 Cucumis melo HOM05D002049 ORTHO05D002432 9.4e-06 54.3 35 71.4
CsaV3_4G008010 Cucumis sativus L. HOM05D002049 ORTHO05D002432 9.4e-06 54.3 35 71.4
FAN25G3236 Fragaria x ananassa HOM05D002049 ORTHO05D002432 9.4e-06 54.3 38 60.5
QL08p026708 Quercus lobata HOM05D002049 ORTHO05D002432 9.4e-06 54.3 36 66.7
SalBow7G2775 Salvia bowleyana HOM05D002049 ORTHO05D002432 9.4e-06 54.3 36 72.2
Sed0017535 Sechium edule HOM05D002049 ORTHO05D002432 9.4e-06 54.3 35 71.4


User provided reference genes

Program Settings