Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08710 Brassica carinata HOM05D011028 ORTHO05D027594 4.9e-55 217.6 114 100.0
A04p16860 Brassica napus HOM05D050260 ORTHO05D027594 2.2e-23 112.5 71 83.1
BraA04t17319Z Brassica rapa HOM05D050260 ORTHO05D027594 1.4e-22 109.8 71 80.3
BcaB08g35062 Brassica carinata HOM05D011028 ORTHO05D014935 3.6e-18 95.1 105 48.6
A09p57620 Brassica napus HOM05D011028 ORTHO05D023997 2.0e-16 89.4 106 50.0
BraA09t41154Z Brassica rapa HOM05D011028 ORTHO05D023997 2.0e-16 89.4 106 50.0
A09p57610 Brassica napus HOM05D011028 ORTHO05D014935 1.3e-15 86.7 105 42.9
C08p40810 Brassica napus HOM05D011028 ORTHO05D014935 1.3e-15 86.7 105 42.9
BraA09t41153Z Brassica rapa HOM05D011028 ORTHO05D014935 1.3e-15 86.7 105 42.9
BcaC07g41078 Brassica carinata HOM05D011028 ORTHO05D023997 3.8e-15 85.1 105 47.6
BolC8t51647H Brassica oleracea HOM05D011028 ORTHO05D023997 3.8e-15 85.1 105 47.6
C08p40820 Brassica napus HOM05D011028 ORTHO05D023997 8.4e-15 84.0 105 47.6
AT5G66630 Arabidopsis thaliana HOM05D000909 ORTHO05D000928 1.9e-14 82.8 103 43.7
BcaB08g35058 Brassica carinata HOM05D011028 ORTHO05D014935 3.2e-14 82.0 107 40.2
BcaB04g20245 Brassica carinata HOM05D000529 ORTHO05D000472 2.3e-12 75.9 101 44.6
BcaC07g41077 Brassica carinata HOM05D011028 ORTHO05D014935 6.7e-12 74.3 77 46.8
Sp2g29760 Schrenkiella parvula HOM05D000529 ORTHO05D000472 2.5e-11 72.4 97 41.2
Aa31LG1G15460 Aethionema arabicum HOM05D000529 ORTHO05D000472 5.6e-11 71.2 106 34.9
AL8G44500 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 4.8e-10 68.2 96 41.7
BcaB02g10007 Brassica carinata HOM05D000909 ORTHO05D014935 8.1e-10 67.4 101 37.6
AT5G66900 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 1.8e-09 66.2 96 40.6
C09p11430 Brassica napus HOM05D000529 ORTHO05D000472 5.3e-09 64.7 98 37.8
THA.LOC104819226 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 5.3e-09 64.7 111 36.9
A06p36590 Brassica napus HOM05D000529 ORTHO05D000472 9.0e-09 63.9 102 42.2
BraA06t26585Z Brassica rapa HOM05D000529 ORTHO05D000472 9.0e-09 63.9 102 42.2
Carub.0008s2759 Capsella rubella HOM05D000529 ORTHO05D000472 9.0e-09 63.9 96 40.6
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 1.2e-08 63.5 99 36.4
C07p37490 Brassica napus HOM05D011028 ORTHO05D014935 1.2e-08 63.5 101 39.6
Sp2g29750 Schrenkiella parvula HOM05D000529 ORTHO05D000472 1.2e-08 63.5 97 39.2
BcaC04g23168 Brassica carinata HOM05D000529 ORTHO05D000472 2.0e-08 62.8 96 38.5
BcaC04g23170 Brassica carinata HOM05D000529 ORTHO05D000472 2.0e-08 62.8 98 36.7
C09p11460 Brassica napus HOM05D000529 ORTHO05D000472 2.0e-08 62.8 96 38.5
BolC9t54031H Brassica oleracea HOM05D000529 ORTHO05D000472 2.0e-08 62.8 98 36.7
AT5G66910 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 2.6e-08 62.4 110 36.4
BolC7t43050H Brassica oleracea HOM05D000909 ORTHO05D000928 2.6e-08 62.4 99 36.4
Thhalv10005443m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 2.6e-08 62.4 99 40.4
A09p09670 Brassica napus HOM05D000529 ORTHO05D000472 7.6e-08 60.8 96 37.5
BraA09t36615Z Brassica rapa HOM05D000529 ORTHO05D000472 7.6e-08 60.8 96 37.5
BraA06t27024Z Brassica rapa HOM05D000529 ORTHO05D000472 9.9e-08 60.5 100 36.0
CARHR289030 Cardamine hirsuta HOM05D000529 ORTHO05D000472 9.9e-08 60.5 100 36.0
C07p36780 Brassica napus HOM05D000529 ORTHO05D000472 2.2e-07 59.3 110 32.7
A06p41020 Brassica napus HOM05D000529 ORTHO05D000472 2.9e-07 58.9 100 35.0
BraA06t27026Z Brassica rapa HOM05D000529 ORTHO05D000472 2.9e-07 58.9 100 35.0
BcaB04g20089 Brassica carinata HOM05D000529 ORTHO05D000472 3.8e-07 58.5 97 38.1
C07p36750 Brassica napus HOM05D000529 ORTHO05D000472 3.8e-07 58.5 100 36.0
BolC7t44191H Brassica oleracea HOM05D000529 ORTHO05D000472 3.8e-07 58.5 100 36.0
BcaC06g33738 Brassica carinata HOM05D011028 ORTHO05D014935 4.9e-07 58.2 87 41.4
BcaC06g33796 Brassica carinata HOM05D000529 ORTHO05D014935 4.9e-07 58.2 99 36.4
BcaC06g33798 Brassica carinata HOM05D011028 ORTHO05D014935 4.9e-07 58.2 99 36.4
Thhalv10003662m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 4.9e-07 58.2 97 38.1
A07p17000 Brassica napus HOM05D000529 ORTHO05D000472 1.4e-06 56.6 99 36.4
C02p64690 Brassica napus HOM05D000529 ORTHO05D000472 1.4e-06 56.6 96 34.4
C07p36720 Brassica napus HOM05D000529 ORTHO05D000472 1.4e-06 56.6 99 35.4
BolC2t12531H Brassica oleracea HOM05D000529 ORTHO05D000472 1.4e-06 56.6 96 34.4
BolC7t44188H Brassica oleracea HOM05D000529 ORTHO05D000472 1.4e-06 56.6 99 35.4
BraA07t29427Z Brassica rapa HOM05D000529 ORTHO05D000472 1.4e-06 56.6 99 36.4
BcaB02g09974 Brassica carinata HOM05D000529 ORTHO05D000472 1.9e-06 56.2 98 37.8
A02p38850 Brassica napus HOM05D000529 ORTHO05D000472 3.2e-06 55.5 97 40.2
BraA02t08859Z Brassica rapa HOM05D000529 ORTHO05D000472 4.2e-06 55.1 97 40.2
BcaC03g17818 Brassica carinata HOM05D000529 ORTHO05D000472 7.1e-06 54.3 99 39.4
C02p58420 Brassica napus HOM05D000529 ORTHO05D000472 7.1e-06 54.3 99 39.4
BolC2t11905H Brassica oleracea HOM05D000529 ORTHO05D027594 7.1e-06 54.3 99 39.4
BcaB04g20091 Brassica carinata HOM05D000529 ORTHO05D000472 9.3e-06 53.9 100 38.0
BcaC06g33794 Brassica carinata HOM05D000529 ORTHO05D000472 9.3e-06 53.9 99 35.4


User provided reference genes

Program Settings