Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08597 Brassica carinata HOM05D002272 ORTHO05D019870 4.0e-44 181.0 91 100.0
BcaC02g11409 Brassica carinata HOM05D002272 ORTHO05D019870 7.4e-22 107.1 56 92.9
BcaC02g10038 Brassica carinata HOM05D002055 ORTHO05D031805 6.9e-20 100.5 58 93.1
BcaB04g20838 Brassica carinata HOM05D002272 ORTHO05D005405 1.3e-18 96.3 69 69.6
Thhalv10021142m.g Eutrema salsugineum HOM05D002272 ORTHO05D005405 1.7e-18 95.9 57 77.2
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 5.0e-18 94.4 57 77.2
C01p46710 Brassica napus HOM05D002272 ORTHO05D005405 8.5e-18 93.6 69 68.1
BolC1t04639H Brassica oleracea HOM05D002272 ORTHO05D005405 8.5e-18 93.6 69 68.1
Dinv29507 Davidia involucrata HOM05D002272 ORTHO05D005405 1.1e-17 93.2 57 71.9
Sp3g15640 Schrenkiella parvula HOM05D002272 ORTHO05D005405 1.1e-17 93.2 69 68.1
BraA01t03740Z Brassica rapa HOM05D002272 ORTHO05D005405 1.4e-17 92.8 69 68.1
Gohir.A02G058500 Gossypium hirsutum HOM05D002272 ORTHO05D005405 1.4e-17 92.8 57 73.7
Gohir.D02G064300 Gossypium hirsutum HOM05D002272 ORTHO05D005405 1.4e-17 92.8 57 73.7
Gorai.005G072600 Gossypium raimondii HOM05D002272 ORTHO05D005405 1.4e-17 92.8 57 73.7
PGR004G1245 Punica granatum HOM05D002272 ORTHO05D005405 1.4e-17 92.8 57 71.9
Carub.0003s1719 Capsella rubella HOM05D002272 ORTHO05D005405 2.5e-17 92.0 57 77.2
Sabra10G0001800 Salix brachista HOM05D002272 ORTHO05D005405 2.5e-17 92.0 57 70.2
AT3G17465 Arabidopsis thaliana HOM05D002272 ORTHO05D005405 3.2e-17 91.7 57 73.7
BcaC05g28788 Brassica carinata HOM05D002272 ORTHO05D005405 3.2e-17 91.7 69 68.1
A05p32330 Brassica napus HOM05D002272 ORTHO05D005405 3.2e-17 91.7 69 68.1
BraA05t22061Z Brassica rapa HOM05D002272 ORTHO05D005405 3.2e-17 91.7 69 68.1
CiPaw.02G069200 Carya illinoinensis HOM05D002272 ORTHO05D005405 3.2e-17 91.7 69 62.3
vmacro08012 Vaccinium macrocarpon HOM05D002272 ORTHO05D005405 3.2e-17 91.7 57 70.2
BcaB06g25841 Brassica carinata HOM05D002272 ORTHO05D005405 4.2e-17 91.3 69 68.1
Lj3g0022905 Lotus japonicus HOM05D002272 ORTHO05D005405 4.2e-17 91.3 57 70.2
Potri.010G002300 Populus trichocarpa HOM05D002272 ORTHO05D005405 4.2e-17 91.3 57 68.4
Sed0028101 Sechium edule HOM05D002272 ORTHO05D005405 4.2e-17 91.3 57 66.7
CARHR092790 Cardamine hirsuta HOM05D002272 ORTHO05D005405 5.5e-17 90.9 57 71.9
Potri.008G207000 Populus trichocarpa HOM05D002272 ORTHO05D005405 5.5e-17 90.9 49 75.5
AL3G30550 Arabidopsis lyrata HOM05D002272 ORTHO05D005405 7.2e-17 90.5 57 73.7
BcaB04g18943 Brassica carinata HOM05D002272 ORTHO05D005405 7.2e-17 90.5 69 66.7
Nn4g26701 Nelumbo nucifera HOM05D002272 ORTHO05D005405 7.2e-17 90.5 69 60.9
Psat1g056160 Pisum sativum HOM05D002272 ORTHO05D005405 7.2e-17 90.5 57 70.2
THA.LOC104815360 Tarenaya hassleriana HOM05D002272 ORTHO05D005405 7.2e-17 90.5 57 71.9
TPR.G2257 Trifolium pratense HOM05D002272 ORTHO05D005405 7.2e-17 90.5 57 70.2
CiPaw.01G129200 Carya illinoinensis HOM05D002272 ORTHO05D005405 9.3e-17 90.1 69 63.8
TWI75G1791 Tripterygium wilfordii HOM05D002272 ORTHO05D005405 9.3e-17 90.1 57 70.2
A01p36790 Brassica napus HOM05D002272 ORTHO05D005405 1.2e-16 89.7 69 66.7
CSS0028739 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 1.2e-16 89.7 57 68.4
ClCG05G006870 Citrullus lanatus HOM05D002272 ORTHO05D005405 1.2e-16 89.7 69 59.4
Phvul.005G012100 Phaseolus vulgaris HOM05D002272 ORTHO05D005405 1.2e-16 89.7 57 68.4
Sabra08G0150200 Salix brachista HOM05D002272 ORTHO05D005405 1.2e-16 89.7 57 66.7
Cpa.g.sc146.23 Carica papaya HOM05D002272 ORTHO05D005405 1.6e-16 89.4 57 66.7
Lj6A701G45 Lonicera japonica HOM05D002272 ORTHO05D005405 1.6e-16 89.4 57 66.7
Actinidia01065 Actinidia chinensis HOM05D002272 ORTHO05D005405 2.1e-16 89.0 57 68.4
C05p48970 Brassica napus HOM05D002272 ORTHO05D005405 2.1e-16 89.0 69 66.7
BolC5t33637H Brassica oleracea HOM05D002272 ORTHO05D005405 2.1e-16 89.0 69 66.7
Rhsim04G0248300 Rhododendron simsii HOM05D002272 ORTHO05D005405 2.1e-16 89.0 57 66.7
Sc18g0007250 Simmondsia chinensis HOM05D002272 ORTHO05D005405 2.1e-16 89.0 57 68.4
TPR.G18850 Trifolium pratense HOM05D002272 ORTHO05D005405 2.1e-16 89.0 57 70.2
Dinv18018 Davidia involucrata HOM05D002272 ORTHO05D005405 2.7e-16 88.6 69 62.3
QL06p014217 Quercus lobata HOM05D002272 ORTHO05D005405 2.7e-16 88.6 57 64.9
TAR636G1706 Trochodendron aralioides HOM05D002272 ORTHO05D005405 2.7e-16 88.6 69 59.4
VMungo1080G0714 Vigna mungo HOM05D002272 ORTHO05D005405 2.7e-16 88.6 57 66.7
Actinidia18507 Actinidia chinensis HOM05D002272 ORTHO05D005405 3.6e-16 88.2 57 66.7
MD13G1139500 Malus domestica HOM05D002272 ORTHO05D005405 3.6e-16 88.2 69 62.3
MD16G1136200 Malus domestica HOM05D002272 ORTHO05D005405 3.6e-16 88.2 69 62.3
PSO541G1920 Papaver somniferum HOM05D002272 ORTHO05D005405 3.6e-16 88.2 57 64.9
PSO761G0243 Papaver somniferum HOM05D002272 ORTHO05D005405 3.6e-16 88.2 57 64.9
Sed0025255 Sechium edule HOM05D002272 ORTHO05D005405 3.6e-16 88.2 57 66.7
CANSAT78G0846 Cannabis sativa HOM05D002272 ORTHO05D005405 4.6e-16 87.8 57 66.7
Medtr1g093060 Medicago truncatula HOM05D002272 ORTHO05D005405 4.6e-16 87.8 57 68.4
Prupe.1G105200 Prunus persica HOM05D002272 ORTHO05D005405 4.6e-16 87.8 57 68.4
PGSC0003DMG400014202 Solanum tuberosum HOM05D002272 ORTHO05D005405 4.6e-16 87.8 57 68.4
BolC4t26787H Brassica oleracea HOM05D002272 ORTHO05D019870 6.1e-16 87.4 39 100.0
COL.COLO4_34516 Corchorus olitorius HOM05D002272 ORTHO05D005405 6.1e-16 87.4 59 66.1
Glyma.13G276300 Glycine max HOM05D002272 ORTHO05D005405 6.1e-16 87.4 57 64.9
HanXRQChr05g0149261 Helianthus annuus HOM05D002272 ORTHO05D005405 6.1e-16 87.4 57 64.9
Medtr6g006970 Medicago truncatula HOM05D002272 ORTHO05D005405 6.1e-16 87.4 57 66.7
Sopen03g036210 Solanum pennellii HOM05D002272 ORTHO05D005405 6.1e-16 87.4 57 66.7
arahy.Tifrunner.gnm1.ann1.E0PE5U Arachis hypogaea HOM05D002272 ORTHO05D005405 7.9e-16 87.0 57 64.9
arahy.Tifrunner.gnm1.ann1.Z0DKXY Arachis hypogaea HOM05D002272 ORTHO05D005405 7.9e-16 87.0 57 64.9
CDE01G0206 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 7.9e-16 87.0 57 64.9
Haze_00766 Corylus avellana HOM05D002272 ORTHO05D005405 7.9e-16 87.0 57 64.9
MELO3C006752.2 Cucumis melo HOM05D002272 ORTHO05D005405 7.9e-16 87.0 69 58.0
Glyma.12G225000 Glycine max HOM05D002272 ORTHO05D005405 7.9e-16 87.0 57 63.2
MBI13_g24903_MAGBIO Magnolia biondii HOM05D002272 ORTHO05D005405 7.9e-16 87.0 57 64.9
Nitab4.5_0001437g0040 Nicotiana tabacum HOM05D002272 ORTHO05D005405 7.9e-16 87.0 57 66.7
PSO210G1506 Papaver somniferum HOM05D002272 ORTHO05D005405 7.9e-16 87.0 57 63.2
Rhsim10G0078600 Rhododendron simsii HOM05D002272 ORTHO05D005405 7.9e-16 87.0 57 66.7
RcHm_v2.0_Chr4g0427531 Rosa chinensis HOM05D002272 ORTHO05D005405 7.9e-16 87.0 69 59.4
arahy.Tifrunner.gnm1.ann1.IDQN4N Arachis hypogaea HOM05D002272 ORTHO05D005405 1.0e-15 86.7 49 73.5
EL10Ac5g11978 Beta vulgaris HOM05D002272 ORTHO05D005405 1.0e-15 86.7 59 66.1
CDE12G0965 Ceratophyllum demersum HOM05D002272 ORTHO05D005405 1.0e-15 86.7 57 63.2
DCAR_002551 Daucus carota HOM05D002272 ORTHO05D005405 1.0e-15 86.7 57 64.9
Duzib212G0306 Durio zibethinus HOM05D002272 ORTHO05D005405 1.0e-15 86.7 69 59.4
Nitab4.5_0005622g0030 Nicotiana tabacum HOM05D002272 ORTHO05D005405 1.0e-15 86.7 57 66.7
GSVIVG01017688001 Vitis vinifera HOM05D002272 ORTHO05D005405 1.0e-15 86.7 69 59.4
AUR62007379 Chenopodium quinoa HOM05D002272 ORTHO05D005405 1.4e-15 86.3 59 66.1
AUR62018609 Chenopodium quinoa HOM05D002272 ORTHO05D005405 1.4e-15 86.3 59 66.1
Nitab4.5_0002322g0100 Nicotiana tabacum HOM05D002272 ORTHO05D005405 1.4e-15 86.3 57 66.7
TAR365G0404 Trochodendron aralioides HOM05D002272 ORTHO05D005405 1.4e-15 86.3 69 59.4
HPP92_026061 Vanilla planifolia HOM05D002272 ORTHO05D005405 1.4e-15 86.3 57 64.9
CSS0045814 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 1.8e-15 85.9 57 66.7
Cfa015730 Carpinus fangiana HOM05D002272 ORTHO05D005405 1.8e-15 85.9 57 63.2
FvH4_4g21510 Fragaria vesca HOM05D002272 ORTHO05D005405 1.8e-15 85.9 69 58.0
FAN07G0753 Fragaria x ananassa HOM05D002272 ORTHO05D005405 1.8e-15 85.9 69 58.0
FAN12G3762 Fragaria x ananassa HOM05D002272 ORTHO05D005405 1.8e-15 85.9 69 58.0
FAN17G2520 Fragaria x ananassa HOM05D002272 ORTHO05D005405 1.8e-15 85.9 69 58.0
Oeu035504.2 Olea europaea HOM05D002272 ORTHO05D005405 1.8e-15 85.9 49 75.5
CAN.G407.30 Capsicum annuum HOM05D002272 ORTHO05D005405 2.3e-15 85.5 57 64.9
Eucgr.H04124 Eucalyptus grandis HOM05D002272 ORTHO05D005405 2.3e-15 85.5 57 68.4
ATR0796G018 Amborella trichopoda HOM05D002272 ORTHO05D005405 3.0e-15 85.1 69 55.1
arahy.Tifrunner.gnm1.ann1.39Z329 Arachis hypogaea HOM05D002272 ORTHO05D005405 3.0e-15 85.1 57 61.4
Ca_06467_v3 Cicer arietinum L. HOM05D002272 ORTHO05D005405 3.0e-15 85.1 57 63.2
Lsat_1_v5_gn_6_118081 Lactuca sativa HOM05D002272 ORTHO05D005405 3.0e-15 85.1 57 63.2
MSTRG.10168 Avicennia marina HOM05D002272 ORTHO05D005405 3.9e-15 84.7 57 66.7
Lalb_Chr04g0247221 Lupinus albus HOM05D002272 ORTHO05D005405 3.9e-15 84.7 57 63.2
SGA_v2.0_scaffold157G37389 Striga asiatica HOM05D002272 ORTHO05D005405 3.9e-15 84.7 57 64.9
unitig_8.g3105 Utricularia gibba HOM05D002272 ORTHO05D005405 3.9e-15 84.7 57 63.2
CsaV3_3G015540 Cucumis sativus L. HOM05D002272 ORTHO05D005405 5.1e-15 84.3 69 56.5
Hma1.2p1_0013F.1_g007910 Hydrangea macrophylla HOM05D002272 ORTHO05D005405 5.1e-15 84.3 57 61.4
Ah.07g201130 Amaranthus hybridus HOM05D002272 ORTHO05D005405 1.1e-14 83.2 59 62.7
Hund14390 Selenicereus undatus HOM05D002272 ORTHO05D005405 1.1e-14 83.2 59 59.3
Thecc.04G313100 Theobroma cacao HOM05D002272 ORTHO05D005405 1.1e-14 83.2 69 59.4
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.5e-14 82.8 57 59.6
Aqoxy5G02803 Aquilegia oxysepala HOM05D002272 ORTHO05D005405 2.5e-14 82.0 57 59.6
ECA246G1461 Erigeron canadensis HOM05D002272 ORTHO05D005405 2.5e-14 82.0 57 61.4
PGSC0003DMG401013065 Solanum tuberosum HOM05D002272 ORTHO05D005405 3.3e-14 81.6 57 64.9
Zm00001eb333790 Zea mays HOM05D002272 ORTHO05D005405 3.3e-14 81.6 57 56.1
Ciclev10007196m.g Citrus clementina HOM05D002272 ORTHO05D005405 5.7e-14 80.9 57 64.9
Manes.02G178300 Manihot esculenta HOM05D002272 ORTHO05D005405 5.7e-14 80.9 60 60.0
Os01g0251100 Oryza sativa ssp. japonica HOM05D002272 ORTHO05D005405 7.4e-14 80.5 57 56.1
Migut.G00004 Erythranthe guttata HOM05D002272 ORTHO05D005405 9.7e-14 80.1 57 63.2
Migut.O00400 Erythranthe guttata HOM05D002272 ORTHO05D005405 9.7e-14 80.1 57 63.2
Migut.O00895 Erythranthe guttata HOM05D002272 ORTHO05D005405 9.7e-14 80.1 57 63.2
SalBow8G2239 Salvia bowleyana HOM05D002272 ORTHO05D005405 9.7e-14 80.1 57 64.9
arahy.Tifrunner.gnm1.ann1.VQU8DB Arachis hypogaea HOM05D002272 ORTHO05D005405 1.7e-13 79.3 49 67.3
SEGI_07728 Sequoiadendron giganteum HOM05D002272 ORTHO05D005405 2.8e-13 78.6 69 53.6
Mapoly0162s0018 Marchantia polymorpha HOM05D002272 ORTHO05D005405 3.7e-13 78.2 69 52.2
Peaxi162Scf00126g01027 Petunia axillaris HOM05D002272 ORTHO05D005405 4.8e-13 77.8 49 67.3
Atru.chr4.3151 Acer truncatum HOM05D002272 ORTHO05D005405 6.3e-13 77.4 57 57.9
VMungo0331G0401 Vigna mungo HOM05D002272 ORTHO05D005405 3.1e-12 75.1 49 61.2
Cc03_g00130 Coffea canephora HOM05D002272 ORTHO05D005405 4.1e-12 74.7 69 55.1
SMO119G0282 Selaginella moellendorffii HOM05D002272 ORTHO05D005405 5.3e-12 74.3 69 49.3
BolC6t38344H Brassica oleracea HOM05D002272 ORTHO05D019870 3.4e-11 71.6 32 100.0
CBR_g27892 Chara braunii HOM05D002272 ORTHO05D005405 1.0e-10 70.1 55 49.1
Pp3c23_18210 Physcomitrium patens HOM05D002272 ORTHO05D005405 1.7e-10 69.3 53 56.6
MCO04G432 Micromonas commoda HOM05D002272 ORTHO05D005405 3.2e-09 65.1 58 50.0
BcaC01g03762 Brassica carinata HOM05D002272 ORTHO05D005405 3.6e-08 61.6 53 58.5
C03p48850 Brassica napus HOM05D002272 ORTHO05D005405 7.9e-08 60.5 40 67.5
BolC3t17166H Brassica oleracea HOM05D002272 ORTHO05D005405 7.9e-08 60.5 40 67.5
SMO115G0095 Selaginella moellendorffii HOM05D002272 ORTHO05D019870 5.1e-07 57.8 55 47.3


User provided reference genes

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