Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08589 Brassica carinata HOM05D001756 ORTHO05D001581 8.8e-41 169.9 86 100.0
BolC4t26796H Brassica oleracea HOM05D001756 ORTHO05D001581 8.8e-41 169.9 86 100.0
C04p52190 Brassica napus HOM05D001756 ORTHO05D001581 5.7e-40 167.2 86 98.8
BcaB06g27846 Brassica carinata HOM05D001756 ORTHO05D001581 6.3e-39 163.7 86 96.5
A04p17430 Brassica napus HOM05D001756 ORTHO05D001581 1.8e-38 162.2 86 95.3
BraA04t17366Z Brassica rapa HOM05D001756 ORTHO05D001581 1.8e-38 162.2 86 95.3
Sp4g01910 Schrenkiella parvula HOM05D001756 ORTHO05D001581 2.6e-32 141.7 88 81.8
AL4G12440 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 1.0e-28 129.8 88 77.3
Thhalv10000381m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 2.2e-28 128.6 87 80.5
CARHR114180 Cardamine hirsuta HOM05D001756 ORTHO05D001581 8.5e-28 126.7 84 78.6
CARHR114170 Cardamine hirsuta HOM05D001756 ORTHO05D001581 5.5e-27 124.0 84 76.2
Carub.0004s0199 Capsella rubella HOM05D001756 ORTHO05D001581 4.7e-26 120.9 88 71.6
AT2G22860 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 4.0e-25 117.9 86 74.4
THA.LOC104819883 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 4.5e-21 104.4 86 62.8
THA.LOC104804198 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 7.2e-19 97.1 84 56.0
CARHR246110 Cardamine hirsuta HOM05D012092 ORTHO05D001581 3.4e-16 88.2 83 61.4
Sp7g35370 Schrenkiella parvula HOM05D012092 ORTHO05D001581 9.8e-16 86.7 83 62.7
AT4G37720 Arabidopsis thaliana HOM05D012092 ORTHO05D001581 2.2e-15 85.5 83 56.6
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 1.1e-14 83.2 81 54.3
A08p22740 Brassica napus HOM05D012092 ORTHO05D001581 5.4e-14 80.9 83 59.0
BraA08t34243Z Brassica rapa HOM05D012092 ORTHO05D001581 5.4e-14 80.9 83 59.0
Carub.0007s0253 Capsella rubella HOM05D012092 ORTHO05D001581 9.1e-14 80.1 85 58.8
BcaB03g12333 Brassica carinata HOM05D012092 ORTHO05D001581 1.6e-13 79.3 87 55.2
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 2.7e-13 78.6 85 56.5
AL7G12960 Arabidopsis lyrata HOM05D012092 ORTHO05D001581 3.8e-12 74.7 65 60.0
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 3.8e-12 74.7 83 48.2
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 3.8e-12 74.7 82 50.0
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 6.6e-12 73.9 83 48.2
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 1.5e-11 72.8 83 49.4
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 4.2e-11 71.2 83 53.0
Actinidia16413 Actinidia chinensis HOM05D001756 ORTHO05D001581 7.2e-11 70.5 80 51.2
Thhalv10026843m.g Eutrema salsugineum HOM05D012092 ORTHO05D001581 9.5e-11 70.1 83 55.4
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 1.2e-10 69.7 77 50.6
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 1.2e-10 69.7 83 50.6
BcaNung02085 Brassica carinata HOM05D012092 ORTHO05D001581 2.1e-10 68.9 81 50.6
C07p62600 Brassica napus HOM05D012092 ORTHO05D001581 2.1e-10 68.9 81 50.6
BolC7t46675H Brassica oleracea HOM05D012092 ORTHO05D001581 2.1e-10 68.9 81 50.6
A03p65500 Brassica napus HOM05D012092 ORTHO05D001581 2.8e-10 68.6 81 50.6
BraA03t15602Z Brassica rapa HOM05D012092 ORTHO05D001581 2.8e-10 68.6 81 50.6
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 3.6e-10 68.2 84 50.0
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 3.6e-10 68.2 76 51.3
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 4.7e-10 67.8 77 50.6
AL5G29770 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 8.0e-10 67.0 83 49.4
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 8.0e-10 67.0 84 48.8
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 8.0e-10 67.0 76 48.7
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.0e-09 66.6 83 48.2
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 1.0e-09 66.6 83 43.4
Hma1.2p1_0424F.1_g150520 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.4e-09 66.2 83 45.8
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 1.4e-09 66.2 80 50.0
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.3e-09 65.5 83 45.8
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.3e-09 65.5 77 48.1
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 2.3e-09 65.5 77 50.6
AT3G49780 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 3.0e-09 65.1 83 48.2
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 3.0e-09 65.1 76 48.7
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 3.0e-09 65.1 83 50.6
Dinv26955 Davidia involucrata HOM05D001756 ORTHO05D001581 4.0e-09 64.7 84 47.6
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 5.2e-09 64.3 87 44.8
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.2e-09 64.3 83 47.0
Hma1.2p1_1051F.1_g252120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 5.2e-09 64.3 84 47.6
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 6.8e-09 63.9 84 46.4
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 6.8e-09 63.9 83 47.0
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 6.8e-09 63.9 83 44.6
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 8.9e-09 63.5 83 44.6
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 1.2e-08 63.2 83 47.0
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 1.2e-08 63.2 83 47.0
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 1.2e-08 63.2 83 47.0
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 1.5e-08 62.8 79 48.1
Rhsim08G0091400 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.5e-08 62.8 75 49.3
Rhsim08G0091500 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.5e-08 62.8 75 48.0
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 1.5e-08 62.8 80 48.8
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 1.5e-08 62.8 74 45.9
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.0e-08 62.4 83 45.8
AUR62004029 Chenopodium quinoa HOM05D001756 ORTHO05D001581 2.0e-08 62.4 89 44.9
Rhsim08G0091000 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.0e-08 62.4 80 50.0
vmacro01948 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 2.0e-08 62.4 82 47.6
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 2.6e-08 62.0 83 47.0
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 2.6e-08 62.0 83 47.0
Duzib264G0169 Durio zibethinus HOM05D001756 ORTHO05D001581 2.6e-08 62.0 88 42.0
FvH4_2g32750 Fragaria vesca HOM05D001756 ORTHO05D001581 2.6e-08 62.0 85 45.9
FAN24G1728 Fragaria x ananassa HOM05D001756 ORTHO05D001581 2.6e-08 62.0 85 45.9
Oeu025312.1 Olea europaea HOM05D001756 ORTHO05D001581 2.6e-08 62.0 84 40.5
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.6e-08 62.0 84 47.6
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.6e-08 62.0 84 47.6
C01p30590 Brassica napus HOM05D001756 ORTHO05D001581 4.4e-08 61.2 84 46.4
BolC1t02995H Brassica oleracea HOM05D001756 ORTHO05D001581 4.4e-08 61.2 84 46.4
COL.COLO4_11608 Corchorus olitorius HOM05D001756 ORTHO05D001581 4.4e-08 61.2 83 43.4
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 4.4e-08 61.2 89 43.8
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 4.4e-08 61.2 80 47.5
CAN.G1343.2 Capsicum annuum HOM05D001756 ORTHO05D001581 5.7e-08 60.8 78 44.9
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 5.7e-08 60.8 83 47.0
CiPaw.06G164100 Carya illinoinensis HOM05D001756 ORTHO05D001581 7.5e-08 60.5 84 45.2
CDE04G0180 Ceratophyllum demersum HOM05D001756 ORTHO05D001581 7.5e-08 60.5 82 42.7
FAN27G1437 Fragaria x ananassa HOM05D001756 ORTHO05D001581 7.5e-08 60.5 86 45.3
A01p24530 Brassica napus HOM05D001756 ORTHO05D001581 9.8e-08 60.1 84 45.2
BraA01t02363Z Brassica rapa HOM05D001756 ORTHO05D001581 9.8e-08 60.1 84 45.2
AUR62007537 Chenopodium quinoa HOM05D001756 ORTHO05D001581 9.8e-08 60.1 83 49.4
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 9.8e-08 60.1 85 45.9
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 9.8e-08 60.1 78 46.2
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.3e-07 59.7 86 41.9
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 1.3e-07 59.7 83 45.8
TWI23G1082 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 1.3e-07 59.7 80 48.8
EL10Ac6g15597 Beta vulgaris HOM05D001756 ORTHO05D001581 1.7e-07 59.3 84 47.6
BcaB05g23153 Brassica carinata HOM05D001756 ORTHO05D001581 1.7e-07 59.3 74 48.6
BcaC09g49971 Brassica carinata HOM05D001756 ORTHO05D001581 2.2e-07 58.9 75 49.3
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.2e-07 58.9 86 40.7
Potri.002G116300 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.2e-07 58.9 84 41.7
QL12p038416 Quercus lobata HOM05D001756 ORTHO05D001581 2.2e-07 58.9 84 41.7
SalBow6G1126 Salvia bowleyana HOM05D001756 ORTHO05D001581 2.2e-07 58.9 85 48.2
Actinidia00357 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.8e-07 58.5 72 48.6
CiPaw.02G001200 Carya illinoinensis HOM05D001756 ORTHO05D001581 2.8e-07 58.5 82 42.7
Glyma.17G233500 Glycine max HOM05D001756 ORTHO05D001581 2.8e-07 58.5 82 39.0
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 2.8e-07 58.5 81 48.1
Prupe.1G420000 Prunus persica HOM05D001756 ORTHO05D001581 2.8e-07 58.5 80 47.5
RcHm_v2.0_Chr6g0309921 Rosa chinensis HOM05D001756 ORTHO05D001581 2.8e-07 58.5 88 44.3
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 2.8e-07 58.5 80 43.8
FAN15G0430 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.7e-07 58.2 86 43.0
Gohir.D11G210700 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.7e-07 58.2 95 42.1
Gorai.007G226000 Gossypium raimondii HOM05D001756 ORTHO05D001581 3.7e-07 58.2 95 42.1
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 3.7e-07 58.2 92 42.4
Manes.12G117100 Manihot esculenta HOM05D001756 ORTHO05D001581 3.7e-07 58.2 77 49.4
vmacro18016 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 3.7e-07 58.2 86 45.3
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 4.9e-07 57.8 74 50.0
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 4.9e-07 57.8 74 48.6
COL.COLO4_28472 Corchorus olitorius HOM05D001756 ORTHO05D001581 4.9e-07 57.8 83 43.4
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 4.9e-07 57.8 92 42.4
TWI77G0501 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 4.9e-07 57.8 72 45.8
CAN.G1343.3 Capsicum annuum HOM05D001756 ORTHO05D001581 6.3e-07 57.4 77 41.6
CsaV3_6G044290 Cucumis sativus L. HOM05D001756 ORTHO05D001581 6.3e-07 57.4 81 43.2
Duzib187G0009 Durio zibethinus HOM05D001756 ORTHO05D001581 8.3e-07 57.0 83 44.6
Eucgr.I00676 Eucalyptus grandis HOM05D001756 ORTHO05D001581 8.3e-07 57.0 76 44.7
Glyma.14G089063 Glycine max HOM05D001756 ORTHO05D001581 8.3e-07 57.0 82 36.6
Manes.07G057300 Manihot esculenta HOM05D001756 ORTHO05D001581 8.3e-07 57.0 76 43.4
Nitab4.5_0000142g0340 Nicotiana tabacum HOM05D001756 ORTHO05D001581 8.3e-07 57.0 76 48.7
PGR004G0933 Punica granatum HOM05D001756 ORTHO05D001581 8.3e-07 57.0 81 48.1
PGSC0003DMG400021407 Solanum tuberosum HOM05D001756 ORTHO05D001581 8.3e-07 57.0 74 43.2
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 8.3e-07 57.0 82 41.5
Atru.chr5.2299 Acer truncatum HOM05D001756 ORTHO05D001581 1.1e-06 56.6 78 44.9
Oeu028918.1 Olea europaea HOM05D001756 ORTHO05D001581 1.1e-06 56.6 84 39.3
GSVIVG01009309001 Vitis vinifera HOM05D001756 ORTHO05D001581 1.1e-06 56.6 87 46.0
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.4e-06 56.2 80 45.0
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 1.4e-06 56.2 80 46.2
Glyma.17G233400 Glycine max HOM05D001756 ORTHO05D001581 1.4e-06 56.2 83 37.3
Psat2g172320 Pisum sativum HOM05D001756 ORTHO05D001581 1.4e-06 56.2 80 40.0
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 1.8e-06 55.8 83 45.8
Nitab4.5_0002525g0020 Nicotiana tabacum HOM05D001756 ORTHO05D001581 1.8e-06 55.8 81 39.5
THA.LOC104825794 Tarenaya hassleriana HOM05D001756 ORTHO05D015390 1.8e-06 55.8 80 41.2
Dinv23040 Davidia involucrata HOM05D001756 ORTHO05D001581 2.4e-06 55.5 85 44.7
Migut.B00462 Erythranthe guttata HOM05D001756 ORTHO05D001581 2.4e-06 55.5 78 42.3
Gohir.A11G212500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.4e-06 55.5 92 42.4
PGR042G3192 Punica granatum HOM05D001756 ORTHO05D001581 2.4e-06 55.5 77 48.1
CSS0014839 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 3.1e-06 55.1 87 41.4
CSS0047712 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 3.1e-06 55.1 87 41.4
CiPaw.05G020600 Carya illinoinensis HOM05D001756 ORTHO05D001581 3.1e-06 55.1 77 45.5
HanXRQChr12g0376281 Helianthus annuus HOM05D001756 ORTHO05D001581 3.1e-06 55.1 75 46.7
BcaC06g33373 Brassica carinata HOM05D012092 ORTHO05D001581 4.1e-06 54.7 70 50.0
Glyma.06G048200 Glycine max HOM05D001756 ORTHO05D001581 4.1e-06 54.7 73 47.9
arahy.Tifrunner.gnm1.ann1.APU27B Arachis hypogaea HOM05D001756 ORTHO05D001581 5.4e-06 54.3 86 37.2
Ciclev10029689m.g Citrus clementina HOM05D001756 ORTHO05D001581 5.4e-06 54.3 61 42.6
ECA238G4790 Erigeron canadensis HOM05D001756 ORTHO05D001581 5.4e-06 54.3 76 47.4
Solyc02g092110.3 Solanum lycopersicum HOM05D001756 ORTHO05D001581 5.4e-06 54.3 75 46.7
Solyc02g092120.3 Solanum lycopersicum HOM05D001756 ORTHO05D001581 5.4e-06 54.3 74 45.9
arahy.Tifrunner.gnm1.ann1.200WTN Arachis hypogaea HOM05D001756 ORTHO05D001581 7.0e-06 53.9 86 37.2
CSS0048277 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 7.0e-06 53.9 80 41.2
CSS0049317 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 7.0e-06 53.9 80 41.2
Gohir.D06G022100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 7.0e-06 53.9 83 42.2
Gorai.010G026700 Gossypium raimondii HOM05D001756 ORTHO05D001581 7.0e-06 53.9 83 42.2
Rhsim06G0064100 Rhododendron simsii HOM05D001756 ORTHO05D001581 7.0e-06 53.9 84 45.2
Sopen02g036710 Solanum pennellii HOM05D001756 ORTHO05D001581 7.0e-06 53.9 74 45.9
PGSC0003DMG400021406 Solanum tuberosum HOM05D001756 ORTHO05D001581 7.0e-06 53.9 75 46.7
Ca_24672_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 9.2e-06 53.5 79 38.0
Ca_30012_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 9.2e-06 53.5 79 38.0
Cc07_g07320 Coffea canephora HOM05D001756 ORTHO05D001581 9.2e-06 53.5 83 38.6
Hma1.2p1_0210F.1_g089330 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 9.2e-06 53.5 81 44.4
Medtr5g015140 Medicago truncatula HOM05D001756 ORTHO05D001581 9.2e-06 53.5 80 41.2
PSO017G5266 Papaver somniferum HOM05D001756 ORTHO05D001581 9.2e-06 53.5 81 45.7
Hund13962 Selenicereus undatus HOM05D001756 ORTHO05D001581 9.2e-06 53.5 86 45.3
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 9.2e-06 53.5 83 39.8


User provided reference genes

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