Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08488 Brassica carinata HOM05D003869 ORTHO05D004718 2.5e-80 302.0 143 100.0
BolC4t26932H Brassica oleracea HOM05D003869 ORTHO05D004718 2.1e-79 298.9 142 98.6
C04p53770 Brassica napus HOM05D003869 ORTHO05D004718 1.5e-77 292.7 138 99.3
A04p18510 Brassica napus HOM05D003869 ORTHO05D004718 5.9e-74 280.8 142 93.0
BraA04t17463Z Brassica rapa HOM05D003869 ORTHO05D004718 5.9e-74 280.8 142 93.0
BolC4t26933H Brassica oleracea HOM05D003869 ORTHO05D004718 7.7e-74 280.4 142 93.0
BcaC02g08486 Brassica carinata HOM05D003869 ORTHO05D004718 3.8e-73 278.1 143 91.6
A04p18500 Brassica napus HOM05D003869 ORTHO05D004718 3.2e-72 275.0 142 90.8
A04p18540 Brassica napus HOM05D003869 ORTHO05D004718 3.2e-72 275.0 142 90.8
C04p53780 Brassica napus HOM05D003869 ORTHO05D004718 3.2e-72 275.0 142 92.3
BraA04t17462Z Brassica rapa HOM05D003869 ORTHO05D004718 3.2e-72 275.0 142 90.8
BcaC02g08487 Brassica carinata HOM05D003869 ORTHO05D004718 3.6e-63 245.0 143 83.2
BcaC02g08489 Brassica carinata HOM05D003869 ORTHO05D004718 2.3e-54 215.7 144 71.5
C04p53760 Brassica napus HOM05D003869 ORTHO05D004718 2.3e-54 215.7 144 71.5
BolC4t26931H Brassica oleracea HOM05D003869 ORTHO05D004718 2.3e-54 215.7 144 71.5
AL4G18540 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.2e-53 213.4 144 71.5
Sp4g03230 Schrenkiella parvula HOM05D003869 ORTHO05D004718 3.3e-53 211.8 141 71.6
AL4G14520 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 8.2e-52 207.2 140 67.9
AL4G18550 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 8.2e-52 207.2 142 71.8
Carub.0004s0426 Capsella rubella HOM05D003869 ORTHO05D004718 2.4e-51 205.7 141 72.3
CARHR117020 Cardamine hirsuta HOM05D003869 ORTHO05D004718 4.1e-51 204.9 144 66.0
AL4G15500 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 7.0e-51 204.1 144 70.8
AL4G15555 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 7.0e-51 204.1 141 71.6
AL4G15660 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 7.0e-51 204.1 141 71.6
AL4G18480 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.2e-50 203.4 141 68.8
AL4G18560 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.0e-50 202.6 141 68.1
Thhalv10000460m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 4.5e-50 201.4 142 67.6
BcaB06g27998 Brassica carinata HOM05D003869 ORTHO05D004718 7.7e-50 200.7 141 66.7
Carub.0004s0353 Capsella rubella HOM05D003869 ORTHO05D004718 7.7e-50 200.7 142 69.7
AL4G14510 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.3e-49 199.9 141 67.4
A04p19090 Brassica napus HOM05D003869 ORTHO05D004718 1.3e-49 199.9 141 66.7
Thhalv10000198m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.7e-49 199.5 142 65.5
CARHR117220 Cardamine hirsuta HOM05D003869 ORTHO05D004718 3.8e-49 198.4 143 67.1
Thhalv10000166m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 3.8e-49 198.4 142 66.9
Thhalv10000675m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 3.8e-49 198.4 144 66.0
BraA04t17507Z Brassica rapa HOM05D003869 ORTHO05D004718 8.5e-49 197.2 141 66.0
AL4G18510 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.1e-48 196.8 142 67.6
Sp4g03220 Schrenkiella parvula HOM05D003869 ORTHO05D004718 1.9e-48 196.1 141 68.1
Carub.0004s0420 Capsella rubella HOM05D003869 ORTHO05D004718 1.2e-47 193.4 141 63.8
CARHR116870 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.7e-47 192.2 141 66.0
AL4G15620 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 3.6e-47 191.8 144 66.0
AT1G64840 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 1.4e-46 189.9 139 64.7
AT2G24250 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 1.8e-46 189.5 145 66.2
Carub.0004s0423 Capsella rubella HOM05D003869 ORTHO05D004718 4.0e-46 188.3 146 63.0
Carub.0004s0433 Capsella rubella HOM05D003869 ORTHO05D004718 6.8e-46 187.6 141 63.8
Thhalv10000199m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.2e-45 186.8 140 62.9
Carub.0004s0422 Capsella rubella HOM05D003869 ORTHO05D004718 3.4e-45 185.3 141 62.4
Carub.0004s0432 Capsella rubella HOM05D003869 ORTHO05D004718 3.4e-45 185.3 144 61.8
AL4G14530 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.3e-44 183.3 141 66.0
BcaB06g28002 Brassica carinata HOM05D003869 ORTHO05D004718 8.3e-44 180.6 141 64.5
BcaB06g28001 Brassica carinata HOM05D003869 ORTHO05D004718 1.1e-43 180.3 141 61.7
Carub.0004s0427 Capsella rubella HOM05D003869 ORTHO05D004718 1.1e-43 180.3 146 59.6
CARHR117030 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.1e-43 180.3 140 61.4
AL4G18570 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.8e-43 179.5 144 63.2
Thhalv10000613m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 5.4e-43 177.9 141 60.3
C04p54430 Brassica napus HOM05D003869 ORTHO05D004718 7.0e-43 177.6 142 64.1
A04p19130 Brassica napus HOM05D003869 ORTHO05D004718 9.1e-43 177.2 143 62.9
CARHR118620 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.0e-42 176.0 141 58.9
BcaB06g28007 Brassica carinata HOM05D003869 ORTHO05D004718 4.5e-42 174.9 144 59.7
A04p19140 Brassica napus HOM05D003869 ORTHO05D004718 1.0e-41 173.7 143 62.9
Sp4g03710 Schrenkiella parvula HOM05D003869 ORTHO05D004718 1.0e-41 173.7 143 58.0
BraA04t17514Z Brassica rapa HOM05D003869 ORTHO05D004718 1.3e-41 173.3 143 62.9
CARHR116990 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.7e-41 172.9 144 61.1
A04p19110 Brassica napus HOM05D003869 ORTHO05D004718 3.8e-41 171.8 139 66.2
BraA04t17509Z Brassica rapa HOM05D003869 ORTHO05D004718 3.8e-41 171.8 139 66.2
C04p54480 Brassica napus HOM05D003869 ORTHO05D004718 5.0e-41 171.4 143 62.2
Carub.0004s0429 Capsella rubella HOM05D003869 ORTHO05D004718 5.0e-41 171.4 139 60.4
C04p54520 Brassica napus HOM05D003869 ORTHO05D004718 1.5e-40 169.9 143 60.8
BcaB06g28005 Brassica carinata HOM05D003869 ORTHO05D004718 1.9e-40 169.5 141 63.1
Carub.0004s0357 Capsella rubella HOM05D003869 ORTHO05D004718 1.9e-40 169.5 142 64.8
C04p54490 Brassica napus HOM05D003869 ORTHO05D004718 3.3e-40 168.7 139 64.7
BolC4t26993H Brassica oleracea HOM05D003869 ORTHO05D004718 7.2e-40 167.5 139 64.0
Carub.0004s0430 Capsella rubella HOM05D003869 ORTHO05D004718 9.5e-40 167.2 145 59.3
CARHR117230 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.2e-39 166.8 145 58.6
BcaB06g28006 Brassica carinata HOM05D003869 ORTHO05D004718 1.6e-39 166.4 141 62.4
BcaC02g08418 Brassica carinata HOM05D003869 ORTHO05D004718 1.6e-39 166.4 139 64.0
BcaB01g02713 Brassica carinata HOM05D003869 ORTHO05D004718 2.1e-39 166.0 143 58.0
Carub.0004s0354 Capsella rubella HOM05D003869 ORTHO05D004718 2.1e-39 166.0 142 58.5
BcaC02g08414 Brassica carinata HOM05D003869 ORTHO05D004718 2.8e-39 165.6 143 60.1
BolC4t26995H Brassica oleracea HOM05D003869 ORTHO05D004718 2.8e-39 165.6 143 60.1
BcaB01g02998 Brassica carinata HOM05D003869 ORTHO05D004718 1.8e-38 162.9 144 55.6
A04p19120 Brassica napus HOM05D003869 ORTHO05D004718 1.8e-38 162.9 143 60.1
Thhalv10000175m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 4.4e-37 158.3 139 56.1
Thhalv10019678m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.3e-36 156.8 150 55.3
C03p32370 Brassica napus HOM05D003869 ORTHO05D004718 5.4e-35 151.4 141 53.2
CARHR117880 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.6e-34 149.8 120 61.7
BcaC02g08416 Brassica carinata HOM05D003869 ORTHO05D004718 4.5e-34 148.3 125 63.2
Carub.0004s0424 Capsella rubella HOM05D003869 ORTHO05D004718 5.9e-34 147.9 143 53.8
A03p26980 Brassica napus HOM05D003869 ORTHO05D004718 7.8e-34 147.5 141 51.8
Thhalv10000192m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.0e-33 147.1 160 49.4
A06p40890 Brassica napus HOM05D003869 ORTHO05D004718 1.7e-33 146.4 141 54.6
BraA03t11909Z Brassica rapa HOM05D003869 ORTHO05D004718 1.7e-33 146.4 141 52.5
BraA06t27011Z Brassica rapa HOM05D003869 ORTHO05D004718 1.7e-33 146.4 141 54.6
BcaC06g33784 Brassica carinata HOM05D003869 ORTHO05D004718 2.9e-33 145.6 141 54.6
C07p36960 Brassica napus HOM05D003869 ORTHO05D004718 2.9e-33 145.6 141 54.6
BolC7t44209H Brassica oleracea HOM05D003869 ORTHO05D004718 2.9e-33 145.6 141 54.6
A04p19070 Brassica napus HOM05D003869 ORTHO05D004718 8.0e-31 137.5 139 51.8
BraA04t17506Z Brassica rapa HOM05D003869 ORTHO05D004718 1.8e-30 136.3 139 51.8
CARHR116880 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.3e-30 136.0 140 52.1
CARHR116720 Cardamine hirsuta HOM05D003869 ORTHO05D004718 5.8e-29 131.3 86 74.4
BcaC02g08422 Brassica carinata HOM05D003869 ORTHO05D004718 8.3e-28 127.5 142 47.9
C04p54410 Brassica napus HOM05D003869 ORTHO05D004718 8.3e-28 127.5 142 47.9
BolC4t26987H Brassica oleracea HOM05D003869 ORTHO05D004718 3.2e-27 125.6 142 47.9
BcaC02g08420 Brassica carinata HOM05D003869 ORTHO05D004718 3.5e-26 122.1 141 48.9
CARHR117860 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.0e-25 120.6 92 62.0
A04p18490 Brassica napus HOM05D003869 ORTHO05D004718 2.5e-24 115.9 141 46.1
C04p54420 Brassica napus HOM05D003869 ORTHO05D004718 8.0e-23 110.9 75 69.3
CARHR116970 Cardamine hirsuta HOM05D003869 ORTHO05D004718 8.0e-23 110.9 105 57.1
CARHR116710 Cardamine hirsuta HOM05D003869 ORTHO05D004718 4.9e-20 101.7 72 70.8
BraA04t17461Z Brassica rapa HOM05D003869 ORTHO05D004718 3.0e-17 92.4 92 52.2
CARHR116940 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.1e-16 90.5 144 39.6
BraA04t17512Z Brassica rapa HOM05D003869 ORTHO05D004718 1.9e-16 89.7 80 56.2
BcaB07g31773 Brassica carinata HOM05D003869 ORTHO05D004718 7.3e-16 87.8 145 37.2
AL4G14540 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.2e-15 87.0 107 47.7
BcaC02g08419 Brassica carinata HOM05D003869 ORTHO05D004718 2.8e-15 85.9 63 68.3
BolC4t26992H Brassica oleracea HOM05D003869 ORTHO05D004718 2.8e-15 85.9 63 68.3
BcaC04g23026 Brassica carinata HOM05D003869 ORTHO05D004718 1.1e-14 84.0 152 36.2
C09p12930 Brassica napus HOM05D003869 ORTHO05D004718 1.1e-14 84.0 152 36.2
BolC9t54184H Brassica oleracea HOM05D003869 ORTHO05D004718 1.1e-14 84.0 152 36.2
C09p12940 Brassica napus HOM05D003869 ORTHO05D004718 4.0e-14 82.0 149 35.6
BolC9t54185H Brassica oleracea HOM05D003869 ORTHO05D004718 4.0e-14 82.0 149 35.6
Sp3g29510 Schrenkiella parvula HOM05D003869 ORTHO05D004718 4.0e-14 82.0 145 35.2
A09p10960 Brassica napus HOM05D003869 ORTHO05D004718 5.2e-14 81.6 152 37.5
BraA09t36735Z Brassica rapa HOM05D003869 ORTHO05D004718 5.2e-14 81.6 152 37.5
CARHR053970 Cardamine hirsuta HOM05D003869 ORTHO05D004718 5.2e-14 81.6 145 36.6
C09p12950 Brassica napus HOM05D003869 ORTHO05D004718 3.4e-13 79.0 144 37.5
BolC9t54186H Brassica oleracea HOM05D003869 ORTHO05D004718 3.4e-13 79.0 144 37.5
BcaC04g23024 Brassica carinata HOM05D003869 ORTHO05D004718 7.5e-13 77.8 140 35.7
A09p10950 Brassica napus HOM05D003869 ORTHO05D004718 1.3e-12 77.0 149 34.2
BcaC04g23023 Brassica carinata HOM05D003869 ORTHO05D004718 3.7e-12 75.5 143 37.1
AL3G52380 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.4e-11 72.8 146 32.9
C09p12960 Brassica napus HOM05D003869 ORTHO05D032479 3.2e-11 72.4 145 32.4
BolC9t54188H Brassica oleracea HOM05D003869 ORTHO05D032479 3.2e-11 72.4 145 32.4
Thecc.02G052700 Theobroma cacao HOM05D000151 ORTHO05D000074 5.4e-11 71.6 141 30.5
Sp3g29520 Schrenkiella parvula HOM05D003869 ORTHO05D004718 1.2e-10 70.5 145 31.7
BolC4t26989H Brassica oleracea HOM05D003869 ORTHO05D004718 3.5e-10 68.9 51 56.9
AL4G15530 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.7e-09 66.6 38 78.9
AT2G16290 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 5.1e-09 65.1 155 29.7
Gohir.A01G171700 Gossypium hirsutum HOM05D000151 ORTHO05D000074 6.6e-09 64.7 139 29.5
arahy.Tifrunner.gnm1.ann1.2FAG51 Arachis hypogaea HOM05D000151 ORTHO05D000074 1.1e-08 63.9 139 31.7
CARHR053960 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.1e-08 63.9 151 35.1
Duzib052G1153 Durio zibethinus HOM05D000151 ORTHO05D000074 1.5e-08 63.5 141 28.4
Gorai.002G201700 Gossypium raimondii HOM05D000151 ORTHO05D000074 1.5e-08 63.5 139 28.8
Thecc.02G052600 Theobroma cacao HOM05D000151 ORTHO05D000074 1.5e-08 63.5 151 30.5
Duzib132G0179 Durio zibethinus HOM05D000151 ORTHO05D000074 1.9e-08 63.2 144 29.2
COL.COLO4_18005 Corchorus olitorius HOM05D000151 ORTHO05D000074 2.5e-08 62.8 144 27.8
AL3G49820 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 3.3e-08 62.4 151 30.5
BcaB08g34687 Brassica carinata HOM05D000151 ORTHO05D000074 3.3e-08 62.4 151 27.8
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 3.3e-08 62.4 151 31.8
CARHR106540 Cardamine hirsuta HOM05D003869 ORTHO05D004718 3.3e-08 62.4 143 32.2
Thhalv10023062m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 3.3e-08 62.4 110 38.2
AL4G18500 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 4.3e-08 62.0 37 73.0
Eucgr.I01470 Eucalyptus grandis HOM05D000151 ORTHO05D000074 4.3e-08 62.0 139 27.3
Carub.0003s3002 Capsella rubella HOM05D003869 ORTHO05D004718 5.6e-08 61.6 153 32.7
Gohir.D04G169200 Gossypium hirsutum HOM05D000151 ORTHO05D000074 5.6e-08 61.6 142 28.9
Gohir.D04G169400 Gossypium hirsutum HOM05D000151 ORTHO05D000074 5.6e-08 61.6 142 28.9
Gorai.012G157500 Gossypium raimondii HOM05D000151 ORTHO05D000074 7.3e-08 61.2 142 28.9
AT2G16300 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 1.2e-07 60.5 151 30.5
AT2G17030 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 1.2e-07 60.5 147 28.6
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 1.2e-07 60.5 151 27.2
Carub.0003s3003 Capsella rubella HOM05D003869 ORTHO05D004718 1.2e-07 60.5 154 32.5
Aa31LG8G14220 Aethionema arabicum HOM05D000151 ORTHO05D000074 2.1e-07 59.7 149 28.9
Haze_02069 Corylus avellana HOM05D000151 ORTHO05D000074 2.1e-07 59.7 140 28.6
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 2.8e-07 59.3 151 27.2
Lalb_Chr25g0283041 Lupinus albus HOM05D000151 ORTHO05D000074 2.8e-07 59.3 154 33.1
Carub.0131s0002 Capsella rubella HOM05D003869 ORTHO05D004718 3.6e-07 58.9 154 33.1
COL.COLO4_18004 Corchorus olitorius HOM05D000151 ORTHO05D000074 3.6e-07 58.9 144 29.9
Duzib132G0877 Durio zibethinus HOM05D000151 ORTHO05D000074 3.6e-07 58.9 147 31.3
Carub.0131s0001 Capsella rubella HOM05D003869 ORTHO05D004718 4.7e-07 58.5 146 30.8
Eucgr.I01472 Eucalyptus grandis HOM05D000151 ORTHO05D000074 4.7e-07 58.5 139 25.9
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 6.2e-07 58.2 148 28.4
CiPaw.05G087200 Carya illinoinensis HOM05D000151 ORTHO05D000074 6.2e-07 58.2 145 31.7
FAN15G2361 Fragaria x ananassa HOM05D000151 ORTHO05D000074 8.1e-07 57.8 142 31.0
Manes.04G069000 Manihot esculenta HOM05D000151 ORTHO05D000074 1.1e-06 57.4 148 29.7
Rhsim11G0195100 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.1e-06 57.4 153 27.5
BcaC02g08421 Brassica carinata HOM05D003869 ORTHO05D004718 1.4e-06 57.0 38 65.8
BolC4t26990H Brassica oleracea HOM05D003869 ORTHO05D004718 1.4e-06 57.0 38 65.8
Carub.0003s3004 Capsella rubella HOM05D003869 ORTHO05D004718 1.4e-06 57.0 146 30.1
Medtr3g058460 Medicago truncatula HOM05D000151 ORTHO05D000074 1.4e-06 57.0 142 31.7
CARHR116910 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.8e-06 56.6 53 58.5
FAN20G3023 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.4e-06 56.2 140 30.7
Sp3g29530 Schrenkiella parvula HOM05D006837 ORTHO05D009407 3.1e-06 55.8 84 41.7
Ca_14445_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 4.0e-06 55.5 154 31.2
HanXRQChr15g0477851 Helianthus annuus HOM05D000151 ORTHO05D000074 4.0e-06 55.5 139 30.2
Gohir.D02G227900 Gossypium hirsutum HOM05D000151 ORTHO05D000074 5.2e-06 55.1 143 30.1
Medtr6g018360 Medicago truncatula HOM05D000151 ORTHO05D000074 5.2e-06 55.1 85 34.1
Eucgr.I01474 Eucalyptus grandis HOM05D000151 ORTHO05D000074 6.8e-06 54.7 140 27.1
PGSC0003DMG400018632 Solanum tuberosum HOM05D000151 ORTHO05D000074 6.8e-06 54.7 144 27.1
Sp3g30320 Schrenkiella parvula HOM05D000151 ORTHO05D000074 8.9e-06 54.3 152 27.6


User provided reference genes

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