Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08464 Brassica carinata HOM05D007770 ORTHO05D009827 8.4e-67 256.9 132 100.0
A04p18710 Brassica napus HOM05D007770 ORTHO05D009827 1.4e-50 203.0 135 85.2
BraA04t17481Z Brassica rapa HOM05D007770 ORTHO05D009827 7.1e-50 200.7 135 84.4
BolC4t26952H Brassica oleracea HOM05D007770 ORTHO05D009827 2.7e-49 198.7 136 83.1
Sp4g03420 Schrenkiella parvula HOM05D007770 ORTHO05D009827 1.3e-46 189.9 135 69.6
Thhalv10000372m.g Eutrema salsugineum HOM05D007770 ORTHO05D009827 2.1e-46 189.1 135 71.9
AT2G24395 Arabidopsis thaliana HOM05D007770 ORTHO05D009827 3.7e-46 188.3 135 69.6
C04p54000 Brassica napus HOM05D007770 ORTHO05D009827 6.2e-46 187.6 136 80.1
Aa31sc132G30 Aethionema arabicum HOM05D007770 ORTHO05D009827 3.1e-45 185.3 138 65.9
AL4G14830 Arabidopsis lyrata HOM05D007770 ORTHO05D009827 4.0e-45 184.9 135 68.9
Carub.0004s0375 Capsella rubella HOM05D007770 ORTHO05D009827 1.7e-43 179.5 136 67.6
CARHR117660 Cardamine hirsuta HOM05D007770 ORTHO05D009827 5.5e-42 174.5 135 63.0
Gohir.D06G109700 Gossypium hirsutum HOM05D007770 ORTHO05D009827 2.6e-28 129.0 136 60.3
Gorai.010G124500 Gossypium raimondii HOM05D007770 ORTHO05D009827 4.5e-28 128.3 136 60.3
Thecc.09G003100 Theobroma cacao HOM05D007770 ORTHO05D009827 1.3e-27 126.7 139 58.3
Duzib150G1352 Durio zibethinus HOM05D007770 ORTHO05D009827 3.8e-27 125.2 134 50.0
Manes.16G137500 Manihot esculenta HOM05D007770 ORTHO05D009827 4.2e-26 121.7 134 51.5
arahy.Tifrunner.gnm1.ann1.SE3NL1 Arachis hypogaea HOM05D007770 ORTHO05D009827 7.2e-26 120.9 129 60.5
GSVIVG01035563001 Vitis vinifera HOM05D007770 ORTHO05D009827 7.2e-26 120.9 118 65.3
Dinv13246 Davidia involucrata HOM05D007770 ORTHO05D009827 2.7e-25 119.0 99 60.6
arahy.Tifrunner.gnm1.ann1.DWH8JW Arachis hypogaea HOM05D007770 ORTHO05D009827 3.6e-25 118.6 128 58.6
FvH4_2g36440 Fragaria vesca HOM05D007770 ORTHO05D009827 7.9e-25 117.5 132 47.0
FAN20G1378 Fragaria x ananassa HOM05D007770 ORTHO05D009827 7.9e-25 117.5 132 56.1
QL12p025908 Quercus lobata HOM05D007770 ORTHO05D009827 1.4e-24 116.7 122 49.2
FAN27G1234 Fragaria x ananassa HOM05D007770 ORTHO05D009827 1.8e-24 116.3 132 47.0
MD08G1124100 Malus domestica HOM05D007770 ORTHO05D009827 1.8e-24 116.3 96 56.2
Nitab4.5_0001942g0170 Nicotiana tabacum HOM05D007770 ORTHO05D009827 3.0e-24 115.5 99 69.7
Ciclev10010266m.g Citrus clementina HOM05D007770 ORTHO05D009827 3.9e-24 115.2 113 53.1
Sabra06G0215900 Salix brachista HOM05D007770 ORTHO05D009827 8.8e-24 114.0 122 61.5
Potri.006G278250 Populus trichocarpa HOM05D007770 ORTHO05D009827 1.5e-23 113.2 119 59.7
CAN.G480.16 Capsicum annuum HOM05D007770 ORTHO05D009827 2.0e-23 112.8 95 72.6
PGSC0003DMG400029583 Solanum tuberosum HOM05D007770 ORTHO05D009827 2.0e-23 112.8 99 68.7
Lj1g0002810 Lotus japonicus HOM05D007770 ORTHO05D009827 2.6e-23 112.5 98 57.1
Prupe.1G455800 Prunus persica HOM05D007770 ORTHO05D009827 2.6e-23 112.5 99 65.7
TAR625G0611 Trochodendron aralioides HOM05D007770 ORTHO05D009827 4.4e-23 111.7 91 57.1
Atru.chr7.2683 Acer truncatum HOM05D007770 ORTHO05D009827 9.7e-23 110.5 122 49.2
MSTRG.13938 Avicennia marina HOM05D007770 ORTHO05D009827 1.7e-22 109.8 99 52.5
Sopen08g022850 Solanum pennellii HOM05D007770 ORTHO05D009827 1.7e-22 109.8 94 70.2
Solyc08g069230.3 Solanum lycopersicum HOM05D007770 ORTHO05D009827 2.2e-22 109.4 94 69.1
Nn8g41062 Nelumbo nucifera HOM05D007770 ORTHO05D009827 6.3e-22 107.8 104 52.9
CiPaw.08G021600 Carya illinoinensis HOM05D007770 ORTHO05D009827 1.4e-21 106.7 94 54.3
Eucgr.C04242 Eucalyptus grandis HOM05D007770 ORTHO05D009827 1.4e-21 106.7 91 54.9
Phvul.009G103700 Phaseolus vulgaris HOM05D007770 ORTHO05D009827 1.4e-21 106.7 90 53.3
VMungo1309G0540 Vigna mungo HOM05D007770 ORTHO05D009827 3.1e-21 105.5 69 63.8
CANSAT56G0680 Cannabis sativa HOM05D007770 ORTHO05D009827 4.1e-21 105.1 72 62.5
Lsat_1_v5_gn_3_26540 Lactuca sativa HOM05D007770 ORTHO05D009827 4.1e-21 105.1 90 54.4
TWI34G0832 Tripterygium wilfordii HOM05D007770 ORTHO05D009827 4.1e-21 105.1 95 57.9
EL10Ac2g03698 Beta vulgaris HOM05D007770 ORTHO05D009827 1.2e-20 103.6 74 73.0
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 1.2e-20 103.6 72 69.4
CDE02G4318 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 1.5e-20 103.2 86 70.9
DCAR_000666 Daucus carota HOM05D007770 ORTHO05D009827 1.5e-20 103.2 122 57.4
PSO063G4434 Papaver somniferum HOM05D007770 ORTHO05D009827 1.5e-20 103.2 96 50.0
Cc08_g05750 Coffea canephora HOM05D007770 ORTHO05D009827 3.4e-20 102.1 74 58.1
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 4.5e-20 101.7 72 61.1
CDE06G0935 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 5.9e-20 101.3 100 63.0
Migut.E01418 Erythranthe guttata HOM05D007770 ORTHO05D009827 7.7e-20 100.9 93 48.4
Aqoxy7G02675 Aquilegia oxysepala HOM05D007770 ORTHO05D009827 2.2e-19 99.4 116 44.8
ECA246G2424 Erigeron canadensis HOM05D007770 ORTHO05D009827 6.5e-19 97.8 110 47.3
Psat5g024680 Pisum sativum HOM05D007770 ORTHO05D009827 8.5e-19 97.4 69 59.4
RcHm_v2.0_Chr6g0305461 Rosa chinensis HOM05D007770 ORTHO05D009827 8.5e-19 97.4 92 65.2
Gohir.A06G107400 Gossypium hirsutum HOM05D007770 ORTHO05D009827 2.5e-18 95.9 67 65.7
HanXRQChr17g0539271 Helianthus annuus HOM05D007770 ORTHO05D009827 3.2e-18 95.5 90 57.8
Medtr3g109170 Medicago truncatula HOM05D007770 ORTHO05D009827 7.2e-18 94.4 66 60.6
arahy.Tifrunner.gnm1.ann1.T2QDAL Arachis hypogaea HOM05D007770 ORTHO05D009827 9.4e-18 94.0 100 51.0
SalBow8G5425 Salvia bowleyana HOM05D007770 ORTHO05D009827 9.4e-18 94.0 100 57.0
Glyma.04G077900 Glycine max HOM05D007770 ORTHO05D009827 1.2e-17 93.6 68 61.8
TPR.G12312 Trifolium pratense HOM05D007770 ORTHO05D009827 1.2e-17 93.6 67 56.7
Pp3c27_7640 Physcomitrium patens HOM05D007770 ORTHO05D009827 1.0e-16 90.5 134 40.3
CANSAT56G1809 Cannabis sativa HOM05D007770 ORTHO05D009827 3.9e-16 88.6 67 62.7
FAN15G1940 Fragaria x ananassa HOM05D007770 ORTHO05D009827 3.9e-16 88.6 101 45.5
HPP92_017098 Vanilla planifolia HOM05D007770 ORTHO05D009827 1.1e-15 87.0 92 45.7
Nitab4.5_0000970g0130 Nicotiana tabacum HOM05D007770 ORTHO05D009827 3.3e-15 85.5 67 59.7
Lalb_Chr23g0269281 Lupinus albus HOM05D007770 ORTHO05D009827 2.2e-14 82.8 125 49.6
Sed0000657 Sechium edule HOM05D007770 ORTHO05D009827 3.7e-14 82.0 67 55.2
MELO3C011169.2 Cucumis melo HOM05D007770 ORTHO05D009827 6.3e-14 81.3 67 52.2
ClCG08G012500 Citrullus lanatus HOM05D007770 ORTHO05D009827 5.3e-13 78.2 66 51.5
CsaV3_2G031200 Cucumis sativus L. HOM05D007770 ORTHO05D009827 5.3e-13 78.2 67 52.2
MD15G1102800 Malus domestica HOM05D007770 ORTHO05D009827 1.3e-11 73.6 114 37.7
Os08g0520850 Oryza sativa ssp. japonica HOM05D007770 ORTHO05D009827 1.7e-11 73.2 41 70.7
CBR_g3948 Chara braunii HOM05D007770 ORTHO05D009827 2.2e-11 72.8 68 45.6
Mapoly0035s0047 Marchantia polymorpha HOM05D007770 ORTHO05D009827 6.5e-11 71.2 69 43.5
unitig_747.g21378 Utricularia gibba HOM05D007770 ORTHO05D009827 2.5e-10 69.3 75 41.3
HPP92_017108 Vanilla planifolia HOM05D007770 ORTHO05D009827 3.2e-10 68.9 65 49.2
AagrBONN_evm.TU.Sc2ySwM_228.4990 Anthoceros agrestis HOM05D007770 ORTHO05D009827 1.2e-09 67.0 72 40.3
Zm00001eb035580 Zea mays HOM05D007770 ORTHO05D009827 2.7e-09 65.9 62 50.0
Glyma.06G079000 Glycine max HOM05D007770 ORTHO05D009827 1.8e-08 63.2 33 72.7
Actinidia25745 Actinidia chinensis HOM05D007770 ORTHO05D009827 2.3e-08 62.8 52 53.8
MD08G1226400 Malus domestica HOM05D007770 ORTHO05D009827 2.8e-06 55.8 28 78.6


User provided reference genes

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