Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 2.9e-63 245.0 115 100.0
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 6.6e-44 180.6 115 80.0
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 4.8e-42 174.5 118 78.0
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 9.3e-22 107.1 57 82.5
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 9.3e-22 107.1 57 82.5
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 3.5e-21 105.1 52 88.5
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 3.5e-21 105.1 52 88.5
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 4.6e-21 104.8 64 76.6
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 1.8e-20 102.8 64 75.0
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 2.3e-20 102.4 57 80.7
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 1.2e-16 90.1 52 73.1
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.0e-16 89.4 51 78.4
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 3.4e-16 88.6 46 84.8
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 4.5e-16 88.2 61 67.2
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 5.9e-16 87.8 45 86.7
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 2.9e-15 85.5 59 66.1
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 3.8e-15 85.1 52 71.2
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 8.5e-15 84.0 65 61.5
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 2.5e-14 82.4 45 73.3
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 4.2e-14 81.6 50 68.0
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 5.5e-14 81.3 44 77.3
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 5.5e-14 81.3 44 77.3
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 5.5e-14 81.3 51 72.5
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.2e-13 80.1 52 61.5
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.2e-13 80.1 52 61.5
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 4.6e-13 78.2 63 55.6
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 7.9e-13 77.4 49 67.3
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 7.9e-13 77.4 49 67.3
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 1.8e-12 76.3 51 62.7
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 1.8e-12 76.3 45 64.4
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 2.3e-12 75.9 43 69.8
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 5.1e-12 74.7 43 67.4
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 6.7e-12 74.3 41 73.2
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 8.8e-12 73.9 41 70.7
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.5e-11 73.2 41 68.3
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.0e-11 72.8 41 68.3
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 2.5e-11 72.4 51 62.7
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 3.3e-11 72.0 43 65.1
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 5.7e-11 71.2 48 60.4
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 5.7e-11 71.2 51 60.8
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 7.4e-11 70.9 42 64.3
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 1.3e-10 70.1 45 60.0
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 1.3e-10 70.1 41 65.9
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 1.3e-10 70.1 40 67.5
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.3e-10 70.1 48 62.5
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 1.7e-10 69.7 41 65.9
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 2.2e-10 69.3 43 62.8
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 3.7e-10 68.6 51 58.8
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 4.8e-10 68.2 49 63.3
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 4.8e-10 68.2 56 58.9
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 4.8e-10 68.2 44 56.8
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 4.8e-10 68.2 42 61.9
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 4.8e-10 68.2 42 61.9
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 6.3e-10 67.8 44 61.4
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 8.2e-10 67.4 52 55.8
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 8.2e-10 67.4 40 65.0
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 8.2e-10 67.4 42 59.5
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 8.2e-10 67.4 50 54.0
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 8.2e-10 67.4 65 49.2
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 8.2e-10 67.4 49 61.2
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 8.2e-10 67.4 52 53.8
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.1e-09 67.0 52 57.7
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.1e-09 67.0 52 57.7
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 1.4e-09 66.6 50 58.0
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.4e-09 66.6 50 58.0
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.4e-09 66.6 67 52.2
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 1.8e-09 66.2 47 55.3
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 2.4e-09 65.9 49 59.2
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 2.4e-09 65.9 56 51.8
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 2.4e-09 65.9 42 59.5
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 2.4e-09 65.9 42 59.5
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 2.4e-09 65.9 42 59.5
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 3.1e-09 65.5 55 52.7
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 4.1e-09 65.1 57 50.9
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 5.3e-09 64.7 40 60.0
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 6.9e-09 64.3 51 51.0
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 6.9e-09 64.3 55 52.7
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 6.9e-09 64.3 57 50.9
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 9.1e-09 63.9 38 68.4
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 9.1e-09 63.9 38 63.2
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 1.2e-08 63.5 41 58.5
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.2e-08 63.5 49 53.1
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.5e-08 63.2 51 49.0
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 1.5e-08 63.2 41 56.1
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.5e-08 63.2 50 52.0
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 1.5e-08 63.2 59 50.8
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 1.5e-08 63.2 47 51.1
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 1.5e-08 63.2 40 60.0
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.0e-08 62.8 44 54.5
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 2.0e-08 62.8 45 53.3
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 2.0e-08 62.8 67 43.3
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 3.4e-08 62.0 39 59.0
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 4.5e-08 61.6 40 57.5
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 4.5e-08 61.6 44 59.1
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 5.9e-08 61.2 48 54.2
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 5.9e-08 61.2 111 33.3
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 5.9e-08 61.2 48 50.0
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 5.9e-08 61.2 48 47.9
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 7.7e-08 60.8 40 55.0
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 1.0e-07 60.5 33 60.6
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 1.0e-07 60.5 40 57.5
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.0e-07 60.5 50 50.0
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.3e-07 60.1 37 62.2
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 1.7e-07 59.7 64 46.9
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 2.2e-07 59.3 57 50.9
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 2.9e-07 58.9 39 53.8
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 6.5e-07 57.8 42 50.0
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 6.5e-07 57.8 37 56.8
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 6.5e-07 57.8 40 55.0
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 8.5e-07 57.4 38 55.3
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 4.2e-06 55.1 54 59.3
BcaC06g33891 Brassica carinata HOM05D001130 ORTHO05D023954 4.2e-06 55.1 28 92.9
C07p35830 Brassica napus HOM05D034546 ORTHO05D020084 5.5e-06 54.7 27 92.6
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 7.2e-06 54.3 41 43.9
C03p00090 Brassica napus HOM05D001329 ORTHO05D004946 7.2e-06 54.3 26 100.0


User provided reference genes

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