Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08415 Brassica carinata HOM05D013546 ORTHO05D014955 5.0e-69 264.2 127 100.0
BcaB06g26615 Brassica carinata HOM05D013546 ORTHO05D014955 1.2e-49 199.9 103 94.2
CARHR076510 Cardamine hirsuta HOM05D000189 ORTHO05D006628 4.1e-18 95.1 125 45.6
BNapus_Darmor_BZH_scaffold_99p00030 Brassica napus HOM05D000189 ORTHO05D006628 9.0e-18 94.0 110 48.2
BolC1t05899H Brassica oleracea HOM05D000189 ORTHO05D006628 9.0e-18 94.0 110 48.2
Carub.0003s0162 Capsella rubella HOM05D000189 ORTHO05D006628 9.0e-18 94.0 149 40.9
Sp3g01540 Schrenkiella parvula HOM05D000189 ORTHO05D006628 9.0e-18 94.0 110 48.2
AL3G11870 Arabidopsis lyrata HOM05D000189 ORTHO05D006628 2.6e-17 92.4 110 47.3
CANSAT64G0905 Cannabis sativa HOM05D000189 ORTHO05D006628 5.9e-17 91.3 125 44.0
Potri.004G101800 Populus trichocarpa HOM05D000189 ORTHO05D006628 5.9e-17 91.3 125 44.8
MD17G1074800 Malus domestica HOM05D000189 ORTHO05D006628 7.6e-17 90.9 164 38.4
BcaB08g36882 Brassica carinata HOM05D000189 ORTHO05D006628 1.0e-16 90.5 110 46.4
BcaC09g47706 Brassica carinata HOM05D000189 ORTHO05D006628 1.0e-16 90.5 110 47.3
BNapus_Darmor_BZH_scaffold_122p00020 Brassica napus HOM05D000189 ORTHO05D006628 1.0e-16 90.5 110 47.3
Cpa.g.sc179.18 Carica papaya HOM05D000189 ORTHO05D006628 1.0e-16 90.5 125 44.0
Ciclev10011926m.g Citrus clementina HOM05D000189 ORTHO05D006628 1.0e-16 90.5 125 44.0
Potri.017G113200 Populus trichocarpa HOM05D000189 ORTHO05D006628 1.3e-16 90.1 169 37.3
Atru.chr8.861 Acer truncatum HOM05D000189 ORTHO05D006628 1.7e-16 89.7 166 37.3
Thhalv10013742m.g Eutrema salsugineum HOM05D000189 ORTHO05D006628 1.7e-16 89.7 110 46.4
Sp6g28090 Schrenkiella parvula HOM05D000189 ORTHO05D006628 1.7e-16 89.7 110 46.4
AT5G16040 Arabidopsis thaliana HOM05D000189 ORTHO05D006628 2.9e-16 89.0 110 45.5
MD07G1096100 Malus domestica HOM05D000189 ORTHO05D006628 2.9e-16 89.0 164 37.8
QL02p051539 Quercus lobata HOM05D000189 ORTHO05D006628 2.9e-16 89.0 154 37.7
Thecc.04G136800 Theobroma cacao HOM05D000189 ORTHO05D006628 2.9e-16 89.0 167 37.1
Aa31LG11G13570 Aethionema arabicum HOM05D000189 ORTHO05D006628 3.8e-16 88.6 110 45.5
Sed0006396 Sechium edule HOM05D000189 ORTHO05D006628 3.8e-16 88.6 125 43.2
Aa31LG5G13010 Aethionema arabicum HOM05D000189 ORTHO05D006628 5.0e-16 88.2 101 47.5
PGR042G3999 Punica granatum HOM05D000189 ORTHO05D006628 5.0e-16 88.2 110 45.5
Sed0002805 Sechium edule HOM05D000189 ORTHO05D006628 5.0e-16 88.2 125 43.2
AL6G26920 Arabidopsis lyrata HOM05D000189 ORTHO05D006628 6.5e-16 87.8 101 47.5
Eucgr.J01476 Eucalyptus grandis HOM05D000189 ORTHO05D006628 6.5e-16 87.8 112 45.5
Phvul.004G064300 Phaseolus vulgaris HOM05D000189 ORTHO05D006628 6.5e-16 87.8 167 37.1
Prupe.3G239200 Prunus persica HOM05D000189 ORTHO05D006628 6.5e-16 87.8 164 36.6
Lj2g0014953 Lotus japonicus HOM05D000189 ORTHO05D006628 8.5e-16 87.4 169 36.7
RcHm_v2.0_Chr2g0163071 Rosa chinensis HOM05D000189 ORTHO05D006628 8.5e-16 87.4 166 36.7
THA.LOC104820953 Tarenaya hassleriana HOM05D000189 ORTHO05D006628 8.5e-16 87.4 125 43.2
A10p23010 Brassica napus HOM05D000189 ORTHO05D006628 1.1e-15 87.0 110 45.5
BolC9t58945H Brassica oleracea HOM05D000189 ORTHO05D006628 1.1e-15 87.0 110 45.5
BraA10t44370Z Brassica rapa HOM05D000189 ORTHO05D006628 1.1e-15 87.0 110 45.5
MELO3C022092.2 Cucumis melo HOM05D000189 ORTHO05D006628 1.1e-15 87.0 125 42.4
CsaV3_5G039170 Cucumis sativus L. HOM05D000189 ORTHO05D006628 1.1e-15 87.0 125 42.4
Gohir.A11G162700 Gossypium hirsutum HOM05D000189 ORTHO05D006628 1.1e-15 87.0 167 36.5
Gohir.D11G168900 Gossypium hirsutum HOM05D000189 ORTHO05D006628 1.1e-15 87.0 167 36.5
Gorai.007G180500 Gossypium raimondii HOM05D000189 ORTHO05D006628 1.1e-15 87.0 167 36.5
VMungo0464G0226 Vigna mungo HOM05D000189 ORTHO05D006628 1.9e-15 86.3 125 42.4
Carub.0006s1423 Capsella rubella HOM05D000189 ORTHO05D006628 2.5e-15 85.9 110 44.5
arahy.Tifrunner.gnm1.ann1.H2M9W7 Arachis hypogaea HOM05D000189 ORTHO05D006628 3.2e-15 85.5 125 42.4
CARHR197270 Cardamine hirsuta HOM05D000189 ORTHO05D006628 3.2e-15 85.5 110 44.5
CiPaw.03G060200 Carya illinoinensis HOM05D000189 ORTHO05D006628 3.2e-15 85.5 112 42.9
Glyma.19G046100 Glycine max HOM05D000189 ORTHO05D006628 3.2e-15 85.5 143 38.5
Ca_13738_v3 Cicer arietinum L. HOM05D000189 ORTHO05D006628 5.5e-15 84.7 167 35.3
FvH4_6g45310 Fragaria vesca HOM05D000189 ORTHO05D006628 5.5e-15 84.7 111 43.2
FAN05G4849 Fragaria x ananassa HOM05D000298 ORTHO05D000553 5.5e-15 84.7 111 43.2
Psat1g078920 Pisum sativum HOM05D000189 ORTHO05D006628 5.5e-15 84.7 125 40.8
C01p40840 Brassica napus HOM05D013546 ORTHO05D014955 7.2e-15 84.3 73 57.5
BolC1t03583H Brassica oleracea HOM05D013546 ORTHO05D014955 7.2e-15 84.3 73 57.5
BcaC04g18913 Brassica carinata HOM05D000189 ORTHO05D006628 9.4e-15 84.0 110 44.5
C09p60980 Brassica napus HOM05D000189 ORTHO05D006628 9.4e-15 84.0 110 44.5
FAN14G4610 Fragaria x ananassa HOM05D000298 ORTHO05D006628 1.2e-14 83.6 111 43.2
Lalb_Chr02g0158281 Lupinus albus HOM05D000189 ORTHO05D006628 1.2e-14 83.6 143 37.8
TPR.G32472 Trifolium pratense HOM05D000189 ORTHO05D006628 1.2e-14 83.6 125 40.8
Medtr0024s0070 Medicago truncatula HOM05D000189 ORTHO05D006628 1.6e-14 83.2 125 40.0
arahy.Tifrunner.gnm1.ann1.50M490 Arachis hypogaea HOM05D000189 ORTHO05D006628 2.1e-14 82.8 132 40.2
Sabra04G0078500 Salix brachista HOM05D000189 ORTHO05D006628 2.7e-14 82.4 158 37.3
TWI74G0720 Tripterygium wilfordii HOM05D000189 ORTHO05D006628 2.7e-14 82.4 125 40.0
Cfa007941 Carpinus fangiana HOM05D000189 ORTHO05D006628 3.6e-14 82.0 112 41.1
TWI74G1546 Tripterygium wilfordii HOM05D000189 ORTHO05D006628 1.0e-13 80.5 125 39.2
Dinv34843 Davidia involucrata HOM05D000189 ORTHO05D006628 1.4e-13 80.1 159 36.5
Nn3g17776 Nelumbo nucifera HOM05D000189 ORTHO05D006628 1.8e-13 79.7 124 41.9
Nn4g23772 Nelumbo nucifera HOM05D000189 ORTHO05D006628 1.8e-13 79.7 124 41.9
Sc11g0008230 Simmondsia chinensis HOM05D000189 ORTHO05D006628 1.8e-13 79.7 124 41.1
DCAR_017208 Daucus carota HOM05D000189 ORTHO05D006628 3.0e-13 79.0 124 41.1
Aqoxy3G03932 Aquilegia oxysepala HOM05D000189 ORTHO05D006628 5.1e-13 78.2 124 41.1
AT3G02510 Arabidopsis thaliana HOM05D000189 ORTHO05D006628 6.7e-13 77.8 63 60.3
Hma1.2p1_0136F.1_g062140 Hydrangea macrophylla HOM05D000189 ORTHO05D006628 6.7e-13 77.8 124 40.3
Rhsim10G0063200 Rhododendron simsii HOM05D000189 ORTHO05D006628 6.7e-13 77.8 124 41.9
CAN.G358.140 Capsicum annuum HOM05D000189 ORTHO05D006628 8.8e-13 77.4 124 41.1
Cc07_g08940 Coffea canephora HOM05D000189 ORTHO05D006628 8.8e-13 77.4 124 41.1
Lsat_1_v5_gn_2_79660 Lactuca sativa HOM05D000189 ORTHO05D006628 8.8e-13 77.4 139 38.1
Ah.16g101890 Amaranthus hybridus HOM05D000298 ORTHO05D006628 1.1e-12 77.0 124 39.5
Dinv33930 Davidia involucrata HOM05D000189 ORTHO05D006628 1.1e-12 77.0 124 41.1
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.5e-12 76.6 94 46.8
Lj2A446T44 Lonicera japonica HOM05D000189 ORTHO05D006628 1.5e-12 76.6 124 41.9
Actinidia36311 Actinidia chinensis HOM05D000189 ORTHO05D006628 1.9e-12 76.3 124 40.3
HanXRQChr14g0440981 Helianthus annuus HOM05D000189 ORTHO05D006628 2.5e-12 75.9 100 45.0
Nitab4.5_0002288g0060 Nicotiana tabacum HOM05D000189 ORTHO05D006628 2.5e-12 75.9 124 40.3
Nitab4.5_0004118g0130 Nicotiana tabacum HOM05D000189 ORTHO05D006628 2.5e-12 75.9 124 40.3
HPP92_026956 Vanilla planifolia HOM05D000189 ORTHO05D006628 2.5e-12 75.9 124 40.3
PSO063G6465 Papaver somniferum HOM05D000189 ORTHO05D006628 3.3e-12 75.5 124 41.1
A10p07820 Brassica napus HOM05D013546 ORTHO05D014955 4.3e-12 75.1 75 52.0
BraA03t10225Z Brassica rapa HOM05D013546 ORTHO05D014955 4.3e-12 75.1 75 52.0
Peaxi162Scf01327g00132 Petunia axillaris HOM05D000189 ORTHO05D006628 4.3e-12 75.1 124 39.5
Hund13729 Selenicereus undatus HOM05D000189 ORTHO05D006628 4.3e-12 75.1 124 38.7
TAR371G0089 Trochodendron aralioides HOM05D000189 ORTHO05D006628 4.3e-12 75.1 124 40.3
MSTRG.23563 Avicennia marina HOM05D000189 ORTHO05D006628 5.7e-12 74.7 124 40.3
PSO782G3998 Papaver somniferum HOM05D000189 ORTHO05D006628 5.7e-12 74.7 127 40.2
SGA_v2.0_scaffold33G13475 Striga asiatica HOM05D000189 ORTHO05D006628 5.7e-12 74.7 124 39.5
vmacro05570 Vaccinium macrocarpon HOM05D000189 ORTHO05D006628 5.7e-12 74.7 124 40.3
ECA238G3704 Erigeron canadensis HOM05D000189 ORTHO05D006628 7.4e-12 74.3 100 44.0
GSVIVG01031071001 Vitis vinifera HOM05D000189 ORTHO05D006628 7.4e-12 74.3 124 40.3
CSS0046451 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D006628 9.7e-12 73.9 124 38.7
Oeu030781.1 Olea europaea HOM05D000189 ORTHO05D006628 9.7e-12 73.9 100 44.0
Solyc02g085780.3 Solanum lycopersicum HOM05D000189 ORTHO05D006628 1.3e-11 73.6 124 39.5
Sopen02g030470 Solanum pennellii HOM05D000189 ORTHO05D006628 1.3e-11 73.6 124 39.5
PGSC0003DMG401012656 Solanum tuberosum HOM05D000189 ORTHO05D006628 1.3e-11 73.6 124 39.5
ATR0097G025 Amborella trichopoda HOM05D000189 ORTHO05D006628 1.7e-11 73.2 124 41.1
EL10Ac2g04596 Beta vulgaris HOM05D000189 ORTHO05D006628 1.7e-11 73.2 125 39.2
C07p15310 Brassica napus HOM05D013546 ORTHO05D014955 1.7e-11 73.2 69 55.1
CDE05G3347 Ceratophyllum demersum HOM05D000189 ORTHO05D006628 1.7e-11 73.2 109 39.4
Mapoly0030s0128 Marchantia polymorpha HOM05D000189 ORTHO05D006628 1.7e-11 73.2 124 40.3
CSS0021672 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D006628 2.2e-11 72.8 124 38.7
CDE05G0975 Ceratophyllum demersum HOM05D000298 ORTHO05D006628 3.7e-11 72.0 109 39.4
Haze_14135 Corylus avellana HOM05D000189 ORTHO05D006628 3.7e-11 72.0 74 47.3
COL.COLO4_16185 Corchorus olitorius HOM05D000189 ORTHO05D006628 4.8e-11 71.6 204 30.9
Os08g0430700 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D006628 6.3e-11 71.2 109 41.3
unitig_60.g25410 Utricularia gibba HOM05D000189 ORTHO05D006628 6.3e-11 71.2 100 41.0
C01p36250 Brassica napus HOM05D013546 ORTHO05D014955 8.2e-11 70.9 82 47.6
Medtr0024s0160 Medicago truncatula HOM05D000189 ORTHO05D006628 1.1e-10 70.5 79 44.3
SMO271G0115 Selaginella moellendorffii HOM05D000189 ORTHO05D006628 1.1e-10 70.5 121 38.8
SHI28229 Sapria himalayana HOM05D000189 ORTHO05D006628 2.4e-10 69.3 106 38.7
BolC1t04040H Brassica oleracea HOM05D013546 ORTHO05D014955 3.1e-10 68.9 78 48.7
AUR62008975 Chenopodium quinoa HOM05D000189 ORTHO05D006628 3.1e-10 68.9 105 40.0
AUR62014530 Chenopodium quinoa HOM05D000189 ORTHO05D006628 3.1e-10 68.9 105 40.0
SalBow3G2679 Salvia bowleyana HOM05D000189 ORTHO05D006628 5.3e-10 68.2 124 38.7
Zm00001eb179510 Zea mays HOM05D000189 ORTHO05D006628 5.3e-10 68.2 100 42.0
CBR_g30780 Chara braunii HOM05D000189 ORTHO05D006628 1.7e-08 63.2 124 35.5
RcHm_v2.0_Chr3g0455021 Rosa chinensis HOM05D005595 ORTHO05D006628 1.7e-08 63.2 64 48.4
MD09G1085900 Malus domestica HOM05D000189 ORTHO05D006628 2.2e-08 62.8 175 31.4
Hund16133 Selenicereus undatus HOM05D000189 ORTHO05D006628 5.0e-08 61.6 91 41.8
AagrBONN_evm.TU.Sc2ySwM_228.1882 Anthoceros agrestis HOM05D003842 ORTHO05D004436 6.5e-08 61.2 94 41.5
Migut.H00204 Erythranthe guttata HOM05D000189 ORTHO05D006628 9.4e-07 57.4 98 40.8
Hund16131 Selenicereus undatus HOM05D000189 ORTHO05D006628 9.4e-07 57.4 81 44.4
Rhsim10G0062700 Rhododendron simsii HOM05D000189 ORTHO05D006628 1.2e-06 57.0 130 32.3


User provided reference genes

Program Settings