Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08395 Brassica carinata HOM05D007253 ORTHO05D009055 2.9e-68 261.9 149 100.0
C04p54740 Brassica napus HOM05D007253 ORTHO05D009055 2.9e-68 261.9 149 100.0
BolC4t27019H Brassica oleracea HOM05D007253 ORTHO05D009055 1.6e-66 256.1 149 97.3
A04p19250 Brassica napus HOM05D007253 ORTHO05D009055 2.1e-66 255.8 149 97.3
BraA04t17525Z Brassica rapa HOM05D007253 ORTHO05D009055 2.1e-66 255.8 149 97.3
BcaB06g28020 Brassica carinata HOM05D007253 ORTHO05D009055 1.2e-64 250.0 149 95.3
Thhalv10000367m.g Eutrema salsugineum HOM05D007253 ORTHO05D009055 2.8e-58 228.8 149 89.9
Sp4g03910 Schrenkiella parvula HOM05D007253 ORTHO05D009055 5.2e-57 224.6 149 86.6
AT2G24860 Arabidopsis thaliana HOM05D007253 ORTHO05D009055 7.8e-53 210.7 149 83.2
CARHR116800 Cardamine hirsuta HOM05D007253 ORTHO05D009055 5.0e-52 208.0 148 84.5
AL4G15950 Arabidopsis lyrata HOM05D007253 ORTHO05D009055 6.6e-52 207.6 150 83.3
Carub.0004s0449 Capsella rubella HOM05D007253 ORTHO05D009055 1.1e-49 200.3 148 81.1
Aa31LG7G11560 Aethionema arabicum HOM05D007253 ORTHO05D009055 1.4e-49 199.9 148 81.8
THA.LOC104803610 Tarenaya hassleriana HOM05D007253 ORTHO05D009055 4.4e-40 168.3 145 73.8
Actinidia14140 Actinidia chinensis HOM05D007253 ORTHO05D009055 3.0e-36 155.6 147 66.7
CSS0046604 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 3.0e-36 155.6 151 65.6
CSS0050010 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 3.0e-36 155.6 151 65.6
TWI63G1073 Tripterygium wilfordii HOM05D007253 ORTHO05D009055 1.5e-35 153.3 155 67.1
Ciclev10009764m.g Citrus clementina HOM05D007253 ORTHO05D009055 9.5e-35 150.6 148 68.2
COL.COLO4_18974 Corchorus olitorius HOM05D007253 ORTHO05D009055 9.5e-35 150.6 149 66.4
Manes.03G007000 Manihot esculenta HOM05D007253 ORTHO05D009055 9.5e-35 150.6 150 66.7
RcHm_v2.0_Chr6g0299201 Rosa chinensis HOM05D007253 ORTHO05D009055 1.6e-34 149.8 151 64.9
Eucgr.C04033 Eucalyptus grandis HOM05D007253 ORTHO05D009055 2.1e-34 149.4 146 72.6
Prupe.1G396700 Prunus persica HOM05D007253 ORTHO05D009055 2.1e-34 149.4 150 64.7
Thecc.09G013200 Theobroma cacao HOM05D007253 ORTHO05D009055 2.1e-34 149.4 154 67.5
PGR044G0212 Punica granatum HOM05D007253 ORTHO05D009055 2.8e-34 149.1 139 69.8
Cpa.g.sc148.44 Carica papaya HOM05D007253 ORTHO05D009055 3.6e-34 148.7 147 66.0
Sc09g0010780 Simmondsia chinensis HOM05D007253 ORTHO05D009055 3.6e-34 148.7 146 66.4
Dinv03404 Davidia involucrata HOM05D007253 ORTHO05D009055 6.2e-34 147.9 151 64.9
CSS0024958 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 1.1e-33 147.1 156 60.3
Nn8g40104 Nelumbo nucifera HOM05D007253 ORTHO05D009055 1.8e-33 146.4 100 87.0
Duzib187G0122 Durio zibethinus HOM05D007253 ORTHO05D009055 2.4e-33 146.0 148 63.5
FAN27G1409 Fragaria x ananassa HOM05D007253 ORTHO05D009055 4.0e-33 145.2 147 65.3
FvH4_2g41340 Fragaria vesca HOM05D007253 ORTHO05D009055 8.9e-33 144.1 147 64.6
TAR626G1108 Trochodendron aralioides HOM05D007253 ORTHO05D009055 8.9e-33 144.1 147 63.9
Duzib168G0559 Durio zibethinus HOM05D007253 ORTHO05D009055 1.2e-32 143.7 122 76.2
Lj1g0002882 Lotus japonicus HOM05D007253 ORTHO05D009055 1.2e-32 143.7 151 62.9
CSS0026470 Camellia sinensis var. sinensis HOM05D007253 ORTHO05D009055 2.0e-32 142.9 130 66.9
Gohir.D05G063600 Gossypium hirsutum HOM05D007253 ORTHO05D009055 2.0e-32 142.9 153 65.4
Psat5g033080 Pisum sativum HOM05D007253 ORTHO05D009055 2.0e-32 142.9 140 67.9
CiPaw.07G233200 Carya illinoinensis HOM05D007253 ORTHO05D009055 2.6e-32 142.5 152 63.8
Medtr3g105830 Medicago truncatula HOM05D007253 ORTHO05D009055 2.6e-32 142.5 140 67.9
MD15G1043300 Malus domestica HOM05D007253 ORTHO05D009055 3.4e-32 142.1 149 64.4
Gorai.009G064300 Gossypium raimondii HOM05D007253 ORTHO05D009055 9.9e-32 140.6 153 65.4
GSVIVG01035999001 Vitis vinifera HOM05D007253 ORTHO05D009055 1.3e-31 140.2 100 87.0
FAN15G3156 Fragaria x ananassa HOM05D007253 ORTHO05D009055 1.7e-31 139.8 147 63.3
HanXRQChr13g0413301 Helianthus annuus HOM05D007253 ORTHO05D009055 1.7e-31 139.8 101 82.2
TPR.G1881 Trifolium pratense HOM05D007253 ORTHO05D009055 1.7e-31 139.8 145 64.1
Nitab4.5_0000264g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 2.2e-31 139.4 148 62.8
Potri.006G266800 Populus trichocarpa HOM05D007253 ORTHO05D009055 2.2e-31 139.4 143 64.3
CDE05G3047 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 2.9e-31 139.0 144 68.1
MBI14_g31385_MAGBIO Magnolia biondii HOM05D007253 ORTHO05D009055 2.9e-31 139.0 145 63.4
Hund25608 Selenicereus undatus HOM05D007253 ORTHO05D009055 2.9e-31 139.0 157 56.7
Nitab4.5_0005450g0020 Nicotiana tabacum HOM05D007253 ORTHO05D009055 3.8e-31 138.7 146 63.7
MELO3C016946.2 Cucumis melo HOM05D007253 ORTHO05D009055 4.9e-31 138.3 152 61.8
Atru.chr7.2576 Acer truncatum HOM05D007253 ORTHO05D009055 6.4e-31 137.9 153 60.8
ATR0580G321 Amborella trichopoda HOM05D007253 ORTHO05D009055 6.4e-31 137.9 145 64.8
Aqoxy7G03301 Aquilegia oxysepala HOM05D007253 ORTHO05D009055 1.4e-30 136.7 101 65.3
HPP92_010354 Vanilla planifolia HOM05D007253 ORTHO05D009055 1.4e-30 136.7 99 85.9
arahy.Tifrunner.gnm1.ann1.LF5WZD Arachis hypogaea HOM05D007253 ORTHO05D009055 1.9e-30 136.3 121 73.6
ClCG05G016120 Citrullus lanatus HOM05D007253 ORTHO05D009055 1.9e-30 136.3 152 61.8
Cc08_g07700 Coffea canephora HOM05D007253 ORTHO05D009055 1.9e-30 136.3 149 65.1
CANSAT35G1478 Cannabis sativa HOM05D007253 ORTHO05D009055 3.2e-30 135.6 156 60.3
MD08G1052200 Malus domestica HOM05D007253 ORTHO05D009055 3.2e-30 135.6 119 59.7
PSO063G6023 Papaver somniferum HOM05D007253 ORTHO05D009055 4.1e-30 135.2 147 61.9
Lalb_Chr23g0268151 Lupinus albus HOM05D007253 ORTHO05D009055 5.4e-30 134.8 148 62.2
Os09g0423700 Oryza sativa ssp. japonica HOM05D007253 ORTHO05D009055 7.1e-30 134.4 138 64.5
Lsat_1_v5_gn_6_77860 Lactuca sativa HOM05D007253 ORTHO05D009055 9.2e-30 134.0 101 83.2
Sed0002011 Sechium edule HOM05D007253 ORTHO05D009055 1.2e-29 133.7 100 77.0
Ah.00g238170 Amaranthus hybridus HOM05D007253 ORTHO05D009055 1.6e-29 133.3 101 77.2
ECA240G1715 Erigeron canadensis HOM05D001941 ORTHO05D002198 2.7e-29 132.5 98 81.6
PSO782G0429 Papaver somniferum HOM05D007253 ORTHO05D009055 2.7e-29 132.5 147 61.2
SGA_v2.0_scaffold4G02163 Striga asiatica HOM05D007253 ORTHO05D009055 3.5e-29 132.1 106 76.4
Ah.12g060580 Amaranthus hybridus HOM05D007253 ORTHO05D009055 4.6e-29 131.7 160 56.9
Oeu023241.1 Olea europaea HOM05D007253 ORTHO05D009055 6.0e-29 131.3 143 63.6
MSTRG.13960 Avicennia marina HOM05D007253 ORTHO05D009055 7.8e-29 131.0 119 72.3
Phvul.009G086100 Phaseolus vulgaris HOM05D007253 ORTHO05D009055 1.0e-28 130.6 108 77.8
Migut.E01444 Erythranthe guttata HOM05D007253 ORTHO05D009055 1.3e-28 130.2 107 77.6
SalBow8G5515 Salvia bowleyana HOM05D007253 ORTHO05D009055 1.7e-28 129.8 117 71.8
CAN.G285.13 Capsicum annuum HOM05D007253 ORTHO05D009055 2.3e-28 129.4 101 75.2
Potri.018G016400 Populus trichocarpa HOM05D007253 ORTHO05D009055 3.9e-28 128.6 97 82.5
arahy.Tifrunner.gnm1.ann1.G7TND8 Arachis hypogaea HOM05D007253 ORTHO05D009055 5.1e-28 128.3 147 61.2
EL10Ac2g02465 Beta vulgaris HOM05D007253 ORTHO05D009055 8.7e-28 127.5 150 56.7
arahy.Tifrunner.gnm1.ann1.2K72KI Arachis hypogaea HOM05D007253 ORTHO05D009055 1.5e-27 126.7 146 60.3
DCAR_000661 Daucus carota HOM05D007253 ORTHO05D009055 1.5e-27 126.7 100 81.0
Solyc08g006620.3 Solanum lycopersicum HOM05D007253 ORTHO05D009055 1.9e-27 126.3 101 75.2
Sopen08g002570 Solanum pennellii HOM05D007253 ORTHO05D009055 1.9e-27 126.3 101 75.2
Zm00001eb313320 Zea mays HOM05D007253 ORTHO05D009055 1.9e-27 126.3 77 75.3
Glyma.06G060300 Glycine max HOM05D007253 ORTHO05D009055 2.5e-27 125.9 99 78.8
Glyma.04G059900 Glycine max HOM05D007253 ORTHO05D009055 4.3e-27 125.2 99 76.8
Glyma.17G221800 Glycine max HOM05D007253 ORTHO05D009055 7.3e-27 124.4 105 76.2
vmacro05116 Vaccinium macrocarpon HOM05D007253 ORTHO05D009055 1.2e-26 123.6 135 63.0
CDE02G4354 Ceratophyllum demersum HOM05D007253 ORTHO05D009055 3.6e-26 122.1 93 83.9
Glyma.14G104200 Glycine max HOM05D007253 ORTHO05D009055 4.7e-26 121.7 105 75.2
unitig_32.g11120 Utricularia gibba HOM05D007253 ORTHO05D009055 1.1e-25 120.6 98 77.6
SEGI_37228 Sequoiadendron giganteum HOM05D007253 ORTHO05D009055 1.5e-24 116.7 104 72.1
TAR383G0216 Trochodendron aralioides HOM05D007253 ORTHO05D009055 3.2e-22 109.0 77 84.4
Pp3c6_11160 Physcomitrium patens HOM05D007253 ORTHO05D009055 2.1e-21 106.3 110 66.4
AagrBONN_evm.TU.Sc2ySwM_117.2542 Anthoceros agrestis HOM05D007253 ORTHO05D009055 7.8e-21 104.4 100 67.0
Peaxi162Scf00045g01937 Petunia axillaris HOM05D007253 ORTHO05D009055 3.0e-20 102.4 84 77.4
Mapoly0121s0030 Marchantia polymorpha HOM05D007253 ORTHO05D009055 6.6e-20 101.3 115 59.1
AUR62032436 Chenopodium quinoa HOM05D007253 ORTHO05D009055 2.5e-19 99.4 73 82.2
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 1.6e-18 96.7 74 77.0
SMO196G0205 Selaginella moellendorffii HOM05D007253 ORTHO05D009055 4.8e-18 95.1 81 71.6
Gohir.A05G061100 Gossypium hirsutum HOM05D007253 ORTHO05D009055 4.3e-11 72.0 94 51.1
Cfa013009 Carpinus fangiana HOM05D018710 ORTHO05D009055 7.1e-06 54.7 101 43.6


User provided reference genes

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