Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08282 Brassica carinata HOM05D000881 ORTHO05D000666 3.3e-111 405.2 226 100.0
BcaC02g08281 Brassica carinata HOM05D000881 ORTHO05D000666 2.3e-101 372.5 237 92.0
BolC4t27167H Brassica oleracea HOM05D000881 ORTHO05D000666 2.3e-101 372.5 237 92.0
C04p56370 Brassica napus HOM05D000881 ORTHO05D000666 6.4e-99 364.4 237 89.5
A04p20590 Brassica napus HOM05D000881 ORTHO05D000666 1.9e-87 326.2 237 83.5
BcaB06g28112 Brassica carinata HOM05D000881 ORTHO05D000666 8.7e-80 300.8 237 70.5
BcaB01g03051 Brassica carinata HOM05D000881 ORTHO05D000666 1.3e-70 270.4 237 65.8
A03p26740 Brassica napus HOM05D000881 ORTHO05D000666 9.0e-69 264.2 237 64.6
C03p32040 Brassica napus HOM05D000881 ORTHO05D000666 2.9e-67 259.2 237 63.3
BcaC01g04924 Brassica carinata HOM05D000881 ORTHO05D000666 3.8e-67 258.8 237 63.3
Sp4g09910 Schrenkiella parvula HOM05D000881 ORTHO05D000666 9.3e-66 254.2 237 62.4
Thhalv10002090m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 2.2e-59 233.0 237 62.4
AL4G20880 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 4.6e-57 225.3 247 56.3
AT2G27140 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 3.7e-54 215.7 248 54.4
CARHR119520 Cardamine hirsuta HOM05D000881 ORTHO05D000666 6.9e-53 211.5 243 52.3
Carub.0004s0767 Capsella rubella HOM05D000881 ORTHO05D000666 1.3e-48 197.2 244 48.8
THA.LOC104826481 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 4.7e-25 119.0 261 37.2
THA.LOC104800495 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 6.7e-24 115.2 250 36.0
Aa31LG5G8550 Aethionema arabicum HOM05D000881 ORTHO05D000666 3.3e-23 112.8 231 36.8
Sp6g23550 Schrenkiella parvula HOM05D000881 ORTHO05D000666 3.7e-14 82.8 223 30.9
Aa31LG1G13760 Aethionema arabicum HOM05D000881 ORTHO05D000666 4.1e-13 79.3 230 29.1
A03p10370 Brassica napus HOM05D000881 ORTHO05D000666 4.1e-13 79.3 221 29.4
BraA03t10349Z Brassica rapa HOM05D000881 ORTHO05D000666 4.1e-13 79.3 221 29.4
THA.LOC104810968 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 9.1e-13 78.2 110 39.1
C02p10560 Brassica napus HOM05D000881 ORTHO05D000666 2.0e-12 77.0 225 28.9
BolC3t13661H Brassica oleracea HOM05D000881 ORTHO05D000666 2.0e-12 77.0 220 28.6
BraA02t05608Z Brassica rapa HOM05D000881 ORTHO05D000666 2.0e-12 77.0 225 28.9
AT5G20970 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 5.9e-12 75.5 230 34.3
BolC2t07090H Brassica oleracea HOM05D000881 ORTHO05D000666 5.9e-12 75.5 220 27.7
BcaNung05754 Brassica carinata HOM05D000881 ORTHO05D000666 7.7e-12 75.1 225 28.4
C03p11910 Brassica napus HOM05D000881 ORTHO05D000666 7.7e-12 75.1 225 28.4
BcaC03g13822 Brassica carinata HOM05D000881 ORTHO05D000666 1.0e-11 74.7 223 27.4
BNapus_Darmor_BZH_scaffold_38p01230 Brassica napus HOM05D000881 ORTHO05D000666 1.0e-11 74.7 223 27.8
Ciclev10016041m.g Citrus clementina HOM05D000881 ORTHO05D000666 1.0e-11 74.7 134 37.3
Carub.0006s1929 Capsella rubella HOM05D000881 ORTHO05D000666 1.7e-11 73.9 233 35.6
BcaC04g19495 Brassica carinata HOM05D000881 ORTHO05D000666 2.2e-11 73.6 131 33.6
A10p19060 Brassica napus HOM05D000881 ORTHO05D000666 2.2e-11 73.6 131 35.1
C09p55080 Brassica napus HOM05D000881 ORTHO05D000666 2.2e-11 73.6 131 33.6
BraA10t43985Z Brassica rapa HOM05D000881 ORTHO05D000666 5.0e-11 72.4 131 34.4
Thhalv10014544m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 5.0e-11 72.4 225 28.0
CARHR191870 Cardamine hirsuta HOM05D000881 ORTHO05D000666 6.5e-11 72.0 117 33.3
Cpa.g.sc103.98 Carica papaya HOM05D000881 ORTHO05D000666 6.5e-11 72.0 106 37.7
AL6G32540 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 8.5e-11 71.6 229 34.1
BolC9t58372H Brassica oleracea HOM05D000881 ORTHO05D000666 1.5e-10 70.9 230 26.1
Dinv05245 Davidia involucrata HOM05D000881 ORTHO05D000666 1.5e-10 70.9 227 27.8
MBI11_g45239_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 1.5e-10 70.9 253 28.1
Sabra09G0120900 Salix brachista HOM05D000881 ORTHO05D000666 4.2e-10 69.3 103 37.9
MBI11_g07704_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 5.5e-10 68.9 99 39.4
Potri.004G191101 Populus trichocarpa HOM05D000881 ORTHO05D000666 5.5e-10 68.9 149 33.6
Phvul.008G209800 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 2.1e-09 67.0 130 30.8
Potri.004G191200 Populus trichocarpa HOM05D000881 ORTHO05D000666 2.7e-09 66.6 149 32.9
TPR.G11722 Trifolium pratense HOM05D000881 ORTHO05D000666 8.0e-09 65.1 92 41.3
Glyma.14G045300 Glycine max HOM05D000881 ORTHO05D000666 1.4e-08 64.3 132 32.6
Eucgr.J00611 Eucalyptus grandis HOM05D000881 ORTHO05D000666 3.0e-08 63.2 262 25.6
Hma1.2p1_0218F.1_g092410 Hydrangea macrophylla HOM05D000881 ORTHO05D000666 3.0e-08 63.2 130 33.1
Manes.11G105400 Manihot esculenta HOM05D000881 ORTHO05D000666 3.0e-08 63.2 136 28.7
Psat2g023400 Pisum sativum HOM05D000881 ORTHO05D000666 3.0e-08 63.2 127 33.9
BcaB05g22794 Brassica carinata HOM05D000881 ORTHO05D000666 4.0e-08 62.8 115 32.2
Lsat_1_v5_gn_7_14200 Lactuca sativa HOM05D000881 ORTHO05D000666 4.0e-08 62.8 142 32.4
Lalb_Chr04g0249781 Lupinus albus HOM05D000881 ORTHO05D000666 4.0e-08 62.8 108 34.3
MD11G1178700 Malus domestica HOM05D000881 ORTHO05D000666 4.0e-08 62.8 127 33.9
Glyma.10G106800 Glycine max HOM05D000881 ORTHO05D000666 5.2e-08 62.4 136 28.7
Medtr5g087450 Medicago truncatula HOM05D000881 ORTHO05D000666 5.2e-08 62.4 133 32.3
Potri.009G153200 Populus trichocarpa HOM05D000881 ORTHO05D000666 5.2e-08 62.4 139 31.7
Sabra04G0129700 Salix brachista HOM05D000881 ORTHO05D000666 5.2e-08 62.4 102 38.2
Prupe.6G151500 Prunus persica HOM05D000881 ORTHO05D000666 6.8e-08 62.0 101 34.7
Sabra04G0129800 Salix brachista HOM05D000881 ORTHO05D000666 6.8e-08 62.0 138 32.6
TWI75G0903 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 6.8e-08 62.0 132 32.6
arahy.Tifrunner.gnm1.ann1.PZF4SB Arachis hypogaea HOM05D000881 ORTHO05D000666 8.8e-08 61.6 139 30.2
PSO339G4238 Papaver somniferum HOM05D000881 ORTHO05D000666 8.8e-08 61.6 93 35.5
LjContig00564g0024719 Lotus japonicus HOM05D000881 ORTHO05D000666 1.2e-07 61.2 127 34.6
arahy.Tifrunner.gnm1.ann1.ZVX95B Arachis hypogaea HOM05D000881 ORTHO05D000666 1.5e-07 60.8 121 31.4
PGR119G0695 Punica granatum HOM05D000881 ORTHO05D000666 1.5e-07 60.8 143 30.1
QL01p018558 Quercus lobata HOM05D000881 ORTHO05D000666 1.5e-07 60.8 100 33.0
VMungo0647G1281 Vigna mungo HOM05D000881 ORTHO05D000666 2.0e-07 60.5 127 29.9
Sabra09G0120800 Salix brachista HOM05D000881 ORTHO05D000666 2.6e-07 60.1 90 36.7
TWI31G1146 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 2.6e-07 60.1 102 34.3
PSO384G3004 Papaver somniferum HOM05D000881 ORTHO05D000666 3.4e-07 59.7 130 28.5
Nn2g15728 Nelumbo nucifera HOM05D000881 ORTHO05D000666 4.4e-07 59.3 138 29.0
Psat2g023200 Pisum sativum HOM05D000881 ORTHO05D000666 4.4e-07 59.3 134 32.8
Ah.08g222540 Amaranthus hybridus HOM05D000881 ORTHO05D000666 5.7e-07 58.9 93 36.6
TPR.G19878 Trifolium pratense HOM05D000881 ORTHO05D000666 5.7e-07 58.9 50 52.0
arahy.Tifrunner.gnm1.ann1.ED5JXQ Arachis hypogaea HOM05D000881 ORTHO05D000666 7.5e-07 58.5 89 34.8
Haze_23630 Corylus avellana HOM05D000881 ORTHO05D000666 7.5e-07 58.5 131 31.3
Hma1.2p1_0218F.1_g092400 Hydrangea macrophylla HOM05D000881 ORTHO05D000666 9.8e-07 58.2 131 32.1
MBI11_g17410_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 9.8e-07 58.2 132 31.8
Psat1g121560 Pisum sativum HOM05D000881 ORTHO05D000666 9.8e-07 58.2 106 32.1
Potri.009G153100 Populus trichocarpa HOM05D000881 ORTHO05D000666 9.8e-07 58.2 127 32.3
Glyma.14G045400 Glycine max HOM05D000881 ORTHO05D000666 1.3e-06 57.8 136 27.9
Medtr6g478190 Medicago truncatula HOM05D000881 ORTHO05D000666 1.3e-06 57.8 50 50.0
Peaxi162Scf00217g00619 Petunia axillaris HOM05D000881 ORTHO05D000666 1.3e-06 57.8 248 27.0
AUR62001592 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.7e-06 57.4 237 25.7
Phvul.001G113500 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 1.7e-06 57.4 42 47.6
Atru.chr3.3015 Acer truncatum HOM05D000881 ORTHO05D000666 2.2e-06 57.0 137 29.9
AUR62001593 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.2e-06 57.0 236 26.7
FAN16G3407 Fragaria x ananassa HOM05D000881 ORTHO05D000666 2.2e-06 57.0 135 31.1
Manes.04G055300 Manihot esculenta HOM05D000881 ORTHO05D000666 2.2e-06 57.0 114 30.7
arahy.Tifrunner.gnm1.ann1.DQ4RIU Arachis hypogaea HOM05D000881 ORTHO05D000666 2.8e-06 56.6 88 33.0
EL10Ac7g16246 Beta vulgaris HOM05D000881 ORTHO05D000666 2.8e-06 56.6 112 33.9
CSS0033822 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 2.8e-06 56.6 140 28.6
CDE07G1560 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 2.8e-06 56.6 102 33.3
Dinv32138 Davidia involucrata HOM05D000881 ORTHO05D000666 2.8e-06 56.6 142 29.6
HanXRQChr16g0516881 Helianthus annuus HOM05D000881 ORTHO05D000666 2.8e-06 56.6 125 33.6
LjContig00564g0002053 Lotus japonicus HOM05D000881 ORTHO05D000666 2.8e-06 56.6 143 30.1
Phvul.008G209700 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 2.8e-06 56.6 99 32.3
arahy.Tifrunner.gnm1.ann1.U52HT2 Arachis hypogaea HOM05D000881 ORTHO05D000666 3.7e-06 56.2 132 31.1
AUR62014290 Chenopodium quinoa HOM05D000881 ORTHO05D000666 3.7e-06 56.2 103 31.1
AUR62020188 Chenopodium quinoa HOM05D000881 ORTHO05D000666 3.7e-06 56.2 235 26.0
Rhsim03G0053800 Rhododendron simsii HOM05D000881 ORTHO05D000666 3.7e-06 56.2 106 34.9
RcHm_v2.0_Chr5g0049611 Rosa chinensis HOM05D000881 ORTHO05D000666 3.7e-06 56.2 97 33.0
Potri.010G245500 Populus trichocarpa HOM05D000881 ORTHO05D000666 4.9e-06 55.8 131 30.5
Sc21g0006600 Simmondsia chinensis HOM05D000881 ORTHO05D000666 4.9e-06 55.8 117 29.9
VMungo1309G2673 Vigna mungo HOM05D000881 ORTHO05D000666 4.9e-06 55.8 111 33.3
Actinidia03943 Actinidia chinensis HOM05D000881 ORTHO05D000666 6.3e-06 55.5 114 27.2
AUR62020187 Chenopodium quinoa HOM05D000881 ORTHO05D000666 6.3e-06 55.5 112 36.6
Phvul.009G196600 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 6.3e-06 55.5 100 33.0
Hund18820 Selenicereus undatus HOM05D000881 ORTHO05D000666 6.3e-06 55.5 248 24.2
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 8.3e-06 55.1 106 30.2
CiPaw.13G128700 Carya illinoinensis HOM05D000881 ORTHO05D000666 8.3e-06 55.1 101 30.7
Glyma.09G165300 Glycine max HOM05D000881 ORTHO05D000666 8.3e-06 55.1 102 33.3
Glyma.16G038600 Glycine max HOM05D000881 ORTHO05D000666 8.3e-06 55.1 39 48.7
Manes.04G059912 Manihot esculenta HOM05D000881 ORTHO05D000666 8.3e-06 55.1 131 29.0
Sopen01g004670 Solanum pennellii HOM05D000881 ORTHO05D000666 8.3e-06 55.1 109 33.9
TAR623G1394 Trochodendron aralioides HOM05D000881 ORTHO05D000666 8.3e-06 55.1 136 30.9


User provided reference genes

Program Settings