Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 4.4e-45 184.1 85 100.0
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 1.5e-29 132.5 70 88.6
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 3.0e-25 118.2 83 71.1
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-23 112.8 94 62.8
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 4.5e-21 104.4 145 44.1
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 7.6e-21 103.6 145 43.4
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 7.6e-21 103.6 145 42.8
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.0e-20 103.2 145 43.4
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 1.3e-20 102.8 145 43.4
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-20 102.8 145 43.4
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.3e-20 102.8 145 43.4
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 3.8e-20 101.3 145 43.4
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 3.8e-20 101.3 145 43.4
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.4e-19 99.4 145 42.1
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.4e-19 99.4 145 42.1
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.4e-19 99.4 145 42.1
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 1.0e-17 93.2 143 39.9
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.5e-16 89.4 75 57.3
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 1.3e-15 86.3 118 42.4
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 1.6e-15 85.9 102 46.1
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 1.6e-15 85.9 118 42.4
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.6e-15 85.9 117 41.9
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 2.2e-15 85.5 118 41.5
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 3.7e-15 84.7 118 40.7
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 4.8e-15 84.3 118 40.7
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 4.8e-15 84.3 118 40.7
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 6.3e-15 84.0 118 41.5
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 8.2e-15 83.6 118 41.5
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 1.1e-14 83.2 118 41.5
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 1.1e-14 83.2 118 41.5
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 1.4e-14 82.8 118 41.5
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 2.4e-14 82.0 118 40.7
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 2.4e-14 82.0 118 40.7
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 2.4e-14 82.0 118 40.7
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 2.4e-14 82.0 118 41.5
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 2.4e-14 82.0 118 39.8
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 5.3e-14 80.9 118 40.7
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 5.3e-14 80.9 116 40.5
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 6.9e-14 80.5 121 38.8
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 6.9e-14 80.5 118 40.7
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 6.9e-14 80.5 118 39.8
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 9.0e-14 80.1 118 39.8
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 9.0e-14 80.1 118 39.8
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 9.0e-14 80.1 118 40.7
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 9.0e-14 80.1 118 39.8
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 9.0e-14 80.1 118 40.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 9.0e-14 80.1 118 39.8
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 1.2e-13 79.7 118 39.8
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 1.5e-13 79.3 118 40.7
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 1.5e-13 79.3 118 39.8
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.5e-13 79.3 118 39.8
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.5e-13 79.3 118 39.8
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 1.5e-13 79.3 115 40.9
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 2.0e-13 79.0 118 39.8
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 2.0e-13 79.0 118 39.8
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 2.0e-13 79.0 118 39.8
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 3.4e-13 78.2 118 39.8
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 3.4e-13 78.2 118 39.0
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 3.4e-13 78.2 118 39.0
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 3.4e-13 78.2 118 38.1
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 3.4e-13 78.2 118 39.8
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 3.4e-13 78.2 118 39.0
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 3.4e-13 78.2 118 39.8
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 4.5e-13 77.8 118 39.8
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 5.9e-13 77.4 118 39.0
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 5.9e-13 77.4 108 39.8
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 5.9e-13 77.4 108 40.7
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 5.9e-13 77.4 118 39.8
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 7.7e-13 77.0 118 39.0
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 7.7e-13 77.0 118 39.0
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 7.7e-13 77.0 118 39.0
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 7.7e-13 77.0 118 39.0
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 7.7e-13 77.0 118 38.1
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 7.7e-13 77.0 118 39.0
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 7.7e-13 77.0 118 39.0
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 1.3e-12 76.3 124 37.9
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.3e-12 76.3 128 36.7
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.7e-12 75.9 118 39.0
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 1.7e-12 75.9 118 38.1
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 1.7e-12 75.9 118 38.1
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.7e-12 75.9 108 39.8
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 1.7e-12 75.9 118 39.0
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 2.9e-12 75.1 118 38.1
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 2.9e-12 75.1 118 39.0
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 5.0e-12 74.3 118 38.1
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 6.5e-12 73.9 133 35.3
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 8.5e-12 73.6 118 36.4
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.1e-11 73.2 118 39.0
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.1e-11 73.2 118 36.4
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.1e-11 73.2 117 36.8
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 1.1e-11 73.2 118 36.4
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 1.1e-11 73.2 118 36.4
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 1.4e-11 72.8 118 38.1
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 1.4e-11 72.8 115 38.3
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 1.4e-11 72.8 118 39.0
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 1.4e-11 72.8 118 39.0
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.2e-11 71.6 118 36.4
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 1.2e-10 69.7 118 36.4
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.6e-10 69.3 118 36.4
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 1.6e-10 69.3 118 36.4
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.6e-10 67.8 158 31.0
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 6.1e-10 67.4 118 35.6
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 1.0e-09 66.6 118 35.6
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 1.4e-09 66.2 118 35.6
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.0e-09 65.1 118 35.6
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.0e-09 65.1 108 35.2
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 8.8e-09 63.5 54 55.6
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 5.7e-08 60.8 115 33.9
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 7.4e-08 60.5 118 33.9
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 9.7e-08 60.1 32 78.1
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 9.1e-06 53.5 39 61.5


User provided reference genes

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