Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 2.9e-52 208.4 113 100.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 2.9e-52 208.4 113 100.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 2.9e-52 208.4 113 100.0
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 2.3e-49 198.7 111 99.1
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 2.3e-49 198.7 111 99.1
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 3.3e-48 194.9 116 95.7
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 6.3e-47 190.7 114 92.1
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 4.5e-45 184.5 117 89.7
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 3.6e-42 174.9 117 87.2
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 3.6e-42 174.9 117 87.2
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 3.6e-42 174.9 117 87.2
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 8.0e-42 173.7 116 87.1
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 2.3e-41 172.2 118 84.7
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 9.8e-40 166.8 113 80.5
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 4.1e-38 161.4 116 79.3
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 9.1e-38 160.2 116 78.4
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 1.2e-34 149.8 114 74.6
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 3.6e-34 148.3 116 78.4
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 5.7e-32 141.0 105 81.9
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.7e-31 139.4 118 72.9
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 3.7e-31 138.3 121 69.4
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 4.0e-25 118.2 119 63.0
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 6.8e-25 117.5 119 61.3
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 8.9e-25 117.1 119 62.2
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.2e-24 116.7 116 61.2
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.2e-24 116.7 116 61.2
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.6e-24 115.5 116 60.3
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 7.5e-24 114.0 116 60.3
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.3e-23 113.2 117 62.4
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.3e-23 113.2 118 62.7
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 1.7e-23 112.8 123 60.2
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 2.9e-23 112.1 123 59.3
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.9e-23 112.1 123 58.5
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 4.9e-23 111.3 121 56.2
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.4e-23 110.9 119 62.2
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.4e-23 110.9 118 62.7
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.1e-22 110.2 120 60.0
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.1e-22 110.2 121 57.0
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.1e-22 110.2 121 57.9
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.4e-22 109.8 119 57.1
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.4e-22 109.8 118 61.9
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.8e-22 109.4 111 56.8
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 3.2e-22 108.6 119 56.3
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 3.2e-22 108.6 114 59.6
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 4.1e-22 108.2 119 55.5
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 4.1e-22 108.2 117 57.3
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 5.4e-22 107.8 117 58.1
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 7.0e-22 107.5 123 55.3
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 9.2e-22 107.1 118 60.2
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.2e-21 106.7 113 56.6
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 1.2e-21 106.7 126 61.1
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.6e-21 106.3 119 58.8
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.6e-21 106.3 120 55.8
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 2.0e-21 105.9 116 56.9
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 2.0e-21 105.9 117 59.0
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.7e-21 105.5 108 57.4
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.7e-21 105.5 113 55.8
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.7e-21 105.5 123 61.0
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.7e-21 105.5 119 58.0
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 4.6e-21 104.8 119 56.3
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.6e-21 104.8 119 58.8
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 4.6e-21 104.8 121 55.4
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 4.6e-21 104.8 118 54.2
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.9e-21 104.4 119 60.5
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 5.9e-21 104.4 122 53.3
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 7.8e-21 104.0 119 58.0
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 7.8e-21 104.0 114 59.6
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 7.8e-21 104.0 117 55.6
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 1.3e-20 103.2 124 52.4
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.7e-20 102.8 119 57.1
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 1.7e-20 102.8 111 56.8
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.3e-20 102.4 112 56.2
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 2.3e-20 102.4 115 53.9
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 3.9e-20 101.7 119 54.6
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 3.9e-20 101.7 119 53.8
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 3.9e-20 101.7 121 54.5
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 5.0e-20 101.3 121 53.7
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.0e-20 101.3 121 53.7
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 5.0e-20 101.3 117 51.3
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 5.0e-20 101.3 118 53.4
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 6.6e-20 100.9 114 55.3
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 6.6e-20 100.9 118 53.4
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 6.6e-20 100.9 121 52.1
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 6.6e-20 100.9 117 54.7
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 8.6e-20 100.5 120 55.8
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.1e-19 100.1 120 56.7
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.9e-19 99.4 121 52.9
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 3.3e-19 98.6 118 52.5
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 4.3e-19 98.2 112 54.5
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 4.3e-19 98.2 122 50.8
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 5.6e-19 97.8 121 52.9
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 9.5e-19 97.1 130 53.1
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 9.5e-19 97.1 116 55.2
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 9.5e-19 97.1 121 52.1
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.6e-18 96.3 104 55.8
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.1e-18 95.9 111 53.2
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 4.7e-18 94.7 117 53.8
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 4.7e-18 94.7 123 51.2
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 6.2e-18 94.4 122 49.2
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 6.2e-18 94.4 122 49.2
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 6.2e-18 94.4 117 53.0
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.4e-17 93.2 118 52.5
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 2.3e-17 92.4 115 51.3
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.1e-17 92.0 122 49.2
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 4.0e-17 91.7 107 50.5
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 6.8e-17 90.9 120 50.0
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 8.9e-17 90.5 113 49.6
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.5e-16 89.7 116 52.6
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 2.0e-16 89.4 109 55.0
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 4.4e-16 88.2 128 50.8
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 1.7e-15 86.3 123 45.5
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.7e-15 86.3 119 49.6
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 2.2e-15 85.9 120 48.3
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 9.2e-14 80.5 103 52.4
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 2.3e-12 75.9 120 45.0
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.9e-12 75.1 114 50.0
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 3.9e-12 75.1 115 46.1
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 6.6e-12 74.3 114 50.0
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 3.3e-11 72.0 106 50.0
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 5.6e-11 71.2 113 47.8
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 7.3e-11 70.9 153 37.9
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 1.6e-10 69.7 106 50.0
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 3.6e-10 68.6 115 42.6
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 6.2e-10 67.8 81 51.9
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 1.4e-09 66.6 81 50.6
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.3e-09 65.9 47 72.3
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 3.1e-09 65.5 87 47.1
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 3.1e-09 65.5 59 66.1
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.1e-09 65.5 112 39.3
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 8.9e-09 63.9 112 43.8
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.2e-08 63.5 78 52.6
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 4.4e-08 61.6 116 40.5
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 4.9e-07 58.2 70 51.4
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.4e-07 57.8 86 46.5
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 4.1e-06 55.1 76 47.4
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 7.1e-06 54.3 47 61.7


User provided reference genes

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