Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 6.0e-49 197.2 100 100.0
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 6.0e-49 197.2 100 100.0
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 6.0e-49 197.2 100 100.0
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 3.0e-48 194.9 100 99.0
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 7.3e-47 190.3 100 97.0
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 6.8e-45 183.7 100 93.0
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 4.3e-39 164.5 100 81.0
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 4.0e-37 157.9 102 80.4
CARHR120770 Cardamine hirsuta HOM05D014739 ORTHO05D007271 2.3e-32 142.1 101 74.3
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 1.8e-29 132.5 80 82.5
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 4.2e-10 68.2 96 45.8
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 9.3e-10 67.0 91 46.2
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 3.5e-09 65.1 94 45.7
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 6.0e-09 64.3 80 48.8
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 1.0e-08 63.5 97 45.4
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.3e-08 63.2 69 47.8
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 1.3e-08 63.2 96 42.7
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.3e-08 63.2 85 44.7
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 1.8e-08 62.8 96 46.9
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 2.3e-08 62.4 88 39.8
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 3.9e-08 61.6 84 40.5
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 5.1e-08 61.2 94 48.9
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 5.1e-08 61.2 94 48.9
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 5.1e-08 61.2 95 44.2
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 6.7e-08 60.8 90 48.9
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 6.7e-08 60.8 94 42.6
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 8.7e-08 60.5 68 47.1
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 1.1e-07 60.1 68 47.1
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 1.9e-07 59.3 65 52.3
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 1.9e-07 59.3 84 44.0
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 2.5e-07 58.9 87 42.5
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 2.5e-07 58.9 85 43.5
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.3e-07 58.5 66 47.0
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 5.7e-07 57.8 89 39.3
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 7.4e-07 57.4 92 44.6
Cpa.g.sc53.122 Carica papaya HOM05D009695 ORTHO05D007271 7.4e-07 57.4 57 52.6
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 7.4e-07 57.4 70 48.6
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 7.4e-07 57.4 87 41.4
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 9.6e-07 57.0 65 49.2
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 9.6e-07 57.0 68 44.1
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.3e-06 56.6 93 41.9
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 1.3e-06 56.6 86 39.5
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.1e-06 55.8 75 42.7
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 2.1e-06 55.8 72 44.4
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 2.1e-06 55.8 74 48.6
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 2.8e-06 55.5 107 39.3
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.8e-06 55.5 107 39.3
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.8e-06 55.5 107 39.3
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 3.7e-06 55.1 40 60.0
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 3.7e-06 55.1 65 49.2
MBI18_g25264_MAGBIO Magnolia biondii HOM05D022601 ORTHO05D023448 4.8e-06 54.7 81 39.5
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 6.2e-06 54.3 66 48.5
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 6.2e-06 54.3 92 37.0
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 6.2e-06 54.3 52 53.8
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 6.2e-06 54.3 91 40.7
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 6.2e-06 54.3 65 46.2
Glyma.10G208600 Glycine max HOM05D007861 ORTHO05D007271 8.2e-06 53.9 65 47.7
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 8.2e-06 53.9 61 50.8
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 8.2e-06 53.9 106 40.6
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 8.2e-06 53.9 57 49.1


User provided reference genes

Program Settings