Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 3.3e-68 261.5 129 100.0
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 6.7e-61 237.3 116 99.1
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 5.5e-55 217.6 121 88.4
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 5.5e-55 217.6 121 88.4
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 5.7e-52 207.6 121 84.3
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 3.7e-51 204.9 121 82.6
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 6.3e-51 204.1 121 83.5
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 8.2e-51 203.8 121 81.0
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-50 203.4 121 80.2
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 2.4e-50 202.2 121 76.9
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.2e-49 199.9 125 76.8
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 7.7e-49 197.2 121 81.0
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 2.9e-48 195.3 121 77.7
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 2.5e-47 192.2 121 76.0
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.0e-45 186.8 131 72.5
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.0e-45 186.8 131 72.5
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 3.0e-45 185.3 143 67.1
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 4.4e-44 181.4 131 70.2
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 2.0e-41 172.6 121 68.6
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.0e-40 170.2 122 65.6
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 5.0e-40 167.9 121 66.9
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 9.4e-39 163.7 121 64.5
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 1.2e-38 163.3 121 62.8
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 2.1e-38 162.5 125 64.0
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 2.7e-38 162.2 125 62.4
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 6.1e-38 161.0 121 63.6
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 1.0e-37 160.2 121 62.0
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 5.2e-37 157.9 121 62.0
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.8e-37 157.1 121 65.3
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.8e-37 157.1 121 65.3
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 8.8e-37 157.1 122 62.3
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 8.8e-37 157.1 121 64.5
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.2e-36 156.8 122 63.9
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.2e-36 156.8 121 63.6
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.2e-36 156.8 121 62.0
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 1.5e-36 156.4 121 63.6
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.5e-36 156.4 121 62.8
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.0e-36 156.0 115 66.1
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.0e-36 156.0 122 65.6
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 2.0e-36 156.0 115 63.5
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.6e-36 155.6 121 62.0
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 2.6e-36 155.6 123 64.2
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.6e-36 155.6 121 60.3
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 4.4e-36 154.8 122 63.1
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 4.4e-36 154.8 116 66.4
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 5.7e-36 154.5 121 60.3
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.5e-36 154.1 121 62.8
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.5e-36 154.1 121 62.8
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 7.5e-36 154.1 114 67.5
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 9.8e-36 153.7 122 62.3
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.3e-35 153.3 115 62.6
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.7e-35 152.9 121 58.7
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 2.2e-35 152.5 121 59.5
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 2.2e-35 152.5 123 61.0
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.8e-35 152.1 121 59.5
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.7e-35 151.8 121 61.2
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 3.7e-35 151.8 122 58.2
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 3.7e-35 151.8 123 62.6
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 4.8e-35 151.4 122 58.2
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.8e-35 151.4 122 63.1
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 8.3e-35 150.6 122 59.8
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.1e-34 150.2 122 63.1
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.4e-34 149.8 121 58.7
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.4e-34 149.8 121 56.2
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.8e-34 149.4 121 59.5
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.4e-34 149.1 121 61.2
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 2.4e-34 149.1 122 61.5
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.4e-34 149.1 116 62.1
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 5.4e-34 147.9 121 56.2
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 9.1e-34 147.1 122 56.6
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.2e-33 146.7 122 59.0
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 2.7e-33 145.6 116 60.3
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 2.7e-33 145.6 121 55.4
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.7e-33 145.6 126 57.9
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 5.9e-33 144.4 122 57.4
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 7.7e-33 144.1 75 92.0
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 7.7e-33 144.1 165 47.3
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.7e-32 142.9 75 92.0
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.7e-32 142.9 75 92.0
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.7e-32 142.9 122 56.6
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.7e-32 142.9 123 62.6
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.3e-32 142.5 116 59.5
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.3e-32 142.5 116 59.5
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 2.9e-32 142.1 139 52.5
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.8e-32 141.7 123 60.2
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.8e-32 141.7 123 60.2
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.8e-32 141.7 122 56.6
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 6.5e-32 141.0 123 62.6
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 6.5e-32 141.0 122 58.2
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 8.6e-32 140.6 116 59.5
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.9e-31 139.4 121 57.9
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.5e-31 139.0 122 61.5
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 3.2e-31 138.7 124 59.7
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.2e-31 138.7 123 61.0
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 4.2e-31 138.3 115 57.4
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 5.5e-31 137.9 123 61.0
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 5.5e-31 137.9 123 56.9
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.2e-30 136.7 122 50.8
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.6e-30 136.3 128 60.9
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.1e-30 136.0 117 57.3
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.8e-30 135.6 115 55.7
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 3.6e-30 135.2 115 54.8
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 6.1e-30 134.4 115 56.5
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.0e-29 133.7 116 55.2
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 1.4e-29 133.3 128 54.7
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 2.3e-29 132.5 161 44.1
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 4.0e-29 131.7 117 56.4
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 7.5e-28 127.5 133 48.9
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.8e-28 127.1 116 54.3
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.7e-27 125.2 117 53.0
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.7e-27 125.2 117 53.0
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 8.3e-27 124.0 118 53.4
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.1e-26 123.6 117 52.1
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.8e-26 122.9 123 54.5
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.8e-26 122.9 115 53.0
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.4e-26 122.5 120 52.5
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 3.1e-26 122.1 115 48.7
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 3.1e-26 122.1 115 48.7
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 3.1e-26 122.1 117 52.1
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 5.4e-26 121.3 122 51.6
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 9.2e-26 120.6 115 50.4
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 2.7e-25 119.0 115 47.8
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 3.8e-24 115.2 75 72.0
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 3.8e-24 115.2 153 37.9
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.2e-22 110.2 117 50.4
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 3.0e-21 105.5 116 48.3
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 8.9e-21 104.0 115 47.8
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.0e-20 102.8 137 40.9
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 5.7e-20 101.3 96 60.4
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 6.4e-19 97.8 78 57.7
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.2e-18 94.0 83 59.0
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.7e-16 89.7 103 46.6
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.3e-16 89.4 61 70.5
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.4e-13 80.1 121 36.4
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 5.4e-10 68.2 60 51.7
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.3e-08 63.5 75 42.7
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.7e-08 63.2 82 40.2
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 8.6e-08 60.8 94 36.2
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 4.3e-07 58.5 93 35.5
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 4.7e-06 55.1 52 46.2


User provided reference genes

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