Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08135 Brassica carinata HOM05D002560 ORTHO05D013255 2.4e-37 158.3 77 100.0
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 2.0e-36 155.2 75 100.0
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 2.0e-36 155.2 75 100.0
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 2.0e-36 155.2 75 100.0
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 2.0e-36 155.2 75 100.0
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 2.0e-36 155.2 75 100.0
BolC4t27326H Brassica oleracea HOM05D002560 ORTHO05D013255 2.0e-36 155.2 75 100.0
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 7.6e-36 153.3 75 98.7
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 7.1e-34 146.7 75 93.3
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 7.1e-34 146.7 75 93.3
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 7.1e-34 146.7 75 93.3
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 7.1e-34 146.7 75 93.3
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 9.3e-34 146.4 75 94.7
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 6.0e-33 143.7 75 92.0
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 3.9e-32 141.0 75 94.7
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 1.1e-31 139.4 75 93.3
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 1.1e-31 139.4 75 92.0
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.5e-31 139.0 75 93.3
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 7.4e-31 136.7 75 90.7
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.7e-27 125.6 75 81.3
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 3.8e-27 124.4 75 82.7
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 7.1e-26 120.2 75 78.7
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 4.6e-25 117.5 75 74.7
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 1.0e-24 116.3 75 77.3
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 2.3e-24 115.2 76 75.0
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 3.9e-24 114.4 75 73.3
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 3.9e-24 114.4 75 73.3
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 3.9e-24 114.4 75 76.0
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 5.1e-24 114.0 75 73.3
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 5.1e-24 114.0 75 73.3
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 5.1e-24 114.0 75 73.3
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 5.1e-24 114.0 75 72.0
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 8.7e-24 113.2 75 76.0
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 8.7e-24 113.2 75 76.0
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 8.7e-24 113.2 75 73.3
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 8.7e-24 113.2 75 73.3
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 8.7e-24 113.2 75 76.0
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.1e-23 112.8 75 74.7
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.1e-23 112.8 75 74.7
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 1.1e-23 112.8 75 73.3
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 1.1e-23 112.8 75 74.7
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 1.1e-23 112.8 75 74.7
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 1.1e-23 112.8 75 73.3
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 1.1e-23 112.8 75 74.7
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 1.5e-23 112.5 75 73.3
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.5e-23 112.5 75 73.3
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.5e-23 112.5 75 73.3
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.5e-23 112.5 75 73.3
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 1.9e-23 112.1 75 73.3
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 1.9e-23 112.1 75 74.7
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 1.9e-23 112.1 75 72.0
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.5e-23 111.7 74 74.3
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.5e-23 111.7 74 74.3
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.5e-23 111.7 75 73.3
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.5e-23 111.7 75 73.3
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 3.3e-23 111.3 75 73.3
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 3.3e-23 111.3 75 74.7
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 4.3e-23 110.9 75 72.0
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 4.3e-23 110.9 75 74.7
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 4.3e-23 110.9 75 74.7
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 4.3e-23 110.9 74 74.3
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 4.3e-23 110.9 75 72.0
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 4.3e-23 110.9 75 73.3
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 5.7e-23 110.5 75 72.0
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 5.7e-23 110.5 75 73.3
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 5.7e-23 110.5 75 73.3
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 5.7e-23 110.5 75 74.7
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 5.7e-23 110.5 75 73.3
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 9.6e-23 109.8 75 74.7
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 9.6e-23 109.8 75 72.0
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.3e-22 109.4 75 69.3
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.3e-22 109.4 75 72.0
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.3e-22 109.4 75 72.0
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 1.6e-22 109.0 75 72.0
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 1.6e-22 109.0 74 73.0
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 1.6e-22 109.0 75 69.3
SEGI_27011 Sequoiadendron giganteum HOM05D002560 ORTHO05D003782 1.6e-22 109.0 75 69.3
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 2.1e-22 108.6 75 70.7
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.1e-22 108.6 75 72.0
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 2.8e-22 108.2 75 70.7
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 2.8e-22 108.2 75 72.0
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.8e-22 108.2 75 70.7
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.8e-22 108.2 75 70.7
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 2.8e-22 108.2 75 70.7
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 2.8e-22 108.2 75 70.7
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 2.8e-22 108.2 75 70.7
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 3.7e-22 107.8 75 70.7
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 3.7e-22 107.8 75 70.7
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 3.7e-22 107.8 75 73.3
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 3.7e-22 107.8 75 70.7
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 4.8e-22 107.5 75 72.0
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 6.3e-22 107.1 75 68.0
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 6.3e-22 107.1 75 69.3
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 6.3e-22 107.1 73 72.6
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 6.3e-22 107.1 75 69.3
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 8.2e-22 106.7 75 69.3
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 8.2e-22 106.7 75 73.3
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 8.2e-22 106.7 75 70.7
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.1e-21 106.3 75 70.7
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 1.1e-21 106.3 75 69.3
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 1.1e-21 106.3 75 69.3
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.4e-21 105.9 75 69.3
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.4e-21 105.9 73 69.9
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 1.4e-21 105.9 75 69.3
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 1.4e-21 105.9 75 69.3
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 1.8e-21 105.5 75 69.3
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.8e-21 105.5 75 68.0
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 2.4e-21 105.1 75 72.0
Lalb_Chr01g0023601 Lupinus albus HOM05D002560 ORTHO05D003782 2.4e-21 105.1 75 66.7
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 3.1e-21 104.8 75 68.0
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 4.1e-21 104.4 74 70.3
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 5.3e-21 104.0 75 69.3
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 5.3e-21 104.0 75 69.3
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 6.9e-21 103.6 75 69.3
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 6.9e-21 103.6 75 64.0
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 6.9e-21 103.6 75 69.3
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 6.9e-21 103.6 75 68.0
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 6.9e-21 103.6 75 69.3
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 2.6e-20 101.7 76 65.8
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 2.6e-20 101.7 75 66.7
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 2.6e-20 101.7 73 71.2
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 3.4e-20 101.3 75 68.0
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 3.4e-20 101.3 75 68.0
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 3.4e-20 101.3 75 66.7
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 3.4e-20 101.3 73 67.1
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.0e-19 99.8 76 64.5
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.0e-19 99.8 97 56.7
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.0e-19 99.8 97 56.7
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.3e-19 99.4 73 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 1.7e-19 99.0 72 63.9
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.7e-19 99.0 75 62.7
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 1.7e-19 99.0 76 64.5
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 5.5e-18 94.0 75 61.3
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 7.2e-18 93.6 73 61.6
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 9.3e-18 93.2 114 48.2
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 1.2e-17 92.8 74 59.5
Oeu064890.1 Olea europaea HOM05D002560 ORTHO05D017207 6.1e-17 90.5 76 59.2
Ah.15g090290 Amaranthus hybridus HOM05D002560 ORTHO05D003782 1.0e-16 89.7 75 57.3
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.0e-16 89.7 102 49.0
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 5.1e-16 87.4 73 60.3
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 8.7e-16 86.7 74 56.8
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.9e-15 85.5 71 60.6
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 3.3e-15 84.7 44 84.1
Sopen10g027880 Solanum pennellii HOM05D002560 ORTHO05D013255 1.3e-14 82.8 66 62.1
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 2.2e-14 82.0 41 87.8
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 3.7e-14 81.3 66 57.6
Solyc10g076260.2 Solanum lycopersicum HOM05D002560 ORTHO05D003782 6.3e-14 80.5 65 61.5
Cre08.g371957 Chlamydomonas reinhardtii HOM05D002560 ORTHO05D003782 1.8e-13 79.0 72 55.6
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 4.1e-13 77.8 65 58.5
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 9.1e-13 76.6 62 58.1
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 1.3e-11 72.8 34 94.1
CBR_g54868 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-11 71.6 74 45.9
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 3.8e-11 71.2 41 75.6
Haze_21119 Corylus avellana HOM05D002560 ORTHO05D003782 3.8e-11 71.2 34 91.2
Glyma.10G121548 Glycine max HOM05D002560 ORTHO05D013255 3.8e-11 71.2 36 83.3
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 3.8e-11 71.2 34 91.2
Gohir.A10G199133 Gossypium hirsutum HOM05D002560 ORTHO05D013255 5.0e-11 70.9 35 85.7
Haze_26280 Corylus avellana HOM05D002560 ORTHO05D003782 6.5e-11 70.5 39 74.4
Lsat_1_v5_gn_2_30201 Lactuca sativa HOM05D002560 ORTHO05D013255 6.5e-11 70.5 35 85.7
Gohir.A13G130801 Gossypium hirsutum HOM05D002560 ORTHO05D013255 8.5e-11 70.1 35 82.9
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 1.1e-10 69.7 34 88.2
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.9e-10 68.9 35 82.9
Gohir.A13G144501 Gossypium hirsutum HOM05D002560 ORTHO05D013255 2.5e-10 68.6 35 82.9
Os05g0307400 Oryza sativa ssp. japonica HOM05D000611 ORTHO05D007148 3.2e-10 68.2 34 88.2
Lsat_1_v5_gn_7_100020 Lactuca sativa HOM05D002560 ORTHO05D013255 4.2e-10 67.8 34 85.3
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 4.2e-10 67.8 34 85.3
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 5.5e-10 67.4 34 88.2
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 9.4e-10 66.6 34 85.3
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 4.6e-09 64.3 34 85.3
Gohir.1Z049390 Gossypium hirsutum HOM05D002560 ORTHO05D013255 1.4e-08 62.8 29 96.6
Nitab4.5_0000355g0160 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.4e-08 62.8 32 81.2
Lsat_1_v5_gn_7_49460 Lactuca sativa HOM05D002560 ORTHO05D013255 2.3e-08 62.0 34 79.4
CSS0025386 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 3.9e-08 61.2 34 82.4
Cfa024140 Carpinus fangiana HOM05D002560 ORTHO05D003782 3.9e-08 61.2 39 64.1
BcaB08g35086 Brassica carinata HOM05D002560 ORTHO05D013255 8.2e-06 53.5 44 65.9


User provided reference genes

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