Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 2.6e-68 261.9 133 100.0
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 2.6e-68 261.9 133 100.0
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 5.8e-68 260.8 133 99.2
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 1.0e-67 260.0 133 97.7
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 4.9e-67 257.7 133 97.7
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 6.5e-67 257.3 133 97.0
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 3.9e-64 248.1 133 94.0
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 6.7e-64 247.3 133 94.0
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 4.3e-63 244.6 134 92.5
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 5.7e-63 244.2 134 92.5
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 5.7e-63 244.2 134 92.5
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 5.7e-63 244.2 134 92.5
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 7.4e-63 243.8 134 91.8
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 4.8e-62 241.1 133 89.5
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 6.3e-62 240.7 133 90.2
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 8.2e-62 240.4 133 91.0
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 1.5e-60 236.1 133 88.7
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 2.0e-60 235.7 134 90.3
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 5.0e-59 231.1 134 88.1
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.5e-55 218.8 133 79.7
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.3e-55 218.4 133 81.2
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 9.1e-53 210.3 133 77.4
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 5.9e-52 207.6 133 77.4
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.9e-52 207.6 133 78.2
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 5.9e-52 207.6 133 76.7
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.0e-51 206.8 133 76.7
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.2e-51 205.7 133 76.7
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 5.0e-51 204.5 133 76.7
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 5.0e-51 204.5 133 74.4
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 6.5e-51 204.1 133 75.2
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 6.5e-51 204.1 133 75.2
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 6.5e-51 204.1 133 75.2
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 8.5e-51 203.8 133 76.7
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 8.5e-51 203.8 133 75.2
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 8.5e-51 203.8 134 76.9
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 8.5e-51 203.8 133 75.2
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 1.1e-50 203.4 134 73.1
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.2e-50 201.8 133 74.4
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.2e-50 201.8 133 74.4
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.2e-50 201.8 133 74.4
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 5.5e-50 201.1 133 75.2
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 5.5e-50 201.1 133 74.4
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 7.2e-50 200.7 133 74.4
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.2e-50 200.7 133 73.7
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 7.2e-50 200.7 133 72.2
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 9.4e-50 200.3 133 74.4
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 9.4e-50 200.3 133 74.4
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 2.1e-49 199.1 133 71.4
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 2.7e-49 198.7 133 72.9
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 3.6e-49 198.4 133 71.4
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 4.7e-49 198.0 133 73.7
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 4.7e-49 198.0 133 71.4
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 4.7e-49 198.0 133 73.7
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 6.1e-49 197.6 133 72.2
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 6.1e-49 197.6 133 73.7
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.9e-49 197.2 133 72.2
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 1.0e-48 196.8 133 72.2
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 1.0e-48 196.8 133 71.4
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.0e-48 196.8 133 71.4
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.0e-48 196.8 133 71.4
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 1.0e-48 196.8 134 71.6
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.0e-48 196.8 133 72.9
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 1.4e-48 196.4 133 73.7
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 1.4e-48 196.4 133 73.7
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.8e-48 196.1 133 72.2
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.8e-48 196.1 134 73.1
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.8e-48 196.1 133 72.2
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.3e-48 195.7 133 71.4
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.3e-48 195.7 134 71.6
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 3.0e-48 195.3 134 72.4
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.0e-48 195.3 133 74.4
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 3.9e-48 194.9 133 72.2
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 5.1e-48 194.5 133 72.9
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 6.7e-48 194.1 133 72.2
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 6.7e-48 194.1 133 69.9
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 2.0e-47 192.6 133 68.4
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.6e-47 192.2 133 70.7
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 2.6e-47 192.2 133 69.9
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 3.3e-47 191.8 129 71.3
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.3e-47 191.8 129 71.3
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 4.4e-47 191.4 133 69.2
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 4.4e-47 191.4 134 69.4
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 4.4e-47 191.4 133 69.9
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.7e-47 191.0 129 71.3
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 5.7e-47 191.0 132 69.7
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 5.7e-47 191.0 133 69.9
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 7.4e-47 190.7 129 70.5
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.4e-47 190.7 129 72.9
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 7.4e-47 190.7 133 70.7
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 9.7e-47 190.3 133 70.7
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.7e-46 189.5 135 72.6
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 3.7e-46 188.3 133 69.9
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 4.8e-46 188.0 133 68.4
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 4.8e-46 188.0 133 66.9
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 8.2e-46 187.2 134 69.4
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 8.2e-46 187.2 133 67.7
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 8.2e-46 187.2 133 67.7
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.1e-45 186.8 134 69.4
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 1.8e-45 186.0 133 69.2
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 2.4e-45 185.7 130 70.8
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 3.1e-45 185.3 129 67.4
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 3.1e-45 185.3 133 69.2
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 4.1e-45 184.9 130 70.0
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 4.1e-45 184.9 133 67.7
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 4.1e-45 184.9 133 68.4
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 5.3e-45 184.5 133 70.7
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 7.0e-45 184.1 133 66.9
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 9.1e-45 183.7 129 68.2
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.2e-44 183.3 133 67.7
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.2e-44 183.3 133 66.2
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 1.5e-44 183.0 133 66.9
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 1.5e-44 183.0 133 66.9
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 4.5e-44 181.4 133 68.4
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 4.5e-44 181.4 133 66.2
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 5.9e-44 181.0 125 72.0
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 5.9e-44 181.0 133 66.2
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 5.9e-44 181.0 133 66.2
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 7.7e-44 180.6 133 66.9
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 1.0e-43 180.3 120 71.7
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 1.7e-43 179.5 133 66.2
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 2.2e-43 179.1 125 70.4
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.9e-43 178.7 133 63.2
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 5.0e-43 177.9 135 68.1
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 6.5e-43 177.6 133 63.9
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 6.5e-43 177.6 121 70.2
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 8.5e-43 177.2 133 63.2
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 1.1e-42 176.8 133 63.2
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 1.4e-42 176.4 148 63.5
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.9e-42 176.0 133 63.2
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 1.9e-42 176.0 133 63.2
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.9e-42 176.0 133 63.9
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 4.2e-42 174.9 129 67.4
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 4.2e-42 174.9 122 65.6
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 5.5e-42 174.5 130 66.2
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 5.5e-42 174.5 133 63.2
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 5.5e-42 174.5 133 61.7
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 3.6e-41 171.8 125 65.6
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.4e-40 169.9 125 65.6
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.4e-40 169.9 122 67.2
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 8.8e-40 167.2 137 60.6
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 2.8e-38 162.2 141 60.3
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 1.4e-37 159.8 113 65.5
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 1.6e-36 156.4 129 58.9
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 2.6e-36 155.6 142 55.6
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 1.3e-35 153.3 133 55.6
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 1.3e-35 153.3 133 56.4
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 1.9e-34 149.4 91 74.7
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 2.1e-33 146.0 103 68.9
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 2.1e-33 146.0 102 63.7
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 8.8e-32 140.6 77 87.0
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.6e-28 129.8 110 50.9
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 4.7e-25 118.2 78 67.9
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 6.8e-24 114.4 85 67.1
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 4.4e-23 111.7 80 68.8
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.6e-20 103.2 73 67.1
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 5.9e-20 101.3 78 64.1
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.7e-19 99.8 82 59.8
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.8e-17 92.4 83 56.6
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 8.9e-16 87.4 60 71.7
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 1.2e-15 87.0 56 69.6
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 1.3e-11 73.6 50 66.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 9.5e-10 67.4 95 37.9
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 2.1e-09 66.2 50 62.0
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 7.5e-07 57.8 42 61.9


User provided reference genes

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