Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08079 Brassica carinata HOM05D006735 ORTHO05D009558 2.3e-66 255.4 122 100.0
BcaC04g18966 Brassica carinata HOM05D006735 ORTHO05D009558 8.9e-55 216.9 105 98.1
C07p10210 Brassica napus HOM05D006735 ORTHO05D009558 4.7e-40 167.9 105 76.2
BolC3t19829H Brassica oleracea HOM05D006735 ORTHO05D009558 1.8e-39 166.0 105 75.2
BolC7t41471H Brassica oleracea HOM05D006735 ORTHO05D009558 2.3e-39 165.6 105 75.2
C07p37620 Brassica napus HOM05D006735 ORTHO05D010262 5.2e-39 164.5 105 74.3
C06p27010 Brassica napus HOM05D006735 ORTHO05D009558 5.8e-38 161.0 102 75.5
C08p03780 Brassica napus HOM05D006735 ORTHO05D009558 1.7e-37 159.5 105 73.3
BolC2t07759H Brassica oleracea HOM05D006735 ORTHO05D009558 1.9e-33 146.0 103 65.0
BcaC01g02992 Brassica carinata HOM05D006735 ORTHO05D009558 3.9e-26 121.7 72 79.2
BraA05t22472Z Brassica rapa HOM05D006735 ORTHO05D009558 3.3e-25 118.6 85 68.2
BolC4t22522H Brassica oleracea HOM05D006735 ORTHO05D009558 2.1e-24 115.9 72 76.4
BolC8t49602H Brassica oleracea HOM05D006735 ORTHO05D009558 1.8e-23 112.8 72 75.0
BraA10t42960Z Brassica rapa HOM05D006735 ORTHO05D009558 2.4e-23 112.5 72 73.6
BolC8t50679H Brassica oleracea HOM05D006735 ORTHO05D009558 4.9e-21 104.8 72 68.1
BolC5t31791H Brassica oleracea HOM05D006735 ORTHO05D009558 2.4e-20 102.4 98 51.0
C05p42930 Brassica napus HOM05D006735 ORTHO05D009558 4.2e-20 101.7 109 49.5
A05p40380 Brassica napus HOM05D006735 ORTHO05D009558 5.4e-20 101.3 102 49.0
BraA09t36761Z Brassica rapa HOM05D006735 ORTHO05D009558 7.1e-20 100.9 100 50.0
A07p01920 Brassica napus HOM05D006735 ORTHO05D009558 3.5e-19 98.6 100 51.0
BraA02t07687Z Brassica rapa HOM05D006735 ORTHO05D009558 3.5e-19 98.6 96 51.0
BraA10t43706Z Brassica rapa HOM05D006735 ORTHO05D009558 4.6e-19 98.2 96 50.0
BolC5t33020H Brassica oleracea HOM05D006735 ORTHO05D009558 7.9e-19 97.4 102 50.0
BcaB04g16973 Brassica carinata HOM05D006735 ORTHO05D009558 2.8e-16 89.0 82 53.7
C03p83880 Brassica napus HOM05D006735 ORTHO05D009558 3.6e-16 88.6 65 61.5
A08p25200 Brassica napus HOM05D006735 ORTHO05D009558 7.6e-14 80.9 99 43.4
A09p42550 Brassica napus HOM05D006735 ORTHO05D009558 7.6e-14 80.9 96 43.8
BcaC03g15864 Brassica carinata HOM05D006735 ORTHO05D009558 1.7e-13 79.7 96 43.8
BcaC07g38146 Brassica carinata HOM05D006735 ORTHO05D009558 1.7e-13 79.7 101 41.6
BcaC08g45821 Brassica carinata HOM05D006735 ORTHO05D009558 1.7e-13 79.7 96 43.8
A01p26730 Brassica napus HOM05D006735 ORTHO05D009558 1.7e-13 79.7 96 43.8
C01p49020 Brassica napus HOM05D006735 ORTHO05D009558 1.7e-13 79.7 96 43.8
BcaC09g48693 Brassica carinata HOM05D006735 ORTHO05D009558 2.2e-13 79.3 104 43.3
BcaC09g51945 Brassica carinata HOM05D006735 ORTHO05D009558 2.2e-13 79.3 96 43.8
BolC2t09633H Brassica oleracea HOM05D006735 ORTHO05D009558 2.2e-13 79.3 99 43.4
BcaC04g20691 Brassica carinata HOM05D006735 ORTHO05D009558 2.9e-13 79.0 101 41.6
C05p19810 Brassica napus HOM05D006735 ORTHO05D009558 6.4e-13 77.8 99 42.4
BcaC01g03559 Brassica carinata HOM05D006735 ORTHO05D009558 8.4e-13 77.4 96 41.7
BcaC03g17723 Brassica carinata HOM05D006735 ORTHO05D009558 2.4e-12 75.9 54 66.7
BcaC09g51566 Brassica carinata HOM05D006735 ORTHO05D009558 2.4e-12 75.9 96 41.7
BcaB01g02897 Brassica carinata HOM05D006735 ORTHO05D009558 3.2e-12 75.5 96 39.6
BcaC01g02745 Brassica carinata HOM05D006735 ORTHO05D009558 5.4e-12 74.7 95 41.1
BcaC03g18043 Brassica carinata HOM05D006735 ORTHO05D009558 5.4e-12 74.7 95 40.0
C03p60980 Brassica napus HOM05D006735 ORTHO05D009558 5.4e-12 74.7 95 41.1
C08p11240 Brassica napus HOM05D006735 ORTHO05D009558 9.3e-12 73.9 96 42.7
BcaC01g00870 Brassica carinata HOM05D006735 ORTHO05D009558 3.5e-11 72.0 101 38.6
A07p02010 Brassica napus HOM05D006735 ORTHO05D009558 1.0e-10 70.5 95 37.9
BolC9t55302H Brassica oleracea HOM05D006735 ORTHO05D009558 1.8e-10 69.7 70 51.4
BolC2t07818H Brassica oleracea HOM05D006735 ORTHO05D009558 3.9e-10 68.6 95 37.9
BcaC01g02272 Brassica carinata HOM05D006735 ORTHO05D009558 5.1e-10 68.2 98 36.7
Ah.08g220620 Amaranthus hybridus HOM05D000876 ORTHO05D000285 2.5e-09 65.9 118 30.5
BcaC08g43985 Brassica carinata HOM05D006735 ORTHO05D009558 1.6e-08 63.2 83 39.8
BolC9t53784H Brassica oleracea HOM05D010326 ORTHO05D012728 1.6e-08 63.2 101 32.7
C07p50820 Brassica napus HOM05D010326 ORTHO05D012728 2.1e-08 62.8 101 32.7
Gorai.012G085300 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.7e-08 62.0 103 36.9
Gorai.004G102900 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.8e-08 61.6 117 34.2
BolC3t17400H Brassica oleracea HOM05D006735 ORTHO05D009558 6.2e-08 61.2 93 38.7
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 1.8e-07 59.7 121 28.9
BolC3t18997H Brassica oleracea HOM05D006735 ORTHO05D009558 3.1e-07 58.9 95 36.8
Gorai.008G062400 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.1e-07 58.9 117 32.5
Gorai.008G247700 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.1e-07 58.9 103 35.9
C04p61000 Brassica napus HOM05D006735 ORTHO05D009558 4.0e-07 58.5 70 41.4
Gohir.D08G116700 Gossypium hirsutum HOM05D000876 ORTHO05D000285 4.0e-07 58.5 117 31.6
Gorai.011G123600 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.0e-07 58.5 117 32.5
Gorai.005G209400 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.3e-07 58.2 114 32.5
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 6.9e-07 57.8 106 30.2
CARHR286360 Cardamine hirsuta HOM05D006735 ORTHO05D009558 9.0e-07 57.4 41 61.0
Gorai.003G031500 Gossypium raimondii HOM05D000876 ORTHO05D000285 9.0e-07 57.4 114 31.6
Gorai.006G019900 Gossypium raimondii HOM05D000876 ORTHO05D000285 9.0e-07 57.4 117 32.5
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 1.5e-06 56.6 119 28.6
C09p40570 Brassica napus HOM05D006735 ORTHO05D009558 2.0e-06 56.2 70 41.4
CAN.G462.3 Capsicum annuum HOM05D000876 ORTHO05D000285 2.0e-06 56.2 105 32.4
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 2.6e-06 55.8 121 28.1
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 2.6e-06 55.8 121 28.1
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.6e-06 55.8 121 28.1
C04p14090 Brassica napus HOM05D006735 ORTHO05D041910 3.4e-06 55.5 83 38.6
C09p40840 Brassica napus HOM05D006735 ORTHO05D009558 4.5e-06 55.1 70 41.4
Gorai.N003000 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.8e-06 54.7 103 33.0
Gorai.N004200 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.8e-06 54.7 103 33.0
Os12g0207200 Oryza sativa ssp. japonica HOM05D000876 ORTHO05D000285 7.6e-06 54.3 101 30.7
Gorai.011G122600 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.0e-05 53.9 103 33.0


User provided reference genes

Program Settings