Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 2.1e-197 692.2 350 100.0
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 2.2e-167 592.4 370 87.0
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 3.2e-166 588.6 312 96.8
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 8.8e-156 553.9 356 82.9
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 2.5e-150 535.8 366 80.9
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 1.9e-126 456.4 351 72.4
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-125 453.8 365 70.1
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 2.5e-118 429.5 373 66.5
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 5.8e-115 418.3 351 68.7
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 2.3e-111 406.4 363 66.1
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.5e-110 403.7 386 63.7
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 3.0e-87 326.2 177 88.7
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 6.9e-76 288.5 176 81.2
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 9.0e-76 288.1 178 79.2
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 3.4e-75 286.2 174 79.3
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.9e-74 283.1 175 78.9
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.1e-73 281.2 176 79.5
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 1.4e-73 280.8 176 79.0
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 6.7e-71 271.9 176 77.8
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 6.7e-63 245.4 177 65.0
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.3e-61 241.1 175 64.0
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.6e-61 240.7 176 64.8
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 8.2e-61 238.4 177 65.0
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 8.2e-61 238.4 177 63.8
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.1e-60 238.0 179 64.2
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 3.1e-60 236.5 175 62.3
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 4.1e-60 236.1 177 63.8
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 6.9e-60 235.3 177 62.7
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 6.9e-60 235.3 179 63.1
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 2.6e-59 233.4 180 60.6
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 2.6e-59 233.4 172 64.0
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 3.4e-59 233.0 180 62.8
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 3.4e-59 233.0 177 62.7
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 3.4e-59 233.0 177 62.7
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 3.4e-59 233.0 170 62.9
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 4.5e-59 232.6 171 64.9
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 7.7e-59 231.9 178 62.4
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 1.0e-58 231.5 170 64.1
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.7e-58 230.7 175 61.7
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.7e-58 230.7 175 62.3
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 2.2e-58 230.3 171 63.2
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 2.9e-58 229.9 180 60.0
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 5.0e-58 229.2 172 60.5
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.1e-57 228.0 174 58.6
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.4e-57 227.6 173 62.4
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 1.4e-57 227.6 172 62.2
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 2.5e-57 226.9 175 61.1
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 3.2e-57 226.5 184 59.2
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 4.2e-57 226.1 172 61.6
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 5.5e-57 225.7 173 64.7
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 9.4e-57 224.9 179 61.5
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 9.4e-57 224.9 172 61.6
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 9.4e-57 224.9 172 62.2
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.6e-56 224.2 173 61.3
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.6e-56 224.2 172 61.6
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.1e-56 223.8 175 61.7
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 2.1e-56 223.8 175 61.1
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 2.1e-56 223.8 173 61.3
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 2.7e-56 223.4 179 60.9
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 7.9e-56 221.9 173 61.3
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 1.4e-55 221.1 168 60.7
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.3e-55 220.3 175 60.6
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.1e-55 219.2 173 60.7
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 5.1e-55 219.2 173 60.7
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 5.1e-55 219.2 179 59.8
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 6.7e-55 218.8 171 60.8
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 6.7e-55 218.8 172 61.6
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 6.7e-55 218.8 173 60.1
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 8.8e-55 218.4 173 60.7
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 1.5e-54 217.6 171 59.6
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.0e-54 217.2 170 59.4
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.5e-54 216.9 175 60.6
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 4.3e-54 216.1 178 58.4
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 4.3e-54 216.1 178 58.4
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 5.7e-54 215.7 169 59.2
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 7.4e-54 215.3 176 60.2
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 7.4e-54 215.3 173 60.1
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 7.4e-54 215.3 170 61.2
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 9.7e-54 214.9 173 59.0
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.3e-53 214.5 173 58.4
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.7e-53 214.2 175 59.4
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 2.8e-53 213.4 178 59.0
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 2.8e-53 213.4 169 58.6
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 3.7e-53 213.0 169 55.0
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 4.8e-53 212.6 175 59.4
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 4.8e-53 212.6 169 60.9
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 1.1e-52 211.5 173 59.0
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 2.4e-52 210.3 170 55.9
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.4e-52 210.3 173 56.1
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.1e-52 209.9 170 60.6
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 3.1e-52 209.9 173 56.6
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 5.3e-52 209.1 173 56.1
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 1.5e-51 207.6 170 56.5
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.5e-51 206.1 144 67.4
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.2e-50 203.8 118 83.1
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 2.9e-50 203.4 170 57.1
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 5.0e-50 202.6 164 59.8
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 2.5e-49 200.3 172 54.1
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 1.4e-47 194.5 157 57.3
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 7.4e-46 188.7 133 82.0
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.2e-45 187.2 148 59.5
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 2.0e-43 180.6 163 53.4
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.5e-43 179.9 148 56.8
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 5.9e-43 179.1 150 55.3
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 5.0e-42 176.0 139 71.9
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 6.5e-42 175.6 171 48.5
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 1.4e-41 174.5 133 77.4
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 3.2e-41 173.3 150 57.3
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 2.7e-40 170.2 134 76.9
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 2.7e-40 170.2 177 49.2
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.7e-40 169.5 146 57.5
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 3.0e-39 166.8 176 46.0
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.1e-38 164.9 172 44.8
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 2.8e-37 160.2 133 72.9
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 1.2e-35 154.8 132 67.4
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 2.6e-35 153.7 133 66.2
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 1.7e-34 151.0 112 75.0
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.7e-34 151.0 139 57.6
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 2.9e-34 150.2 176 42.0
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 3.8e-34 149.8 130 66.2
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 1.2e-32 144.8 131 69.5
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 4.7e-32 142.9 169 40.8
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 6.1e-32 142.5 134 63.4
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 1.4e-31 141.4 132 62.9
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 3.0e-31 140.2 129 66.7
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 4.0e-31 139.8 136 59.6
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 4.0e-31 139.8 133 62.4
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 2.0e-30 137.5 133 62.4
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 4.4e-30 136.3 130 61.5
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 4.4e-30 136.3 130 61.5
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 7.5e-30 135.6 132 61.4
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 9.7e-30 135.2 132 62.1
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 3.1e-28 130.2 133 59.4
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 3.1e-28 130.2 133 59.4
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 1.0e-26 125.2 131 58.8
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.0e-23 113.6 128 49.2
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.3e-18 98.2 57 75.4
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 8.6e-18 95.5 159 37.1
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 8.9e-15 85.5 185 30.8
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 1.5e-14 84.7 72 59.7
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 3.5e-11 73.6 156 34.6
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 1.7e-10 71.2 120 41.7
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 3.9e-10 70.1 113 41.6
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 1.1e-09 68.6 96 46.9
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.5e-09 68.2 94 41.5
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 8.0e-08 62.4 121 42.1
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 8.0e-08 62.4 99 42.4
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 3.1e-07 60.5 111 40.5
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 5.2e-07 59.7 150 36.7
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.0e-06 57.8 134 37.3
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 7.5e-06 55.8 96 42.7
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 9.8e-06 55.5 88 43.2
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 9.8e-06 55.5 153 30.1


User provided reference genes

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