Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08056 Brassica carinata HOM05D006841 ORTHO05D008607 2.5e-278 961.4 482 100.0
C04p58980 Brassica napus HOM05D006841 ORTHO05D008607 1.2e-272 942.6 504 95.4
BolC4t27410H Brassica oleracea HOM05D006841 ORTHO05D008607 4.2e-265 917.5 505 93.1
BraA04t17817Z Brassica rapa HOM05D006841 ORTHO05D008607 4.6e-256 887.5 509 89.2
A04p22780 Brassica napus HOM05D006841 ORTHO05D008607 1.0e-255 886.3 507 89.3
Sp4g12660 Schrenkiella parvula HOM05D006841 ORTHO05D008607 3.1e-228 795.0 505 81.6
Thhalv10016546m.g Eutrema salsugineum HOM05D006841 ORTHO05D008607 2.6e-227 792.0 511 80.8
CARHR123400 Cardamine hirsuta HOM05D006841 ORTHO05D008607 1.6e-224 782.7 503 78.5
AT2G30100 Arabidopsis thaliana HOM05D006841 ORTHO05D008607 6.1e-224 780.8 504 79.2
AL4G24870 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 3.3e-222 775.0 510 78.6
Carub.0004s1120 Capsella rubella HOM05D006841 ORTHO05D008607 6.3e-213 744.2 424 86.1
Aa31LG5G6580 Aethionema arabicum HOM05D006841 ORTHO05D008607 3.1e-212 741.9 510 74.9
THA.LOC104800754 Tarenaya hassleriana HOM05D006841 ORTHO05D008607 5.0e-202 708.0 507 72.4
Atru.chr3.4145 Acer truncatum HOM05D006841 ORTHO05D008607 1.2e-171 607.1 504 61.7
COL.COLO4_11072 Corchorus olitorius HOM05D006841 ORTHO05D008607 1.1e-167 594.0 445 66.5
Duzib170G1072 Durio zibethinus HOM05D006841 ORTHO05D008607 2.4e-167 592.8 473 63.2
Thecc.09G353800 Theobroma cacao HOM05D006841 ORTHO05D008607 5.2e-167 591.7 443 66.4
Ciclev10028251m.g Citrus clementina HOM05D006841 ORTHO05D008607 4.9e-165 585.1 482 62.9
AL59U10050 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 6.4e-165 584.7 449 70.6
Prupe.6G052600 Prunus persica HOM05D006841 ORTHO05D008607 1.9e-164 583.2 502 60.4
Potri.009G075200 Populus trichocarpa HOM05D006841 ORTHO05D008607 7.1e-164 581.3 506 59.9
Duzib168G0722 Durio zibethinus HOM05D006841 ORTHO05D008607 3.5e-163 578.9 506 59.9
QL01p039597 Quercus lobata HOM05D006841 ORTHO05D008607 7.8e-163 577.8 480 61.5
TAR369G0096 Trochodendron aralioides HOM05D006841 ORTHO05D008607 7.8e-163 577.8 503 60.0
CSS0042618 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 1.0e-162 577.4 508 58.3
Sabra09G0057100 Salix brachista HOM05D006841 ORTHO05D008607 1.7e-162 576.6 505 59.6
CiPaw.14G056400 Carya illinoinensis HOM05D006841 ORTHO05D008607 3.0e-162 575.9 449 63.9
Phvul.006G071400 Phaseolus vulgaris HOM05D006841 ORTHO05D008607 3.0e-162 575.9 512 58.0
arahy.Tifrunner.gnm1.ann1.1QT3IR Arachis hypogaea HOM05D006841 ORTHO05D008607 3.9e-162 575.5 445 63.6
Gorai.009G112400 Gossypium raimondii HOM05D006841 ORTHO05D008607 3.9e-162 575.5 503 59.6
Glyma.11G167300 Glycine max HOM05D006841 ORTHO05D008607 5.1e-162 575.1 512 58.2
CANSAT54G0320 Cannabis sativa HOM05D006841 ORTHO05D008607 1.5e-161 573.5 458 62.4
arahy.Tifrunner.gnm1.ann1.UR06JS Arachis hypogaea HOM05D006841 ORTHO05D008607 2.5e-161 572.8 445 62.9
Glyma.18G059800 Glycine max HOM05D006841 ORTHO05D008607 2.5e-161 572.8 510 58.0
CiPaw.13G073200 Carya illinoinensis HOM05D006841 ORTHO05D008607 3.3e-161 572.4 512 59.0
Gohir.A05G108000 Gossypium hirsutum HOM05D006841 ORTHO05D008607 7.3e-161 571.2 504 59.1
Psat5g157440 Pisum sativum HOM05D006841 ORTHO05D008607 7.3e-161 571.2 499 58.1
ClCG02G019390 Citrullus lanatus HOM05D006841 ORTHO05D008607 9.6e-161 570.9 466 61.6
Manes.02G217600 Manihot esculenta HOM05D006841 ORTHO05D008607 2.8e-160 569.3 445 63.1
TPR.G32925 Trifolium pratense HOM05D006841 ORTHO05D008607 3.6e-160 568.9 506 57.7
Gohir.D05G108200 Gossypium hirsutum HOM05D006841 ORTHO05D008607 4.7e-160 568.5 503 58.8
Lalb_Chr18g0051231 Lupinus albus HOM05D006841 ORTHO05D008607 6.2e-160 568.2 443 63.4
MD03G1062600 Malus domestica HOM05D006841 ORTHO05D008607 1.4e-159 567.0 422 65.4
PGR102G0989 Punica granatum HOM05D006841 ORTHO05D008607 1.8e-159 566.6 450 62.4
CsaV3_6G016010 Cucumis sativus L. HOM05D006841 ORTHO05D008607 5.3e-159 565.1 501 59.3
RcHm_v2.0_Chr5g0070721 Rosa chinensis HOM05D006841 ORTHO05D008607 5.3e-159 565.1 444 63.3
TWI79G1747 Tripterygium wilfordii HOM05D006841 ORTHO05D008607 9.0e-159 564.3 465 61.7
Lj6g0024894 Lotus japonicus HOM05D006841 ORTHO05D008607 1.5e-158 563.5 501 58.1
TAR636G1839 Trochodendron aralioides HOM05D006841 ORTHO05D008607 1.5e-158 563.5 450 62.2
Sc06g0008150 Simmondsia chinensis HOM05D006841 ORTHO05D008607 2.0e-158 563.1 506 59.5
Haze_24381 Corylus avellana HOM05D006841 ORTHO05D008607 2.6e-158 562.8 472 61.9
Dinv28672 Davidia involucrata HOM05D006841 ORTHO05D008607 3.4e-158 562.4 484 59.7
FvH4_3g39290 Fragaria vesca HOM05D006841 ORTHO05D008607 4.4e-158 562.0 451 61.6
MELO3C026835.2 Cucumis melo HOM05D006841 ORTHO05D008607 7.6e-158 561.2 501 58.9
FAN11G0941 Fragaria x ananassa HOM05D006841 ORTHO05D008607 9.9e-158 560.8 451 61.4
vmacro14612 Vaccinium macrocarpon HOM05D006841 ORTHO05D008607 1.7e-157 560.1 509 57.2
EL10Ac7g15887 Beta vulgaris HOM05D006841 ORTHO05D008607 2.2e-157 559.7 451 62.1
SalBow2G2391 Salvia bowleyana HOM05D006841 ORTHO05D008607 2.9e-157 559.3 476 59.7
Eucgr.B02230 Eucalyptus grandis HOM05D006841 ORTHO05D008607 4.9e-157 558.5 421 64.4
Medtr3g465390 Medicago truncatula HOM05D006841 ORTHO05D008607 8.4e-157 557.8 506 56.3
Sed0019546 Sechium edule HOM05D006841 ORTHO05D008607 8.4e-157 557.8 480 59.0
AUR62009700 Chenopodium quinoa HOM05D006841 ORTHO05D008607 1.1e-156 557.4 451 62.1
Sopen05g006930 Solanum pennellii HOM05D006841 ORTHO05D008607 1.1e-156 557.4 420 64.0
FAN21G2904 Fragaria x ananassa HOM05D006841 ORTHO05D008607 1.4e-156 557.0 451 61.2
FAN25G3694 Fragaria x ananassa HOM05D006841 ORTHO05D008607 1.4e-156 557.0 451 61.0
Solyc05g012140.3 Solanum lycopersicum HOM05D006841 ORTHO05D008607 1.4e-156 557.0 420 64.0
MD11G1066200 Malus domestica HOM05D006841 ORTHO05D008607 2.4e-156 556.2 422 64.0
Aqoxy1G01268 Aquilegia oxysepala HOM05D006841 ORTHO05D008607 5.4e-156 555.1 425 64.2
MSTRG.12683 Avicennia marina HOM05D006841 ORTHO05D008607 5.4e-156 555.1 422 65.2
Rhsim01G0239400 Rhododendron simsii HOM05D006841 ORTHO05D008607 1.2e-155 553.9 506 56.9
AUR62036246 Chenopodium quinoa HOM05D006841 ORTHO05D008607 1.6e-155 553.5 448 62.1
Actinidia34467 Actinidia chinensis HOM05D006841 ORTHO05D008607 2.1e-155 553.1 458 59.6
CSS0014141 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 2.1e-155 553.1 497 56.7
HanXRQChr01g0011601 Helianthus annuus HOM05D006841 ORTHO05D008607 2.7e-155 552.7 455 59.6
Peaxi162Scf01324g00238 Petunia axillaris HOM05D006841 ORTHO05D008607 1.3e-154 550.4 480 57.9
PGSC0003DMG401028313 Solanum tuberosum HOM05D006841 ORTHO05D008607 2.3e-154 549.7 420 63.6
Migut.N00773 Erythranthe guttata HOM05D006841 ORTHO05D008607 6.6e-154 548.1 421 64.4
Ah.15g096690 Amaranthus hybridus HOM05D006841 ORTHO05D008607 7.3e-153 544.7 473 58.4
Oeu018490.1 Olea europaea HOM05D006841 ORTHO05D008607 1.1e-151 540.8 450 59.3
PSO017G2874 Papaver somniferum HOM05D006841 ORTHO05D008607 1.1e-151 540.8 422 62.8
CAN.G707.10 Capsicum annuum HOM05D006841 ORTHO05D008607 1.4e-151 540.4 424 61.6
Ah.08g215320 Amaranthus hybridus HOM05D006841 ORTHO05D008607 1.8e-151 540.0 422 61.4
Hund05042 Selenicereus undatus HOM05D006841 ORTHO05D008607 3.1e-151 539.3 451 59.9
PSO349G0316 Papaver somniferum HOM05D006841 ORTHO05D008607 9.0e-151 537.7 423 62.9
MBI15_g21765_MAGBIO Magnolia biondii HOM05D006841 ORTHO05D008607 4.9e-149 531.9 500 55.6
VMungo0540G0160 Vigna mungo HOM05D006841 ORTHO05D008607 9.3e-148 527.7 421 62.2
SGA_v2.0_scaffold104G30129 Striga asiatica HOM05D006841 ORTHO05D008607 1.2e-147 527.3 477 58.1
unitig_94.g28363 Utricularia gibba HOM05D006841 ORTHO05D008607 6.2e-144 515.0 420 60.0
Lj2A1088G41 Lonicera japonica HOM05D006841 ORTHO05D008607 1.2e-142 510.8 454 58.4
Ca_14982_v3 Cicer arietinum L. HOM05D006841 ORTHO05D008607 3.4e-142 509.2 390 63.8
Lsat_1_v5_gn_5_173260 Lactuca sativa HOM05D006841 ORTHO05D008607 2.5e-140 503.1 426 58.9
CDE06G2104 Ceratophyllum demersum HOM05D006841 ORTHO05D008607 6.0e-139 498.4 504 52.8
ECA248G2088 Erigeron canadensis HOM05D006841 ORTHO05D008607 1.1e-137 494.2 400 59.8
Cc01_g14600 Coffea canephora HOM05D006841 ORTHO05D008607 4.3e-129 465.7 399 57.4
Os05g0353300 Oryza sativa ssp. japonica HOM05D006841 ORTHO05D008607 2.9e-125 453.0 431 53.4
GSVIVG01024686001 Vitis vinifera HOM05D006841 ORTHO05D008607 1.4e-124 450.7 382 59.7
Zm00001eb286480 Zea mays HOM05D006841 ORTHO05D008607 1.9e-124 450.3 422 52.8
ATR0174G035 Amborella trichopoda HOM05D006841 ORTHO05D008607 1.6e-123 447.2 418 53.3
DCAR_007349 Daucus carota HOM05D006841 ORTHO05D008607 8.8e-122 441.4 355 59.2
SEGI_38470 Sequoiadendron giganteum HOM05D006841 ORTHO05D008607 5.3e-103 379.0 461 42.3
HPP92_025104 Vanilla planifolia HOM05D006841 ORTHO05D008607 1.6e-102 377.5 351 55.3
Actinidia23875 Actinidia chinensis HOM05D006841 ORTHO05D008607 4.2e-92 342.8 288 61.1
Hma1.2p1_0146F.1_g065520 Hydrangea macrophylla HOM05D006841 ORTHO05D008607 1.8e-87 327.4 259 57.9
Mapoly0068s0098 Marchantia polymorpha HOM05D006841 ORTHO05D008607 3.8e-85 319.7 417 41.2
CSS0012316 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 3.5e-70 270.0 421 41.1
Pp3c12_8330 Physcomitrium patens HOM05D006841 ORTHO05D008607 5.4e-63 246.1 419 34.8
SMO304G0125 Selaginella moellendorffii HOM05D006841 ORTHO05D008607 5.4e-63 246.1 418 34.2
Nn2g10947 Nelumbo nucifera HOM05D006841 ORTHO05D008607 3.5e-62 243.4 184 66.8
Nn2g13216 Nelumbo nucifera HOM05D006841 ORTHO05D008607 1.2e-59 235.0 201 63.2
Cpa.g.sc2.394 Carica papaya HOM05D006841 ORTHO05D008607 1.7e-56 224.6 150 74.0
MD11G1194000 Malus domestica HOM05D006841 ORTHO05D008607 6.0e-54 216.1 152 71.1
Oeu034210.1 Olea europaea HOM05D009051 ORTHO05D000140 7.6e-41 172.6 178 46.1
AagrBONN_evm.TU.Sc2ySwM_117.787 Anthoceros agrestis HOM05D006841 ORTHO05D008607 9.0e-34 149.1 219 39.3
Oeu034514.1 Olea europaea HOM05D006841 ORTHO05D008607 7.4e-28 129.4 126 54.8
Oeu034518.1 Olea europaea HOM05D006841 ORTHO05D008607 1.8e-26 124.8 125 54.4
Oeu034517.1 Olea europaea HOM05D006841 ORTHO05D008607 3.4e-25 120.6 230 34.3
Oeu034513.1 Olea europaea HOM05D006841 ORTHO05D008607 1.9e-23 114.8 230 32.2
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 3.2e-23 114.0 92 62.0
C02p15210 Brassica napus HOM05D018598 ORTHO05D103804 6.7e-13 79.7 40 95.0
C01p38520 Brassica napus HOM05D018598 ORTHO05D098635 5.7e-12 76.6 40 92.5
C02p38610 Brassica napus HOM05D018598 ORTHO05D097828 5.7e-12 76.6 40 92.5
C04p14220 Brassica napus HOM05D018598 ORTHO05D101392 5.7e-12 76.6 40 92.5
C05p40560 Brassica napus HOM05D018598 ORTHO05D096464 5.7e-12 76.6 40 92.5
BolC5t30236H Brassica oleracea HOM05D018598 ORTHO05D042499 5.7e-12 76.6 40 92.5
C05p46340 Brassica napus HOM05D018598 ORTHO05D042499 2.8e-11 74.3 40 90.0
Oeu019495.1 Olea europaea HOM05D006841 ORTHO05D008607 5.0e-08 63.5 145 29.7


User provided reference genes

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