Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08023 Brassica carinata HOM05D002122 ORTHO05D002205 2.3e-128 462.2 228 100.0
C04p59310 Brassica napus HOM05D002122 ORTHO05D002205 4.5e-52 208.8 196 61.7
BolC4t27438H Brassica oleracea HOM05D002122 ORTHO05D002205 4.5e-52 208.8 196 61.7
BraA04t17843Z Brassica rapa HOM05D002122 ORTHO05D002205 2.0e-47 193.4 196 59.7
A04p23150 Brassica napus HOM05D002122 ORTHO05D002205 9.8e-47 191.0 196 58.7
Sp4g12930 Schrenkiella parvula HOM05D002122 ORTHO05D002205 1.6e-33 147.1 204 47.5
A03p16980 Brassica napus HOM05D002122 ORTHO05D002205 5.2e-32 142.1 199 48.2
Thhalv10017368m.g Eutrema salsugineum HOM05D002122 ORTHO05D002205 1.7e-30 137.1 204 45.6
AT2G30370 Arabidopsis thaliana HOM05D002122 ORTHO05D002205 1.0e-27 127.9 192 44.8
Carub.0004s1152 Capsella rubella HOM05D002122 ORTHO05D002205 2.3e-24 116.7 214 41.1
BolC3t14379H Brassica oleracea HOM05D002122 ORTHO05D002205 1.9e-21 107.1 169 44.4
C03p20020 Brassica napus HOM05D002122 ORTHO05D002205 1.3e-19 100.9 163 43.6
CARHR123720 Cardamine hirsuta HOM05D002122 ORTHO05D002205 2.3e-19 100.1 203 40.4
BcaB06g28363 Brassica carinata HOM05D002122 ORTHO05D002205 4.4e-15 85.9 43 90.7
BcaC01g05992 Brassica carinata HOM05D002122 ORTHO05D002205 5.6e-10 68.9 72 52.8
BcaB01g04110 Brassica carinata HOM05D002122 ORTHO05D002205 2.1e-09 67.0 72 50.0
Nitab4.5_0001060g0070 Nicotiana tabacum HOM05D002122 ORTHO05D002205 4.7e-09 65.9 74 48.6
Peaxi162Scf00131g00175 Petunia axillaris HOM05D002122 ORTHO05D002205 1.4e-08 64.3 37 78.4
CSS0026893 Camellia sinensis var. sinensis HOM05D002122 ORTHO05D002205 1.8e-08 63.9 115 35.7
Oeu011370.1 Olea europaea HOM05D002122 ORTHO05D002205 1.8e-08 63.9 89 41.6
MBI15_g35106_MAGBIO Magnolia biondii HOM05D002122 ORTHO05D002205 3.1e-08 63.2 35 74.3
Oeu027177.1 Olea europaea HOM05D002122 ORTHO05D002205 3.1e-08 63.2 61 54.1
QL01p025160 Quercus lobata HOM05D002122 ORTHO05D002205 4.0e-08 62.8 75 49.3
RcHm_v2.0_Chr5g0072621 Rosa chinensis HOM05D002122 ORTHO05D002205 4.0e-08 62.8 105 39.0
CSS0022565 Camellia sinensis var. sinensis HOM05D002122 ORTHO05D002205 5.2e-08 62.4 82 43.9
Cc01_g15190 Coffea canephora HOM05D002122 ORTHO05D002205 5.2e-08 62.4 62 51.6
Glyma.14G203100 Glycine max HOM05D002122 ORTHO05D002205 5.2e-08 62.4 120 36.7
Glyma.02G235200 Glycine max HOM05D002122 ORTHO05D002205 1.2e-07 61.2 90 42.2
MSTRG.18542 Avicennia marina HOM05D002122 ORTHO05D002205 1.5e-07 60.8 64 48.4
Psat2g051320 Pisum sativum HOM05D002122 ORTHO05D002205 1.5e-07 60.8 87 41.4
Nn2g10345 Nelumbo nucifera HOM05D002122 ORTHO05D002205 2.6e-07 60.1 87 43.7
SEGI_27344 Sequoiadendron giganteum HOM05D002122 ORTHO05D002205 2.6e-07 60.1 61 50.8
CSS0049422 Camellia sinensis var. sinensis HOM05D002122 ORTHO05D002205 4.4e-07 59.3 72 44.4
Dinv12268 Davidia involucrata HOM05D002122 ORTHO05D002205 4.4e-07 59.3 101 38.6
TAR633G1325 Trochodendron aralioides HOM05D002122 ORTHO05D002205 4.4e-07 59.3 59 54.2
Atru.chr1.2531 Acer truncatum HOM05D002122 ORTHO05D002205 5.8e-07 58.9 75 49.3
Dinv28720 Davidia involucrata HOM05D002122 ORTHO05D002205 5.8e-07 58.9 62 51.6
Phvul.008G248700 Phaseolus vulgaris HOM05D002122 ORTHO05D002205 5.8e-07 58.9 67 46.3
Prupe.6G043000 Prunus persica HOM05D002122 ORTHO05D002205 5.8e-07 58.9 59 54.2
THA.LOC104800783 Tarenaya hassleriana HOM05D002122 ORTHO05D002205 5.8e-07 58.9 196 31.1
ATR0739G090 Amborella trichopoda HOM05D002122 ORTHO05D002205 7.6e-07 58.5 59 52.5
Gohir.A03G023400 Gossypium hirsutum HOM05D002122 ORTHO05D002205 7.6e-07 58.5 59 50.8
Gohir.D03G145200 Gossypium hirsutum HOM05D002122 ORTHO05D002205 7.6e-07 58.5 59 50.8
Gorai.003G152400 Gossypium raimondii HOM05D002122 ORTHO05D002205 7.6e-07 58.5 59 50.8
Lalb_Chr17g0345571 Lupinus albus HOM05D002122 ORTHO05D002205 7.6e-07 58.5 60 45.0
VMungo0647G2173 Vigna mungo HOM05D002122 ORTHO05D002205 7.6e-07 58.5 66 48.5
Cpa.g.sc2.320 Carica papaya HOM05D002122 ORTHO05D002205 9.9e-07 58.2 59 50.8
CiPaw.13G065300 Carya illinoinensis HOM05D002122 ORTHO05D002205 9.9e-07 58.2 90 41.1
Ciclev10003052m.g Citrus clementina HOM05D002122 ORTHO05D002205 9.9e-07 58.2 59 50.8
TWI31G1082 Tripterygium wilfordii HOM05D002122 ORTHO05D002205 9.9e-07 58.2 65 47.7
Actinidia11614 Actinidia chinensis HOM05D002122 ORTHO05D002205 1.3e-06 57.8 81 44.4
arahy.Tifrunner.gnm1.ann1.79G9YV Arachis hypogaea HOM05D002122 ORTHO05D002205 1.3e-06 57.8 59 50.8
arahy.Tifrunner.gnm1.ann1.8J0WZK Arachis hypogaea HOM05D002122 ORTHO05D002205 1.3e-06 57.8 59 50.8
Oeu027172.1 Olea europaea HOM05D002122 ORTHO05D002205 1.3e-06 57.8 41 65.9
PGSC0003DMG400020565 Solanum tuberosum HOM05D002122 ORTHO05D002205 1.3e-06 57.8 62 50.0
CAN.G1572.6 Capsicum annuum HOM05D002122 ORTHO05D002205 1.7e-06 57.4 95 40.0
Potri.013G155500 Populus trichocarpa HOM05D002122 ORTHO05D002205 1.7e-06 57.4 59 50.8
Aqoxy4G02364 Aquilegia oxysepala HOM05D002122 ORTHO05D002205 2.2e-06 57.0 59 50.8
DCAR_027242 Daucus carota HOM05D002122 ORTHO05D002205 2.2e-06 57.0 59 52.5
FvH4_3g40280 Fragaria vesca HOM05D002122 ORTHO05D002205 2.2e-06 57.0 59 52.5
FAN11G2958 Fragaria x ananassa HOM05D002122 ORTHO05D002205 2.2e-06 57.0 59 52.5
FAN16G0200 Fragaria x ananassa HOM05D002122 ORTHO05D002205 2.2e-06 57.0 59 52.5
FAN21G3591 Fragaria x ananassa HOM05D002122 ORTHO05D002205 2.2e-06 57.0 59 52.5
FAN25G2896 Fragaria x ananassa HOM05D002122 ORTHO05D002205 2.2e-06 57.0 59 52.5
MD11G1055500 Malus domestica HOM05D002122 ORTHO05D002205 2.2e-06 57.0 28 85.7
Sabra13G0125300 Salix brachista HOM05D002122 ORTHO05D002205 2.2e-06 57.0 59 50.8
Duzib168G0418 Durio zibethinus HOM05D002122 ORTHO05D002205 2.9e-06 56.6 59 50.8
Lsat_1_v5_gn_8_108600 Lactuca sativa HOM05D002122 ORTHO05D002205 2.9e-06 56.6 28 82.1
Sopen06g002370 Solanum pennellii HOM05D002122 ORTHO05D002205 2.9e-06 56.6 59 50.8
Thecc.09G362100 Theobroma cacao HOM05D002122 ORTHO05D002205 2.9e-06 56.6 59 50.8
COL.COLO4_11194 Corchorus olitorius HOM05D002122 ORTHO05D002205 3.7e-06 56.2 59 50.8
PGR102G1597 Punica granatum HOM05D002122 ORTHO05D002205 3.7e-06 56.2 75 44.0
Rhsim13G0061100 Rhododendron simsii HOM05D002122 ORTHO05D002205 3.7e-06 56.2 39 61.5
CANSAT54G0290 Cannabis sativa HOM05D002122 ORTHO05D002205 4.9e-06 55.8 58 50.0
HanXRQChr01g0012631 Helianthus annuus HOM05D002122 ORTHO05D002205 4.9e-06 55.8 30 80.0
PGR142G0306 Punica granatum HOM05D002122 ORTHO05D002205 4.9e-06 55.8 30 73.3
CiPaw.14G051900 Carya illinoinensis HOM05D002122 ORTHO05D002205 6.4e-06 55.5 59 49.2
Sabra19G0125800 Salix brachista HOM05D000055 ORTHO05D000057 6.4e-06 55.5 28 82.1
Sc06g0008090 Simmondsia chinensis HOM05D002122 ORTHO05D002205 6.4e-06 55.5 30 66.7
HPP92_011983 Vanilla planifolia HOM05D002122 ORTHO05D002205 6.4e-06 55.5 50 56.0
Glyma.18G054500 Glycine max HOM05D002122 ORTHO05D002205 8.4e-06 55.1 29 75.9
Lalb_Chr10g0103751 Lupinus albus HOM05D002122 ORTHO05D002205 8.4e-06 55.1 84 40.5
GSVIVG01024582001 Vitis vinifera HOM05D002122 ORTHO05D002205 8.4e-06 55.1 59 50.8


User provided reference genes

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