Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 1.6e-109 399.4 197 100.0
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 4.5e-109 397.9 197 99.5
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 5.5e-107 391.0 204 96.1
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 2.8e-103 378.6 197 96.4
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 4.5e-101 371.3 204 92.2
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 9.8e-96 353.6 198 88.9
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 1.2e-90 336.7 202 84.7
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 1.9e-83 312.8 204 81.4
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 7.3e-83 310.8 203 81.3
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 2.1e-82 309.3 201 82.1
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 6.2e-82 307.8 204 78.9
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 1.8e-81 306.2 205 79.0
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 2.6e-80 302.4 203 79.8
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 7.5e-80 300.8 204 78.4
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 4.1e-78 295.0 205 77.1
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 1.2e-77 293.5 205 77.1
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 2.7e-77 292.4 205 76.6
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 1.3e-76 290.0 213 75.6
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 6.6e-76 287.7 203 76.4
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 2.4e-65 252.7 211 67.3
CARHR123780 Cardamine hirsuta HOM05D005957 ORTHO05D007318 1.2e-53 213.8 166 73.5
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 2.5e-43 179.5 203 57.1
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 2.0e-32 143.3 196 50.5
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 2.9e-31 139.4 197 43.7
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 2.9e-31 139.4 191 48.2
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 3.8e-31 139.0 199 42.2
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 1.9e-30 136.7 199 42.2
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 4.2e-30 135.6 197 43.1
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 7.2e-30 134.8 199 42.2
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 9.4e-30 134.4 199 41.7
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 1.6e-29 133.7 196 45.4
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 1.6e-29 133.7 196 42.3
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 2.1e-29 133.3 195 46.2
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 4.6e-29 132.1 193 46.1
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 7.9e-29 131.3 200 43.5
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 1.0e-28 131.0 196 45.4
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 1.4e-28 130.6 195 44.6
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 1.4e-28 130.6 200 42.5
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 1.4e-28 130.6 197 45.7
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 5.1e-28 128.6 195 43.6
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 6.7e-28 128.3 197 41.1
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 6.7e-28 128.3 197 43.7
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 8.8e-28 127.9 202 41.1
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 8.8e-28 127.9 190 42.6
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 1.1e-27 127.5 198 45.5
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 1.1e-27 127.5 188 43.1
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 3.3e-27 125.9 202 39.6
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 3.3e-27 125.9 199 42.7
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 5.7e-27 125.2 196 44.9
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 7.4e-27 124.8 191 39.8
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 1.3e-26 124.0 197 41.6
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.3e-26 124.0 196 41.8
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 1.7e-26 123.6 198 43.9
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 2.2e-26 123.2 202 39.1
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 2.2e-26 123.2 202 41.1
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 2.2e-26 123.2 193 41.5
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 2.2e-26 123.2 198 41.4
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 2.2e-26 123.2 195 43.1
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 2.8e-26 122.9 183 42.1
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 6.3e-26 121.7 188 41.0
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 6.3e-26 121.7 199 38.2
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.8e-25 120.2 187 43.3
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.8e-25 120.2 199 42.2
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 2.4e-25 119.8 187 43.3
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 2.4e-25 119.8 197 43.7
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 2.4e-25 119.8 186 42.5
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 4.1e-25 119.0 188 42.0
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 5.3e-25 118.6 198 40.4
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 6.9e-25 118.2 199 39.2
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 9.1e-25 117.9 195 42.6
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 9.1e-25 117.9 198 42.9
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 9.1e-25 117.9 193 39.4
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 9.1e-25 117.9 186 40.3
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 2.6e-24 116.3 199 42.7
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 5.9e-24 115.2 188 41.0
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 7.7e-24 114.8 203 40.4
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 7.7e-24 114.8 175 42.9
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 1.0e-23 114.4 195 42.6
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.0e-23 114.4 188 39.4
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 3.8e-23 112.5 192 41.1
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 3.8e-23 112.5 189 40.2
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 1.4e-22 110.5 204 38.2
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 3.2e-22 109.4 200 39.5
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 5.5e-22 108.6 203 37.4
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 1.6e-21 107.1 196 37.2
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 1.6e-21 107.1 89 62.9
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 1.6e-21 107.1 89 62.9
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 2.1e-21 106.7 187 39.6
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 4.7e-21 105.5 99 55.6
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 4.7e-21 105.5 62 79.0
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 4.7e-21 105.5 89 58.4
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 6.1e-21 105.1 201 36.3
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 6.1e-21 105.1 201 36.3
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 6.1e-21 105.1 102 55.9
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 6.1e-21 105.1 90 61.1
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 6.1e-21 105.1 183 40.4
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 6.1e-21 105.1 86 60.5
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 2.3e-20 103.2 122 43.4
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 2.3e-20 103.2 96 58.3
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 3.0e-20 102.8 200 39.0
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 6.7e-20 101.7 88 56.8
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 8.8e-20 101.3 199 41.7
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 8.8e-20 101.3 93 55.9
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 2.6e-19 99.8 187 38.0
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 3.3e-19 99.4 88 53.4
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 4.4e-19 99.0 62 71.0
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 4.4e-19 99.0 84 59.5
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 7.4e-19 98.2 99 52.5
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 9.7e-19 97.8 192 37.5
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 6.3e-18 95.1 88 52.3
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 1.1e-17 94.4 60 70.0
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 1.4e-17 94.0 63 66.7
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 1.4e-17 94.0 89 57.3
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 1.8e-17 93.6 97 51.5
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 3.1e-17 92.8 97 51.5
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 4.1e-17 92.4 86 52.3
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 7.0e-17 91.7 99 49.5
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 9.1e-17 91.3 60 68.3
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 1.5e-16 90.5 198 35.9
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 1.5e-16 90.5 100 50.0
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 1.0e-15 87.8 85 52.9
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 1.3e-15 87.4 187 35.3
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 1.7e-15 87.0 87 50.6
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 2.2e-15 86.7 66 57.6
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 2.2e-15 86.7 66 57.6
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 4.2e-14 82.4 110 41.8
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 1.6e-13 80.5 57 68.4
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 2.1e-13 80.1 59 66.1
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 2.3e-12 76.6 58 60.3
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 2.3e-12 76.6 76 50.0
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 5.2e-12 75.5 74 48.6
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 2.6e-11 73.2 60 58.3


User provided reference genes

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