Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08016 Brassica carinata HOM05D008517 ORTHO05D010482 2.6e-170 602.1 323 100.0
C04p59390 Brassica napus HOM05D008517 ORTHO05D010482 2.6e-170 602.1 323 100.0
BolC4t27447H Brassica oleracea HOM05D008517 ORTHO05D010482 2.6e-170 602.1 323 100.0
BraA04t17851Z Brassica rapa HOM05D008517 ORTHO05D010482 7.8e-167 590.5 323 98.5
A04p23240 Brassica napus HOM05D008517 ORTHO05D010482 5.1e-166 587.8 323 97.8
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 8.4e-153 543.9 327 92.7
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 2.1e-135 486.1 309 80.6
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 6.5e-129 464.5 305 79.7
AL4G25390 Arabidopsis lyrata HOM05D008517 ORTHO05D010482 8.5e-121 437.6 323 74.3
Carub.0004s1167 Capsella rubella HOM05D008517 ORTHO05D010482 1.9e-120 436.4 325 72.0
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 4.2e-120 435.3 305 77.4
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 4.2e-120 435.3 305 77.4
AT2G30505 Arabidopsis thaliana HOM05D008517 ORTHO05D010482 2.7e-119 432.6 325 73.5
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 3.6e-119 432.2 305 76.1
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 2.0e-117 426.4 305 76.4
CARHR123960 Cardamine hirsuta HOM05D008517 ORTHO05D010482 7.4e-117 424.5 323 70.9
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 1.3e-116 423.7 305 76.1
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 1.3e-116 423.7 305 76.1
Aa31LG5G6260 Aethionema arabicum HOM05D008517 ORTHO05D010482 1.1e-75 287.7 332 54.2
THA.LOC104800796 Tarenaya hassleriana HOM05D008517 ORTHO05D010482 4.7e-47 192.6 213 48.4
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 2.1e-39 167.2 225 38.7
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 7.4e-24 115.5 159 38.4
Eucgr.J01845 Eucalyptus grandis HOM05D008517 ORTHO05D010482 6.9e-22 109.0 232 31.0
Lj6g0010191 Lotus japonicus HOM05D008517 ORTHO05D010482 3.8e-20 103.2 197 31.5
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 4.9e-20 102.8 198 30.3
Actinidia23156 Actinidia chinensis HOM05D000033 ORTHO05D000913 6.5e-20 102.4 248 27.4
Medtr3g062470 Medicago truncatula HOM05D008517 ORTHO05D010482 8.4e-20 102.1 226 31.0
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 1.1e-19 101.7 190 32.6
arahy.Tifrunner.gnm1.ann1.92WL97 Arachis hypogaea HOM05D008517 ORTHO05D010482 1.4e-19 101.3 201 32.3
Ca_15071_v3 Cicer arietinum L. HOM05D008517 ORTHO05D010482 5.5e-19 99.4 197 28.9
MD11G1051900 Malus domestica HOM05D016692 ORTHO05D010482 5.5e-19 99.4 235 28.1
PGR119G1844 Punica granatum HOM05D008517 ORTHO05D010482 5.5e-19 99.4 191 36.6
Dinv12288 Davidia involucrata HOM05D008517 ORTHO05D010482 9.3e-19 98.6 242 30.6
Lj2A1104T76 Lonicera japonica HOM05D008517 ORTHO05D010482 2.1e-18 97.4 221 29.9
TPR.G13887 Trifolium pratense HOM05D008517 ORTHO05D010482 3.5e-18 96.7 210 29.0
CSS0018299 Camellia sinensis var. sinensis HOM05D008517 ORTHO05D010482 4.6e-18 96.3 243 29.2
arahy.Tifrunner.gnm1.ann1.Q24W9G Arachis hypogaea HOM05D008517 ORTHO05D010482 1.0e-17 95.1 236 30.1
Psat5g147520 Pisum sativum HOM05D008517 ORTHO05D010482 1.0e-17 95.1 190 30.0
FAN21G3878 Fragaria x ananassa HOM05D016692 ORTHO05D010482 1.8e-17 94.4 190 30.5
MELO3C020481.2 Cucumis melo HOM05D008517 ORTHO05D010482 3.0e-17 93.6 206 29.1
Lalb_Chr15g0085691 Lupinus albus HOM05D008517 ORTHO05D010482 3.9e-17 93.2 197 29.9
Atru.chr10.2344 Acer truncatum HOM05D008517 ORTHO05D010482 6.7e-17 92.4 186 30.6
Lalb_Chr18g0054121 Lupinus albus HOM05D008517 ORTHO05D010482 6.7e-17 92.4 238 30.7
MSTRG.12716 Avicennia marina HOM05D008517 ORTHO05D010482 2.5e-16 90.5 185 30.8
Phvul.006G080100 Phaseolus vulgaris HOM05D008517 ORTHO05D010482 2.5e-16 90.5 186 32.8
RcHm_v2.0_Chr5g0073561 Rosa chinensis HOM05D016692 ORTHO05D010482 2.5e-16 90.5 190 30.0
FvH4_3g40830 Fragaria vesca HOM05D016692 ORTHO05D010482 7.4e-16 89.0 190 29.5
ClCG03G000030 Citrullus lanatus HOM05D008517 ORTHO05D010482 1.6e-15 87.8 189 30.2
FAN11G0742 Fragaria x ananassa HOM05D016692 ORTHO05D010482 2.8e-15 87.0 190 29.5
VMungo0540G2173 Vigna mungo HOM05D008517 ORTHO05D010482 2.8e-15 87.0 245 25.7
MD03G1049700 Malus domestica HOM05D016692 ORTHO05D010482 3.7e-15 86.7 234 26.5
FAN25G0531 Fragaria x ananassa HOM05D000033 ORTHO05D000913 4.8e-15 86.3 301 25.6
Glyma.18G051200 Glycine max HOM05D008517 ORTHO05D010482 4.1e-14 83.2 160 33.1
Glyma.11G199600 Glycine max HOM05D008517 ORTHO05D010482 1.3e-12 78.2 243 27.6
Sed0007690 Sechium edule HOM05D008517 ORTHO05D010482 3.8e-12 76.6 191 28.3
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.8e-09 67.8 247 25.9
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 5.1e-09 66.2 186 27.4
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 1.9e-08 64.3 161 27.3
Nn5g26812 Nelumbo nucifera HOM05D008517 ORTHO05D010482 7.4e-08 62.4 154 29.9
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 1.8e-06 57.8 156 23.7
Lsat_1_v5_gn_8_99661 Lactuca sativa HOM05D008517 ORTHO05D010482 1.8e-06 57.8 169 29.0
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 2.4e-06 57.4 147 29.9
MSTRG.25949 Avicennia marina HOM05D002137 ORTHO05D002144 3.1e-06 57.0 160 27.5
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 3.1e-06 57.0 166 29.5
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 9.1e-06 55.5 166 28.9
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 9.1e-06 55.5 166 28.9
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 9.1e-06 55.5 159 24.5
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 9.1e-06 55.5 125 32.0


User provided reference genes

Program Settings