Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08008 Brassica carinata HOM05D005207 ORTHO05D010629 1.0e-160 570.1 306 100.0
C04p59490 Brassica napus HOM05D005207 ORTHO05D010629 4.8e-158 561.2 306 99.3
A04p23300 Brassica napus HOM05D005207 ORTHO05D010629 6.3e-142 507.7 305 91.8
BcaC02g08006 Brassica carinata HOM05D005207 ORTHO05D010629 1.8e-136 489.6 307 88.3
C04p59510 Brassica napus HOM05D005207 ORTHO05D010629 1.8e-136 489.6 307 88.3
BolC4t27455H Brassica oleracea HOM05D005207 ORTHO05D010629 1.3e-134 483.4 307 87.9
BraA04t17858Z Brassica rapa HOM05D005207 ORTHO05D010629 8.0e-121 437.6 244 87.7
BcaB06g28378 Brassica carinata HOM05D005207 ORTHO05D010629 1.3e-99 367.1 277 66.8
C04p59240 Brassica napus HOM05D005207 ORTHO05D010629 7.4e-74 281.6 273 58.6
BolC4t27435H Brassica oleracea HOM05D005207 ORTHO05D010629 7.4e-74 281.6 273 58.6
A04p23290 Brassica napus HOM05D005207 ORTHO05D010629 2.6e-71 273.1 265 56.2
C04p59500 Brassica napus HOM05D005207 ORTHO05D010629 6.0e-68 261.9 260 54.6
BcaC02g08007 Brassica carinata HOM05D005207 ORTHO05D010629 8.7e-67 258.1 271 52.8
BcaC02g08009 Brassica carinata HOM05D005207 ORTHO05D010629 7.4e-66 255.0 265 53.6
C04p59480 Brassica napus HOM05D005207 ORTHO05D010629 4.8e-65 252.3 241 55.2
BcaNung01579 Brassica carinata HOM05D005207 ORTHO05D010629 5.8e-63 245.4 274 52.2
BcaC02g08027 Brassica carinata HOM05D005207 ORTHO05D010629 2.2e-57 226.9 274 51.1
A04p30470 Brassica napus HOM05D005207 ORTHO05D010629 2.2e-57 226.9 260 48.8
BraA04t18460Z Brassica rapa HOM05D005207 ORTHO05D010629 1.3e-54 217.6 240 50.0
BcaC02g07482 Brassica carinata HOM05D005207 ORTHO05D010629 1.2e-52 211.1 265 48.7
C06p50330 Brassica napus HOM05D005207 ORTHO05D010629 1.2e-52 211.1 258 51.2
C06p50420 Brassica napus HOM05D005207 ORTHO05D010629 2.1e-52 210.3 258 50.8
BolC4t27457H Brassica oleracea HOM05D005207 ORTHO05D010629 7.9e-52 208.4 201 55.7
BcaC01g05826 Brassica carinata HOM05D005207 ORTHO05D010629 3.9e-51 206.1 240 48.8
C06p50450 Brassica napus HOM05D005207 ORTHO05D010629 5.1e-51 205.7 259 50.6
BraA07t31720Z Brassica rapa HOM05D005207 ORTHO05D010629 8.8e-51 204.9 243 51.4
BcaC08g47266 Brassica carinata HOM05D005207 ORTHO05D010629 2.0e-50 203.8 258 50.4
A07p41910 Brassica napus HOM05D005207 ORTHO05D010629 2.5e-50 203.4 243 51.4
BcaB06g29180 Brassica carinata HOM05D005207 ORTHO05D010629 3.4e-47 193.0 213 51.6
C06p50380 Brassica napus HOM05D005207 ORTHO05D010629 2.9e-46 189.9 234 51.7
BcaC02g12854 Brassica carinata HOM05D005207 ORTHO05D010629 3.2e-45 186.4 243 46.5
BcaB06g28704 Brassica carinata HOM05D005207 ORTHO05D010629 4.4e-42 176.0 172 55.2
BcaB06g28876 Brassica carinata HOM05D005207 ORTHO05D010629 9.1e-40 168.3 172 52.9
BolC4t27454H Brassica oleracea HOM05D007694 ORTHO05D041000 6.5e-38 162.2 258 41.5
C04p68620 Brassica napus HOM05D005207 ORTHO05D010629 1.4e-35 154.5 243 41.6
BolC4t28368H Brassica oleracea HOM05D005207 ORTHO05D010629 1.4e-35 154.5 243 41.6
BcaB06g28377 Brassica carinata HOM05D005207 ORTHO05D010629 6.3e-33 145.6 139 56.1
C04p66560 Brassica napus HOM05D005207 ORTHO05D041593 1.1e-29 134.8 116 60.3
BolC4t28158H Brassica oleracea HOM05D005207 ORTHO05D041593 1.1e-29 134.8 116 60.3
BolC6t40070H Brassica oleracea HOM05D005207 ORTHO05D010629 1.1e-24 118.2 228 37.3
BcaC08g47263 Brassica carinata HOM05D005207 ORTHO05D010629 2.7e-23 113.6 153 49.7
AL6G12890 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.0e-19 101.7 192 38.0
A09p43740 Brassica napus HOM05D005207 ORTHO05D010629 1.8e-19 100.9 136 45.6
A03p02860 Brassica napus HOM05D005207 ORTHO05D016117 2.3e-19 100.5 188 35.6
BraA03t09648Z Brassica rapa HOM05D005207 ORTHO05D016117 2.3e-19 100.5 188 35.6
A03p07940 Brassica napus HOM05D002922 ORTHO05D024472 3.0e-19 100.1 171 38.6
BcaB01g05240 Brassica carinata HOM05D002922 ORTHO05D024472 6.8e-19 99.0 171 38.0
C03p09150 Brassica napus HOM05D002922 ORTHO05D024472 6.8e-19 99.0 171 38.0
BolC3t13412H Brassica oleracea HOM05D002922 ORTHO05D024472 6.8e-19 99.0 171 38.0
BraA03t10119Z Brassica rapa HOM05D002922 ORTHO05D024472 1.2e-18 98.2 171 38.0
BcaB01g06028 Brassica carinata HOM05D005207 ORTHO05D016117 2.6e-18 97.1 185 35.1
C03p03300 Brassica napus HOM05D005207 ORTHO05D016117 2.6e-18 97.1 185 35.1
BolC3t12873H Brassica oleracea HOM05D005207 ORTHO05D016117 2.6e-18 97.1 185 35.1
BcaB01g06024 Brassica carinata HOM05D005207 ORTHO05D010629 4.4e-18 96.3 197 35.0
C03p03250 Brassica napus HOM05D005207 ORTHO05D016117 4.4e-18 96.3 185 35.1
BolC3t12869H Brassica oleracea HOM05D005207 ORTHO05D016117 4.4e-18 96.3 185 35.1
C03p03270 Brassica napus HOM05D005207 ORTHO05D016117 5.7e-18 95.9 190 36.3
BolC3t12870H Brassica oleracea HOM05D005207 ORTHO05D016117 5.7e-18 95.9 190 36.3
A03p02850 Brassica napus HOM05D005207 ORTHO05D016117 7.5e-18 95.5 185 34.6
BraA03t09649Z Brassica rapa HOM05D005207 ORTHO05D016117 7.5e-18 95.5 185 34.6
AT5G03495 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 1.3e-17 94.7 184 37.0
C03p03220 Brassica napus HOM05D005207 ORTHO05D011102 1.7e-17 94.4 186 35.5
AL6G12880 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 4.9e-17 92.8 215 34.9
BcaC06g32380 Brassica carinata HOM05D005207 ORTHO05D011102 4.9e-17 92.8 190 34.2
C09p70110 Brassica napus HOM05D005207 ORTHO05D011102 4.9e-17 92.8 190 34.2
BolC9t59754H Brassica oleracea HOM05D005207 ORTHO05D011102 4.9e-17 92.8 190 34.2
A10p29730 Brassica napus HOM05D005207 ORTHO05D011102 6.3e-17 92.4 185 33.5
BraA10t45015Z Brassica rapa HOM05D005207 ORTHO05D011102 6.3e-17 92.4 185 33.5
AL3G38420 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 8.3e-17 92.0 215 34.0
BcaB01g06000 Brassica carinata HOM05D005207 ORTHO05D010629 4.1e-16 89.7 185 33.5
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 5.4e-16 89.4 215 33.0
Carub.0006s0326 Capsella rubella HOM05D005207 ORTHO05D012773 5.4e-16 89.4 221 34.8
BcaB01g06006 Brassica carinata HOM05D005207 ORTHO05D010629 7.0e-16 89.0 186 33.9
A03p03410 Brassica napus HOM05D000033 ORTHO05D005368 9.1e-16 88.6 148 35.8
BraA03t09691Z Brassica rapa HOM05D000033 ORTHO05D005368 9.1e-16 88.6 148 35.8
A03p02820 Brassica napus HOM05D005207 ORTHO05D011102 1.2e-15 88.2 182 35.2
BraA03t09645Z Brassica rapa HOM05D005207 ORTHO05D011102 1.2e-15 88.2 182 35.2
AL1G48230 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.0e-15 87.4 191 33.0
BcaC07g42014 Brassica carinata HOM05D005207 ORTHO05D024328 2.0e-15 87.4 224 32.1
C08p50700 Brassica napus HOM05D005207 ORTHO05D024328 2.0e-15 87.4 224 32.1
BolC8t52598H Brassica oleracea HOM05D005207 ORTHO05D024328 2.0e-15 87.4 224 32.1
C04p59470 Brassica napus HOM05D007694 ORTHO05D041000 3.5e-15 86.7 123 44.7
AL6G12910 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.3e-14 84.7 150 38.0
BolC9t59760H Brassica oleracea HOM05D005207 ORTHO05D011102 1.3e-14 84.7 202 31.7
BraA04t18398Z Brassica rapa HOM05D005207 ORTHO05D042709 1.3e-14 84.7 59 69.5
A09p66540 Brassica napus HOM05D005207 ORTHO05D024328 1.7e-14 84.3 224 31.2
BraA09t41992Z Brassica rapa HOM05D005207 ORTHO05D024328 1.7e-14 84.3 224 31.2
AT5G03480 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 2.9e-14 83.6 182 35.2
BcaNung06579 Brassica carinata HOM05D005207 ORTHO05D011102 5.0e-14 82.8 157 37.6
Carub.0006s0144 Capsella rubella HOM05D005207 ORTHO05D011102 6.6e-14 82.4 194 33.0
BcaB01g06007 Brassica carinata HOM05D005207 ORTHO05D011102 8.6e-14 82.0 172 32.6
BcaB01g04385 Brassica carinata HOM05D005207 ORTHO05D094505 1.5e-13 81.3 186 29.6
C03p02980 Brassica napus HOM05D005207 ORTHO05D039260 1.9e-13 80.9 180 30.6
BolC3t13212H Brassica oleracea HOM05D005207 ORTHO05D011102 4.2e-13 79.7 179 31.3
BolC8t52203H Brassica oleracea HOM05D008530 ORTHO05D011436 4.2e-13 79.7 182 32.4
AL3G11550 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 7.2e-13 79.0 200 31.5
AL3G20250 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 7.2e-13 79.0 203 31.0
BcaB01g05983 Brassica carinata HOM05D005207 ORTHO05D039260 7.2e-13 79.0 182 31.9
BcaNung06578 Brassica carinata HOM05D005207 ORTHO05D011102 1.6e-12 77.8 182 31.3
C08p46590 Brassica napus HOM05D008530 ORTHO05D011436 1.6e-12 77.8 193 31.6
BraA10t45014Z Brassica rapa HOM05D005207 ORTHO05D011102 2.8e-12 77.0 196 32.1
AL6G14750 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 3.6e-12 76.6 184 33.2
AL6G14810 Arabidopsis lyrata HOM05D001907 ORTHO05D011102 3.6e-12 76.6 184 33.2
AL6G14890 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 3.6e-12 76.6 179 32.4
A03p02800 Brassica napus HOM05D005207 ORTHO05D011102 3.6e-12 76.6 179 33.0
BraA03t09643Z Brassica rapa HOM05D005207 ORTHO05D011102 3.6e-12 76.6 179 33.0
BraA09t41666Z Brassica rapa HOM05D008530 ORTHO05D011436 3.6e-12 76.6 196 31.1
A09p63120 Brassica napus HOM05D008530 ORTHO05D011436 4.7e-12 76.3 196 30.6
Carub.0006s0188 Capsella rubella HOM05D005207 ORTHO05D011102 4.7e-12 76.3 175 32.6
AT5G53700 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 8.0e-12 75.5 216 30.1
BcaC06g32383 Brassica carinata HOM05D005207 ORTHO05D011102 1.0e-11 75.1 182 30.2
AL6G15310 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 1.8e-11 74.3 219 29.7
Aa31LG8G10640 Aethionema arabicum HOM05D001653 ORTHO05D001751 4.0e-11 73.2 216 30.6
Carub.0006s0189 Capsella rubella HOM05D005207 ORTHO05D011102 6.8e-11 72.4 175 32.0
Aa31LG8G10620 Aethionema arabicum HOM05D005207 ORTHO05D011102 2.0e-10 70.9 208 30.3
BcaB01g06058 Brassica carinata HOM05D005207 ORTHO05D039226 2.0e-10 70.9 108 39.8
AL6G12860 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 3.4e-10 70.1 83 43.4
BcaC06g32559 Brassica carinata HOM05D005207 ORTHO05D011102 4.4e-10 69.7 148 31.1
C03p02970 Brassica napus HOM05D005207 ORTHO05D011102 4.4e-10 69.7 170 30.0
Carub.0008s1399 Capsella rubella HOM05D005207 ORTHO05D012773 7.5e-10 68.9 146 32.9
Carub.0003s0820 Capsella rubella HOM05D005207 ORTHO05D012773 1.3e-09 68.2 172 30.2
BcaB01g05675 Brassica carinata HOM05D005207 ORTHO05D010629 1.4e-08 64.7 127 34.6
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.8e-08 64.3 128 33.6
AL4G36910 Arabidopsis lyrata HOM05D008530 ORTHO05D011436 3.2e-08 63.5 146 35.6
BcaB01g04188 Brassica carinata HOM05D005207 ORTHO05D011102 7.0e-08 62.4 190 28.4
Ah.01g012180 Amaranthus hybridus HOM05D002658 ORTHO05D003000 2.0e-07 60.8 163 31.9
QL03p044151 Quercus lobata HOM05D002658 ORTHO05D003000 2.0e-07 60.8 208 24.5
AL639U10010 Arabidopsis lyrata HOM05D005207 ORTHO05D010629 2.7e-07 60.5 83 41.0
AL7G15440 Arabidopsis lyrata HOM05D005207 ORTHO05D010629 2.7e-07 60.5 83 41.0
Aa31LG8G10630 Aethionema arabicum HOM05D001653 ORTHO05D015791 4.6e-07 59.7 211 27.0
BraA09t42032Z Brassica rapa HOM05D002922 ORTHO05D017209 4.6e-07 59.7 94 40.4
Carub.0007s0460 Capsella rubella HOM05D005207 ORTHO05D010629 4.6e-07 59.7 66 42.4
Thhalv10014517m.g Eutrema salsugineum HOM05D005207 ORTHO05D011436 5.9e-07 59.3 85 41.2
AL8G28020 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.0e-06 58.5 151 33.1
Thhalv10026130m.g Eutrema salsugineum HOM05D008530 ORTHO05D011436 1.0e-06 58.5 72 38.9
BolC8t52195H Brassica oleracea HOM05D008530 ORTHO05D032716 1.3e-06 58.2 70 45.7
Carub.0007s1576 Capsella rubella HOM05D005207 ORTHO05D010629 1.3e-06 58.2 73 34.2
CARHR210960 Cardamine hirsuta HOM05D005207 ORTHO05D011102 1.3e-06 58.2 144 31.2
BcaC05g26761 Brassica carinata HOM05D005207 ORTHO05D021650 1.7e-06 57.8 64 43.8
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 1.7e-06 57.8 63 39.7
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 2.3e-06 57.4 72 43.1
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 2.3e-06 57.4 170 28.2
AL8G27750 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.3e-06 57.4 159 30.8
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 2.3e-06 57.4 63 39.7
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 2.3e-06 57.4 168 28.6
BraA05t21942Z Brassica rapa HOM05D002658 ORTHO05D003000 2.9e-06 57.0 160 29.4
AL7G29920 Arabidopsis lyrata HOM05D005207 ORTHO05D010629 3.9e-06 56.6 58 43.1
AT3G09160 Arabidopsis thaliana HOM05D005207 ORTHO05D011102 3.9e-06 56.6 94 39.4
BcaC05g26764 Brassica carinata HOM05D005207 ORTHO05D021650 3.9e-06 56.6 59 47.5
BcaC07g41650 Brassica carinata HOM05D008530 ORTHO05D011436 3.9e-06 56.6 70 45.7
A09p24010 Brassica napus HOM05D002922 ORTHO05D021868 3.9e-06 56.6 88 39.8
C08p46510 Brassica napus HOM05D008530 ORTHO05D011436 3.9e-06 56.6 70 45.7
BolC8t52194H Brassica oleracea HOM05D008530 ORTHO05D011436 3.9e-06 56.6 70 45.7
BraA09t38003Z Brassica rapa HOM05D002922 ORTHO05D021868 3.9e-06 56.6 88 39.8
AL5G22900 Arabidopsis lyrata HOM05D025973 ORTHO05D012773 5.0e-06 56.2 80 38.8
AT4G24420 Arabidopsis thaliana HOM05D005207 ORTHO05D010629 5.0e-06 56.2 65 40.0
BcaB06g25912 Brassica carinata HOM05D002658 ORTHO05D003000 5.0e-06 56.2 71 39.4
A09p63000 Brassica napus HOM05D008530 ORTHO05D011436 5.0e-06 56.2 70 42.9
BcaC05g26763 Brassica carinata HOM05D005207 ORTHO05D021650 6.6e-06 55.8 164 29.9
BcaC05g28596 Brassica carinata HOM05D002658 ORTHO05D003000 6.6e-06 55.8 64 37.5
BcaC07g41644 Brassica carinata HOM05D008530 ORTHO05D011436 6.6e-06 55.8 70 45.7
BcaC07g41646 Brassica carinata HOM05D008530 ORTHO05D011436 6.6e-06 55.8 70 45.7
C08p46470 Brassica napus HOM05D008530 ORTHO05D011436 6.6e-06 55.8 70 45.7
BolC5t33429H Brassica oleracea HOM05D002658 ORTHO05D003000 6.6e-06 55.8 64 37.5


User provided reference genes

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