Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08004 Brassica carinata HOM05D003546 ORTHO05D027045 2.3e-105 385.6 194 100.0
C04p59530 Brassica napus HOM05D003546 ORTHO05D027045 6.2e-42 174.9 87 100.0
BolC4t27459H Brassica oleracea HOM05D003546 ORTHO05D027045 6.2e-42 174.9 87 100.0
C07p60450 Brassica napus HOM05D003546 ORTHO05D027045 4.0e-41 172.2 87 96.6
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 1.3e-15 87.4 96 51.0
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 1.9e-14 83.6 100 50.0
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 2.7e-13 79.7 94 46.8
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 2.7e-13 79.7 99 49.5
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 5.1e-12 75.5 96 47.9
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 6.6e-12 75.1 96 47.9
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 8.7e-12 74.7 96 47.9
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 3.3e-11 72.8 96 46.9
BcaB01g00957 Brassica carinata HOM05D003546 ORTHO05D014122 5.6e-11 72.0 85 50.6
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 2.1e-10 70.1 86 53.5
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 3.6e-10 69.3 100 44.0
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 4.8e-10 68.9 96 44.8
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 6.2e-10 68.6 115 40.9
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 1.1e-09 67.8 86 52.3
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 3.1e-09 66.2 97 42.3
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 4.0e-09 65.9 85 51.8
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 1.5e-08 63.9 96 41.7
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 1.5e-08 63.9 96 41.7
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 1.5e-08 63.9 100 42.0
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 2.0e-08 63.5 96 41.7
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 3.4e-08 62.8 96 41.7
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 3.4e-08 62.8 104 38.5
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 4.5e-08 62.4 86 50.0
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 5.8e-08 62.0 86 51.2
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 5.8e-08 62.0 86 51.2
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 5.8e-08 62.0 86 51.2
C01p09430 Brassica napus HOM05D063129 ORTHO05D041175 7.6e-08 61.6 76 52.6
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 7.6e-08 61.6 96 40.6
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 7.6e-08 61.6 96 40.6
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 9.9e-08 61.2 96 41.7
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 1.3e-07 60.8 86 50.0
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 1.3e-07 60.8 96 40.6
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 1.3e-07 60.8 96 40.6
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 1.7e-07 60.5 96 40.6
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 1.7e-07 60.5 96 39.6
BolC1t00931H Brassica oleracea HOM05D063129 ORTHO05D041175 2.2e-07 60.1 75 52.0
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 2.2e-07 60.1 96 39.6
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 2.9e-07 59.7 96 38.5
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 3.8e-07 59.3 96 38.5
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 4.9e-07 58.9 98 39.8
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 4.9e-07 58.9 96 39.6
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 6.4e-07 58.5 96 40.6
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 6.4e-07 58.5 96 38.5
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 8.4e-07 58.2 96 40.6
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 1.1e-06 57.8 96 39.6
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.1e-06 57.8 96 36.5
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 1.4e-06 57.4 96 39.6
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 1.4e-06 57.4 96 39.6
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 1.4e-06 57.4 96 39.6
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 1.9e-06 57.0 72 50.0
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.9e-06 57.0 96 36.5
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 1.9e-06 57.0 96 38.5
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 2.4e-06 56.6 96 39.6
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 3.2e-06 56.2 96 37.5
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 3.2e-06 56.2 100 39.0
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 3.2e-06 56.2 96 39.6
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 3.2e-06 56.2 96 38.5
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 4.2e-06 55.8 97 37.1
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 4.2e-06 55.8 96 39.6
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 4.2e-06 55.8 96 39.6
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 4.2e-06 55.8 96 39.6
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 4.2e-06 55.8 97 40.2
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 4.2e-06 55.8 97 40.2
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 4.2e-06 55.8 97 40.2
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 4.2e-06 55.8 96 37.5
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 5.4e-06 55.5 96 38.5
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 5.4e-06 55.5 96 37.5
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 5.4e-06 55.5 96 39.6
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 7.1e-06 55.1 96 36.5
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 9.3e-06 54.7 96 38.5
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 9.3e-06 54.7 96 39.6
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 9.3e-06 54.7 97 37.1


User provided reference genes

Program Settings