Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07991 Brassica carinata HOM05D012749 ORTHO05D039536 1.4e-142 509.6 253 100.0
C04p60990 Brassica napus HOM05D012749 ORTHO05D039536 4.9e-140 501.1 253 98.0
BolC4t27591H Brassica oleracea HOM05D012749 ORTHO05D024259 2.6e-85 319.3 224 73.2
BcaC02g07986 Brassica carinata HOM05D012749 ORTHO05D024259 5.9e-85 318.2 224 72.8
C04p61070 Brassica napus HOM05D012749 ORTHO05D024259 5.9e-85 318.2 224 72.8
A04p24250 Brassica napus HOM05D012749 ORTHO05D024259 1.3e-84 317.0 229 73.4
BraA04t17944Z Brassica rapa HOM05D012749 ORTHO05D024259 5.0e-84 315.1 229 72.5
BcaB06g28543 Brassica carinata HOM05D012749 ORTHO05D000594 3.6e-58 229.2 192 62.0
BcaB01g01586 Brassica carinata HOM05D000896 ORTHO05D000594 1.1e-14 84.7 145 37.2
Aa31LG5G5500 Aethionema arabicum HOM05D000896 ORTHO05D000594 7.1e-14 82.0 172 33.7
C04p61030 Brassica napus HOM05D012749 ORTHO05D040184 1.2e-13 81.3 72 68.1
BolC4t27594H Brassica oleracea HOM05D012749 ORTHO05D040184 1.2e-13 81.3 72 68.1
Carub.0004s1432 Capsella rubella HOM05D000896 ORTHO05D000594 7.8e-13 78.6 149 34.9
A04p23930 Brassica napus HOM05D016978 ORTHO05D018741 1.1e-11 74.7 140 33.6
A04p23950 Brassica napus HOM05D016978 ORTHO05D018741 1.1e-11 74.7 140 33.6
BraA04t17917Z Brassica rapa HOM05D016978 ORTHO05D018741 1.1e-11 74.7 140 33.6
BraA04t17919Z Brassica rapa HOM05D016978 ORTHO05D018741 1.1e-11 74.7 140 33.6
Aa31LG5G5490 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.5e-11 74.3 169 30.2
Aa31sc1610G20 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.5e-11 74.3 169 30.2
AT2G31420 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.5e-11 73.6 151 32.5
C04p60560 Brassica napus HOM05D016978 ORTHO05D018741 4.3e-11 72.8 140 33.6
C04p60630 Brassica napus HOM05D016978 ORTHO05D018741 4.3e-11 72.8 140 33.6
BolC4t27593H Brassica oleracea HOM05D000896 ORTHO05D000594 6.2e-10 68.9 141 34.0
C04p60580 Brassica napus HOM05D016978 ORTHO05D018741 1.1e-09 68.2 138 32.6
Carub.0004s1274 Capsella rubella HOM05D000896 ORTHO05D000594 1.1e-09 68.2 181 29.3
BcaB06g28546 Brassica carinata HOM05D000896 ORTHO05D000594 1.4e-09 67.8 150 31.3
Carub.0004s1302 Capsella rubella HOM05D000896 ORTHO05D000594 2.4e-09 67.0 137 32.1
AL4G28060 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.0e-09 66.2 200 30.0
BcaC02g11280 Brassica carinata HOM05D000896 ORTHO05D000594 4.0e-09 66.2 132 32.6
C04p18170 Brassica napus HOM05D000896 ORTHO05D000594 4.0e-09 66.2 132 32.6
BolC4t23373H Brassica oleracea HOM05D000896 ORTHO05D000594 4.0e-09 66.2 132 32.6
A04p24270 Brassica napus HOM05D000896 ORTHO05D000594 5.2e-09 65.9 150 32.0
BraA04t17946Z Brassica rapa HOM05D000896 ORTHO05D000594 5.2e-09 65.9 150 32.0
Carub.0004s1399 Capsella rubella HOM05D000896 ORTHO05D000594 5.2e-09 65.9 181 32.6
ClCG01G006250 Citrullus lanatus HOM05D000896 ORTHO05D000594 5.2e-09 65.9 138 30.4
MELO3C005256.2 Cucumis melo HOM05D000896 ORTHO05D000594 5.2e-09 65.9 179 27.9
A04p24120 Brassica napus HOM05D000896 ORTHO05D000594 1.5e-08 64.3 162 31.5
BcaC04g21106 Brassica carinata HOM05D000896 ORTHO05D000594 3.4e-08 63.2 130 33.1
BolC9t56400H Brassica oleracea HOM05D000896 ORTHO05D000594 3.4e-08 63.2 130 33.1
BraA04t17932Z Brassica rapa HOM05D000896 ORTHO05D000594 5.8e-08 62.4 196 29.6
ClCG01G006230 Citrullus lanatus HOM05D000896 ORTHO05D000594 5.8e-08 62.4 138 29.7
ClCG08G015080 Citrullus lanatus HOM05D000896 ORTHO05D000594 1.3e-07 61.2 162 29.6
MELO3C010943.2 Cucumis melo HOM05D000896 ORTHO05D000594 1.3e-07 61.2 149 28.9
A04p23440 Brassica napus HOM05D000896 ORTHO05D000594 2.2e-07 60.5 156 30.8
BraA04t17871Z Brassica rapa HOM05D000896 ORTHO05D000594 2.2e-07 60.5 156 30.8
BcaC07g42126 Brassica carinata HOM05D000896 ORTHO05D000594 2.9e-07 60.1 210 31.0
C08p51670 Brassica napus HOM05D000896 ORTHO05D000594 2.9e-07 60.1 210 31.0
BolC8t52695H Brassica oleracea HOM05D000896 ORTHO05D000594 2.9e-07 60.1 210 31.0
Rhsim02G0212200 Rhododendron simsii HOM05D000896 ORTHO05D000594 2.9e-07 60.1 143 33.6
BolC4t27481H Brassica oleracea HOM05D000896 ORTHO05D000594 3.8e-07 59.7 162 30.2
Carub.0001s0530 Capsella rubella HOM05D000896 ORTHO05D000594 3.8e-07 59.7 139 30.9
Sed0008121 Sechium edule HOM05D000896 ORTHO05D000594 3.8e-07 59.7 158 29.1
AL1G15520 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.9e-07 59.3 147 28.6
AL4G27540 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 6.4e-07 58.9 135 31.9
BcaB06g28529 Brassica carinata HOM05D000896 ORTHO05D000594 6.4e-07 58.9 193 28.5
CsaV3_2G029240 Cucumis sativus L. HOM05D000896 ORTHO05D000594 8.4e-07 58.5 148 29.7
C04p59750 Brassica napus HOM05D000896 ORTHO05D000594 1.4e-06 57.8 175 30.3
C04p60850 Brassica napus HOM05D000896 ORTHO05D000594 1.9e-06 57.4 192 29.2
MELO3C005306.2 Cucumis melo HOM05D000896 ORTHO05D000594 1.9e-06 57.4 138 26.8
BolC4t27576H Brassica oleracea HOM05D000896 ORTHO05D000594 2.4e-06 57.0 192 29.2
C04p61060 Brassica napus HOM05D000896 ORTHO05D000594 4.2e-06 56.2 122 34.4
CsaV3_2G028710 Cucumis sativus L. HOM05D000896 ORTHO05D000594 5.4e-06 55.8 156 28.2
CsaV3_5G027980 Cucumis sativus L. HOM05D000896 ORTHO05D000594 5.4e-06 55.8 138 26.8
CsaV3_5G028440 Cucumis sativus L. HOM05D000896 ORTHO05D000594 7.1e-06 55.5 133 27.1
C04p61020 Brassica napus HOM05D000896 ORTHO05D000594 9.3e-06 55.1 122 34.4
Sc22g0001910 Simmondsia chinensis HOM05D000896 ORTHO05D000594 9.3e-06 55.1 153 28.1


User provided reference genes

Program Settings