Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07984 Brassica carinata HOM05D003702 ORTHO05D014526 6.1e-45 183.7 89 100.0
C04p61090 Brassica napus HOM05D038349 ORTHO05D014526 2.2e-31 138.7 63 98.4
C03p89980 Brassica napus HOM05D038349 ORTHO05D014526 2.1e-29 132.1 63 95.2
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 1.2e-24 116.3 57 96.5
BcaC01g05019 Brassica carinata HOM05D019496 ORTHO05D019976 3.8e-15 84.7 60 63.3
BolC6t37169H Brassica oleracea HOM05D003702 ORTHO05D019976 3.6e-13 78.2 61 57.4
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 1.5e-11 72.8 31 93.5
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 1.5e-11 72.8 31 93.5
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 1.5e-11 72.8 31 93.5
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 1.4e-09 66.2 30 83.3
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 1.4e-09 66.2 30 83.3
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 1.4e-09 66.2 31 87.1
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 1.4e-09 66.2 30 83.3
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 1.4e-09 66.2 30 83.3
BcaC06g35173 Brassica carinata HOM05D005941 ORTHO05D007879 1.8e-09 65.9 29 86.2
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 1.7e-07 59.3 34 67.6
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 3.9e-07 58.2 34 70.6
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 5.0e-07 57.8 34 67.6
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 5.0e-07 57.8 34 67.6
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 5.0e-07 57.8 31 74.2
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 5.0e-07 57.8 34 67.6
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 6.6e-07 57.4 34 67.6
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 8.6e-07 57.0 34 64.7
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 1.1e-06 56.6 34 67.6
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 1.1e-06 56.6 34 64.7
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 1.1e-06 56.6 34 67.6
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 1.1e-06 56.6 34 67.6
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 1.1e-06 56.6 34 67.6
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 1.1e-06 56.6 34 67.6
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 1.1e-06 56.6 34 67.6
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 1.5e-06 56.2 34 64.7
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 1.5e-06 56.2 34 64.7
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 1.5e-06 56.2 34 67.6
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.5e-06 56.2 34 64.7
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.9e-06 55.8 32 71.9
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 1.9e-06 55.8 34 64.7
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 3.3e-06 55.1 32 68.8
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 3.3e-06 55.1 34 64.7
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 4.3e-06 54.7 31 71.0
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 61.8
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 61.8
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 61.8
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 61.8
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 61.8
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 61.8
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 64.7
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 4.3e-06 54.7 34 61.8
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 5.6e-06 54.3 34 64.7
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 5.6e-06 54.3 34 64.7
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 5.6e-06 54.3 34 64.7
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 5.6e-06 54.3 34 61.8
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 5.6e-06 54.3 34 64.7
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 5.6e-06 54.3 45 57.8
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 7.3e-06 53.9 34 61.8
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 7.3e-06 53.9 34 64.7
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 7.3e-06 53.9 34 61.8
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 7.3e-06 53.9 34 61.8
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 7.3e-06 53.9 34 61.8
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 7.3e-06 53.9 34 61.8
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 7.3e-06 53.9 34 61.8
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 9.5e-06 53.5 34 61.8
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 9.5e-06 53.5 34 61.8
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 9.5e-06 53.5 34 61.8
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 9.5e-06 53.5 34 61.8


User provided reference genes

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