Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 6.4e-304 1046.6 520 100.0
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 1.6e-230 802.7 652 69.0
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 8.0e-230 800.4 651 68.5
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 4.1e-226 788.1 560 77.5
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 1.4e-221 773.1 650 67.1
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 2.0e-220 769.2 653 66.9
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 3.4e-220 768.5 652 66.9
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 7.0e-218 760.8 652 66.3
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 1.6e-217 759.6 650 65.8
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 2.7e-217 758.8 651 65.3
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 3.0e-216 755.4 667 64.9
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 2.8e-214 748.8 653 64.3
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 3.7e-211 738.4 657 63.3
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 5.4e-210 734.6 650 64.2
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 1.2e-206 723.4 623 65.3
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 1.8e-205 719.5 421 89.5
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 6.4e-203 711.1 497 77.3
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 1.7e-195 686.4 639 62.6
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.1e-173 614.0 653 56.2
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 5.9e-156 555.1 662 52.6
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 3.8e-155 552.4 510 62.2
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 1.0e-139 501.1 651 48.2
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 1.7e-139 500.4 649 47.6
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 4.2e-138 495.7 651 47.9
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 7.2e-138 495.0 650 47.4
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.2e-137 494.2 650 47.2
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.8e-136 490.3 650 46.9
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 1.8e-136 490.3 660 46.5
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 3.0e-136 489.6 659 46.4
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 4.0e-136 489.2 655 47.3
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 4.0e-136 489.2 658 48.3
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.4e-135 485.7 650 46.6
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 5.7e-135 485.3 660 46.5
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 9.7e-135 484.6 652 47.5
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.3e-134 484.2 656 47.7
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 1.7e-134 483.8 650 46.6
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 2.2e-134 483.4 650 45.8
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 8.2e-134 481.5 648 47.7
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 2.4e-133 479.9 651 46.9
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 1.6e-132 477.2 663 47.4
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 2.6e-132 476.5 656 46.8
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 4.5e-132 475.7 653 46.2
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 4.5e-132 475.7 653 46.6
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 1.7e-131 473.8 652 47.1
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.2e-130 469.5 639 46.5
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 5.5e-130 468.8 656 45.3
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 7.2e-130 468.4 660 45.6
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.6e-129 467.2 660 45.5
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 1.6e-129 467.2 657 45.5
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.2e-127 461.1 652 45.9
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 3.4e-127 459.5 655 46.1
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 3.4e-127 459.5 660 45.6
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 9.8e-127 458.0 661 45.4
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 1.7e-126 457.2 664 45.6
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.8e-126 456.4 655 44.0
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 4.8e-126 455.7 652 44.8
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 4.8e-126 455.7 654 44.6
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 1.4e-125 454.1 656 44.4
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 1.8e-125 453.8 640 45.2
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 4.1e-125 452.6 503 53.7
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 2.0e-124 450.3 658 45.3
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 2.7e-124 449.9 637 45.8
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 3.5e-124 449.5 656 44.2
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 5.9e-124 448.7 654 44.2
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 7.7e-124 448.4 655 45.6
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 7.7e-124 448.4 641 45.4
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 2.9e-123 446.4 664 44.1
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 2.9e-123 446.4 664 43.7
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 3.8e-123 446.0 650 44.8
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 6.5e-123 445.3 659 45.2
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 6.5e-123 445.3 655 45.5
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 8.5e-123 444.9 655 45.2
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 1.5e-122 444.1 653 44.0
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 2.1e-121 440.3 655 45.2
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 8.0e-121 438.3 649 44.4
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 2.3e-120 436.8 655 44.1
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 3.0e-120 436.4 658 44.5
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 6.8e-120 435.3 666 44.3
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 6.8e-120 435.3 592 46.1
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 1.2e-119 434.5 649 44.4
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.2e-119 434.5 651 43.3
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 1.5e-119 434.1 655 44.9
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 9.8e-119 431.4 647 43.4
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 4.9e-118 429.1 661 44.2
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 1.1e-117 427.9 662 43.8
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 2.4e-117 426.8 654 42.2
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 1.2e-116 424.5 661 44.3
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 3.5e-116 422.9 595 44.4
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 4.5e-116 422.5 656 43.3
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 5.9e-116 422.2 653 42.6
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 5.9e-116 422.2 655 42.3
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 1.7e-115 420.6 646 43.5
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 2.3e-115 420.2 693 42.9
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 5.0e-115 419.1 671 41.7
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.6e-113 414.1 655 41.8
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 1.6e-113 414.1 653 43.0
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 2.8e-113 413.3 657 41.2
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 2.8e-113 413.3 653 41.8
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 8.0e-113 411.8 655 42.9
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 8.9e-112 408.3 680 40.9
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 1.5e-111 407.5 671 42.3
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 2.6e-111 406.8 647 41.6
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 3.4e-111 406.4 671 41.4
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 3.4e-111 406.4 639 42.7
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 9.8e-111 404.8 662 41.1
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 2.9e-110 403.3 651 41.3
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 5.4e-109 399.1 686 39.8
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 9.2e-109 398.3 695 40.9
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 4.6e-108 396.0 662 40.5
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 2.3e-107 393.7 652 41.0
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 6.6e-107 392.1 658 41.0
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 2.8e-105 386.7 563 44.9
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 4.7e-105 386.0 694 39.8
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 8.0e-105 385.2 616 44.0
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 1.0e-104 384.8 654 40.7
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 4.4e-103 379.4 648 40.7
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 3.7e-102 376.3 517 45.5
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 4.9e-102 375.9 671 39.2
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 5.4e-101 372.5 647 40.3
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 4.0e-96 356.3 634 39.1
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 8.9e-96 355.1 643 38.9
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 7.5e-95 352.1 643 39.2
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 9.8e-95 351.7 624 39.7
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 7.1e-93 345.5 634 38.2
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 7.1e-93 345.5 655 39.1
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.8e-89 333.6 601 38.9
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 4.7e-89 332.8 438 50.2
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 8.1e-89 332.0 493 45.8
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 1.4e-88 331.3 717 35.1
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 5.8e-87 325.9 646 36.8
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.9e-85 320.9 434 45.6
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 3.5e-84 316.6 598 40.1
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 2.8e-81 307.0 409 47.4
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 5.2e-80 302.8 501 42.1
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.5e-79 301.2 350 51.1
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 1.3e-78 298.1 437 43.9
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 4.9e-78 296.2 373 47.7
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 2.7e-76 290.4 641 36.0
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.7e-75 287.7 571 36.3
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 6.2e-73 279.3 523 37.7
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.7e-70 271.2 503 39.2
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 4.2e-69 266.5 484 39.7
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 4.3e-66 256.5 259 59.1
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 4.8e-65 253.1 676 30.6
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.4e-62 242.3 290 51.7
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.4e-61 241.5 520 36.7
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 6.0e-60 236.1 246 54.9
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 1.1e-58 231.9 680 30.1
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 3.2e-53 213.8 664 29.2
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 1.9e-45 188.0 378 35.7
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 8.7e-43 179.1 227 45.4
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 9.7e-42 175.6 152 63.8
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 1.4e-40 171.8 490 31.4
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 5.3e-40 169.9 671 27.7
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 3.6e-36 157.1 618 26.1
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 1.1e-34 152.1 347 35.4
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 4.2e-29 133.7 264 34.8
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 3.9e-27 127.1 163 47.9
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 1.1e-24 119.0 374 29.9
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.4e-19 102.1 61 82.0
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 1.8e-19 101.7 278 28.8
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 6.7e-19 99.8 87 62.1
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 9.7e-18 95.9 336 26.8
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 5.5e-13 80.1 185 31.4
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 1.2e-12 79.0 85 52.9
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 3.6e-12 77.4 457 26.9
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 1.8e-11 75.1 59 66.1
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 5.2e-11 73.6 59 62.7
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-10 70.5 40 82.5
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.2e-09 68.2 110 40.0
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 6.3e-09 66.6 83 51.8
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 1.1e-08 65.9 112 36.6
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 9.1e-08 62.8 54 50.0
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 1.2e-07 62.4 87 42.5
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 2.0e-07 61.6 46 63.0
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 3.5e-07 60.8 86 40.7
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.5e-06 56.2 81 40.7


User provided reference genes

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