Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 5.5e-190 667.5 351 100.0
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 3.5e-189 664.8 351 99.7
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.4e-182 642.9 355 96.1
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.4e-182 642.9 351 96.3
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 4.8e-178 627.9 374 90.9
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.8e-172 609.4 355 91.3
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 1.3e-170 603.2 355 90.7
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 2.8e-170 602.1 355 91.0
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.8e-170 602.1 355 90.1
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.4e-169 599.7 353 89.8
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 2.2e-167 592.4 352 89.2
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 2.9e-167 592.0 350 88.9
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 5.2e-164 581.3 350 88.6
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 9.7e-163 577.0 351 90.0
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 9.1e-153 543.9 394 75.9
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 3.1e-145 518.8 310 87.4
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 3.3e-142 508.8 292 90.1
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 1.6e-141 506.5 353 75.6
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.7e-120 436.0 336 66.7
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 4.6e-120 435.3 264 90.5
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.1e-118 430.6 345 65.5
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 2.8e-117 426.0 351 65.2
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.8e-117 426.0 335 66.3
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 8.1e-117 424.5 336 65.5
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 4.4e-115 418.7 350 62.9
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 9.9e-115 417.5 335 65.1
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.9e-114 416.0 335 64.8
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-112 410.2 335 65.1
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.6e-112 410.2 354 60.7
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.1e-112 409.8 336 63.7
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 2.7e-112 409.5 354 61.6
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 6.0e-112 408.3 337 61.7
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 7.8e-112 407.9 351 61.8
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.7e-111 406.8 351 61.0
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 3.0e-111 406.0 354 61.0
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 3.0e-111 406.0 354 61.3
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 3.0e-111 406.0 346 62.7
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 3.9e-111 405.6 354 60.5
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 5.1e-111 405.2 350 62.6
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 8.6e-111 404.4 352 61.1
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.5e-110 403.7 350 60.9
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 6.2e-109 398.3 337 61.1
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.4e-108 397.1 350 59.7
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 2.4e-108 396.4 354 60.5
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 5.2e-108 395.2 350 60.3
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 2.0e-107 393.3 372 57.8
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 2.6e-107 392.9 343 60.3
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 3.4e-107 392.5 337 60.8
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 7.6e-107 391.3 351 59.0
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 6.4e-106 388.3 342 58.8
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 8.4e-106 387.9 348 58.3
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 8.4e-106 387.9 376 57.4
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 3.2e-105 386.0 336 60.7
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 4.2e-105 385.6 354 58.5
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 5.4e-105 385.2 351 60.1
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 4.6e-104 382.1 337 60.5
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.0e-104 381.7 335 61.2
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 5.1e-103 378.6 351 56.4
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.1e-102 377.5 351 57.8
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 2.5e-102 376.3 353 58.9
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 3.3e-102 375.9 339 57.2
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 7.3e-102 374.8 335 58.5
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 7.3e-102 374.8 337 59.1
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 2.1e-101 373.2 338 59.5
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 3.6e-101 372.5 370 55.1
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 4.8e-101 372.1 337 58.2
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 8.1e-101 371.3 337 58.8
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.1e-100 370.9 337 59.1
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.1e-100 370.9 346 57.8
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 1.8e-100 370.2 340 56.8
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 6.9e-100 368.2 289 65.7
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 9.0e-100 367.9 338 56.8
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.5e-99 367.1 340 56.2
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 4.4e-99 365.5 353 56.4
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.3e-98 364.0 367 55.3
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.2e-98 363.2 342 55.8
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 3.8e-98 362.5 390 52.1
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 3.8e-98 362.5 338 56.8
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.4e-97 360.5 338 57.1
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.6e-96 357.1 416 48.1
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 2.7e-96 356.3 308 60.4
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.6e-96 355.5 443 47.2
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.3e-95 353.2 339 55.2
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.3e-94 348.2 300 62.0
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 7.3e-94 348.2 369 50.7
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 9.6e-94 347.8 356 53.1
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.3e-93 347.4 309 60.8
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 1.6e-93 347.1 354 52.8
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-92 344.4 302 61.6
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 1.4e-92 344.0 348 52.6
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 9.0e-92 341.3 312 59.0
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 3.8e-90 335.9 298 61.7
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.1e-89 334.3 340 55.3
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.1e-89 334.3 347 53.6
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 3.2e-89 332.8 303 60.4
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 4.2e-89 332.4 343 54.2
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 3.5e-88 329.3 292 58.6
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.9e-86 323.6 315 54.6
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.5e-86 323.2 306 56.2
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.3e-85 320.9 277 59.9
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.3e-85 320.9 458 43.2
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.1e-85 320.1 306 56.2
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.4e-84 317.4 334 50.3
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 1.4e-84 317.4 330 53.3
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 9.0e-84 314.7 362 50.8
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 1.1e-81 307.8 263 60.5
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.9e-81 307.0 331 52.3
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 1.9e-81 307.0 303 54.8
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 4.2e-81 305.8 327 52.3
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.2e-80 304.3 563 36.8
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-77 293.9 223 67.3
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.8e-76 290.4 415 42.4
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 7.6e-75 285.0 347 45.8
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 2.1e-72 276.9 259 57.9
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 5.1e-71 272.3 314 48.7
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.1e-70 271.2 340 45.6
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 2.4e-68 263.5 304 48.4
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.0e-66 258.1 360 44.4
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 5.0e-66 255.8 305 46.6
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 6.5e-66 255.4 361 44.9
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 1.9e-65 253.8 305 48.2
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 2.1e-56 223.8 279 54.8
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 2.1e-56 223.8 160 69.4
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 3.9e-55 219.5 232 50.9
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 2.2e-53 213.8 326 40.5
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 1.4e-52 211.1 155 69.0
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.8e-50 203.0 191 59.2
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 7.2e-49 198.7 372 34.9
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 7.2e-49 198.7 345 34.8
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 2.0e-46 190.7 126 73.0
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.0e-46 190.7 206 51.9
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 3.7e-45 186.4 351 37.0
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 6.3e-45 185.7 158 63.9
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 7.0e-44 182.2 314 36.3
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.7e-42 177.6 165 57.0
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.6e-40 171.0 294 37.4
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.1e-36 158.3 170 49.4
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.2e-35 154.8 110 69.1
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 6.5e-34 149.1 112 64.3
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 6.5e-34 149.1 112 64.3
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 8.0e-32 142.1 104 67.3
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.0e-31 139.8 237 38.8
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 8.3e-29 132.1 130 57.7
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 8.9e-23 112.1 129 50.4
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 5.7e-22 109.4 123 49.6
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-21 108.2 135 45.2
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 1.6e-19 101.3 84 70.2
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 5.9e-19 99.4 84 70.2
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 7.8e-19 99.0 72 75.0
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 1.3e-18 98.2 72 75.0
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.3e-18 98.2 132 45.5
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 3.9e-18 96.7 73 75.3
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 3.9e-18 96.7 105 49.5
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 5.0e-18 96.3 133 48.9
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 5.0e-18 96.3 133 48.9
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 7.3e-17 92.4 321 28.3
A10p31820 Brassica napus HOM05D004482 ORTHO05D005212 4.0e-15 86.7 55 81.8
BraA10t45227Z Brassica rapa HOM05D004482 ORTHO05D005212 4.0e-15 86.7 55 81.8
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 2.0e-14 84.3 93 46.2
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 3.3e-09 67.0 85 48.2
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.4e-07 61.6 244 25.0
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 2.0e-06 57.8 58 53.4


User provided reference genes

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