Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 1.5e-129 466.1 225 100.0
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 1.5e-129 466.1 225 100.0
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 3.8e-128 461.5 226 99.6
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 6.1e-126 454.1 225 97.3
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 9.7e-124 446.8 226 96.5
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 9.7e-124 446.8 226 96.5
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 4.5e-121 438.0 225 92.9
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 4.5e-121 438.0 225 92.9
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 5.9e-121 437.6 225 92.9
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 2.2e-120 435.6 225 92.9
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 2.2e-120 435.6 225 92.4
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 2.9e-120 435.3 225 92.4
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 2.9e-120 435.3 225 93.3
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 5.0e-120 434.5 225 92.9
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 1.1e-119 433.3 225 92.0
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 2.5e-119 432.2 225 91.6
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 1.2e-118 429.9 225 91.6
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 2.6e-116 422.2 226 89.4
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 3.0e-109 398.7 224 84.4
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 4.0e-101 371.7 217 77.0
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 5.2e-101 371.3 217 78.3
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 3.4e-100 368.6 218 77.1
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 7.5e-100 367.5 218 76.6
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 9.8e-100 367.1 225 75.1
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 2.9e-99 365.5 218 76.1
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 3.7e-99 365.2 225 74.7
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 1.8e-98 362.8 221 74.2
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 2.4e-98 362.5 217 76.5
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 4.1e-98 361.7 218 75.2
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 5.4e-98 361.3 225 73.8
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 7.0e-98 360.9 225 72.9
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 1.7e-96 356.3 217 74.2
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 2.3e-96 355.9 225 72.0
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 2.9e-96 355.5 217 72.8
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 5.0e-96 354.8 217 73.3
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 8.6e-96 354.0 222 72.5
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 8.6e-96 354.0 222 72.1
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 1.9e-95 352.8 217 74.7
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 4.3e-95 351.7 228 71.1
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 5.6e-95 351.3 219 72.1
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 1.2e-94 350.1 219 72.1
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 1.2e-94 350.1 221 72.4
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 2.1e-94 349.4 224 71.4
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 3.6e-94 348.6 224 72.3
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 4.7e-94 348.2 225 70.2
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 4.7e-94 348.2 217 73.7
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 8.0e-94 347.4 221 72.4
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 1.4e-93 346.7 220 70.0
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 1.8e-93 346.3 217 73.3
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 2.3e-93 345.9 217 72.4
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 2.3e-93 345.9 217 72.8
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 2.3e-93 345.9 220 69.5
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 3.1e-93 345.5 217 71.9
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 5.2e-93 344.7 217 73.3
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 5.2e-93 344.7 220 71.8
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 5.2e-93 344.7 228 70.6
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 6.8e-93 344.4 221 70.6
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 6.8e-93 344.4 217 73.3
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 6.8e-93 344.4 217 72.4
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 8.9e-93 344.0 215 71.6
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 8.9e-93 344.0 223 70.0
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 1.2e-92 343.6 214 72.4
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 1.2e-92 343.6 217 70.0
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 1.2e-92 343.6 230 69.1
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 1.2e-92 343.6 220 69.1
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 2.6e-92 342.4 215 71.2
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 3.4e-92 342.0 217 71.4
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 3.4e-92 342.0 216 70.8
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 4.4e-92 341.7 223 70.4
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 9.8e-92 340.5 214 71.5
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 1.7e-91 339.7 221 70.1
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 2.9e-91 339.0 221 68.8
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 3.7e-91 338.6 214 72.4
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 4.9e-91 338.2 217 69.6
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 8.3e-91 337.4 217 70.0
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 1.4e-90 336.7 217 70.0
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.9e-90 336.3 220 69.1
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 3.2e-90 335.5 214 71.5
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 4.1e-90 335.1 225 67.6
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.6e-89 333.2 255 64.7
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 1.6e-89 333.2 214 69.6
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 2.0e-89 332.8 225 66.7
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 3.5e-89 332.0 218 68.8
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 1.0e-88 330.5 217 67.7
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 1.7e-88 329.7 220 69.1
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 2.3e-88 329.3 214 71.0
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 3.0e-88 328.9 221 67.0
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 3.9e-88 328.6 229 69.4
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 5.0e-88 328.2 218 68.8
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 1.1e-87 327.0 217 69.1
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 2.1e-86 322.8 217 68.2
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 6.2e-86 321.2 217 67.3
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 5.2e-85 318.2 197 71.6
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 1.2e-84 317.0 269 59.5
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 2.6e-84 315.8 228 64.5
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 1.3e-83 313.5 311 50.5
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 2.2e-83 312.8 195 71.3
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 6.6e-80 301.2 199 68.8
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 1.2e-78 297.0 206 67.5
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 1.4e-77 293.5 167 79.0
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 1.8e-77 293.1 174 75.9
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 4.6e-73 278.5 165 74.5
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 1.2e-70 270.4 215 61.4
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 2.2e-67 259.6 225 56.0
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 4.6e-65 251.9 226 57.1
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 4.0e-61 238.8 217 53.9
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 4.0e-53 212.2 166 61.4
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 2.6e-52 209.5 141 67.4
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 5.6e-47 191.8 215 47.0
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 1.3e-43 180.6 124 66.9
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 2.2e-43 179.9 101 76.2
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 2.5e-39 166.4 99 76.8
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 7.4e-39 164.9 212 43.4
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 1.5e-36 157.1 213 41.3
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.4e-34 150.6 95 75.8
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.4e-34 150.6 95 75.8
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 1.3e-32 144.1 87 73.6
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 1.8e-32 143.7 210 40.5
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 3.9e-32 142.5 84 78.6
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 2.0e-28 130.2 105 60.0
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 4.5e-28 129.0 96 66.7
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 5.9e-28 128.6 120 55.0
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 5.9e-28 128.6 120 55.0
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 7.2e-26 121.7 79 73.4
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.5e-23 114.0 88 64.8
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 1.0e-19 101.3 79 64.6
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 2.2e-19 100.1 60 70.0
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 2.5e-18 96.7 207 31.4
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 1.6e-17 94.0 49 93.9
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 1.5e-15 87.4 191 33.5
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 2.2e-14 83.6 48 77.1
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 2.2e-14 83.6 190 31.6
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 3.5e-12 76.3 55 61.8


User provided reference genes

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