Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 9.4e-72 273.5 144 100.0
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 8.0e-63 243.8 144 93.1
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 2.3e-62 242.3 144 90.3
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 3.0e-62 241.9 144 91.7
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 4.0e-62 241.5 144 91.7
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 3.4e-61 238.4 144 88.9
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 2.7e-58 228.8 144 87.5
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 1.2e-55 219.9 141 85.8
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 1.0e-54 216.9 148 84.5
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 1.5e-53 213.0 144 82.6
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 1.5e-53 213.0 144 82.6
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 1.5e-53 213.0 148 83.8
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.2e-52 209.1 148 83.1
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 2.9e-52 208.8 148 82.4
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 3.7e-52 208.4 148 83.1
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 4.1e-51 204.9 148 79.7
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 7.0e-51 204.1 145 80.7
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 3.5e-50 201.8 148 79.7
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 1.0e-49 200.3 141 79.4
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 1.2e-47 193.4 144 78.5
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 1.4e-46 189.9 149 73.8
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 4.1e-43 178.3 125 75.2
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 2.7e-42 175.6 139 69.8
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 7.8e-42 174.1 153 65.4
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.3e-41 173.3 131 71.0
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 2.3e-41 172.6 144 68.1
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 3.0e-41 172.2 156 66.0
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 3.0e-41 172.2 130 73.8
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 3.0e-41 172.2 131 71.0
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 8.6e-41 170.6 123 72.4
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 1.9e-40 169.5 134 69.4
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 1.9e-40 169.5 156 64.1
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 1.9e-40 169.5 135 72.6
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 1.9e-40 169.5 140 66.4
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 2.5e-40 169.1 132 71.2
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 2.5e-40 169.1 132 70.5
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 3.3e-40 168.7 144 66.0
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.3e-40 168.7 147 67.3
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.3e-40 168.7 147 67.3
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 3.3e-40 168.7 120 76.7
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 4.3e-40 168.3 150 65.3
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 4.3e-40 168.3 125 71.2
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 4.3e-40 168.3 156 64.7
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 5.6e-40 167.9 147 66.7
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 5.6e-40 167.9 147 67.3
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 7.3e-40 167.5 148 66.9
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 9.5e-40 167.2 127 71.7
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 9.5e-40 167.2 141 66.7
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 9.5e-40 167.2 154 62.3
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 1.2e-39 166.8 132 69.7
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 1.2e-39 166.8 142 67.6
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 1.6e-39 166.4 144 65.3
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.6e-39 166.4 147 66.0
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 1.6e-39 166.4 140 68.6
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 2.1e-39 166.0 151 61.6
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 2.1e-39 166.0 128 70.3
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 2.1e-39 166.0 132 70.5
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 2.8e-39 165.6 148 66.2
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.8e-39 165.6 148 66.9
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.8e-39 165.6 147 65.3
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 2.8e-39 165.6 135 67.4
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 3.6e-39 165.2 132 70.5
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 4.7e-39 164.9 124 71.8
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 8.1e-39 164.1 134 65.7
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 8.1e-39 164.1 151 60.9
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 8.1e-39 164.1 144 62.5
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 1.1e-38 163.7 117 73.5
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 1.8e-38 162.9 143 65.0
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 2.3e-38 162.5 136 67.6
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 2.3e-38 162.5 138 65.9
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 3.1e-38 162.2 148 64.2
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 3.1e-38 162.2 156 60.3
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 4.0e-38 161.8 121 72.7
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 5.2e-38 161.4 142 63.4
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 5.2e-38 161.4 126 69.8
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 6.8e-38 161.0 117 74.4
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 6.8e-38 161.0 120 73.3
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 8.9e-38 160.6 145 64.1
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 1.2e-37 160.2 124 69.4
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 1.2e-37 160.2 125 71.2
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 1.5e-37 159.8 124 69.4
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 1.5e-37 159.8 130 68.5
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.5e-37 159.8 124 69.4
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 3.4e-37 158.7 141 63.1
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 3.4e-37 158.7 123 69.9
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 4.4e-37 158.3 131 68.7
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 5.8e-37 157.9 139 67.6
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 7.5e-37 157.5 120 70.8
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 7.5e-37 157.5 144 63.9
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 9.9e-37 157.1 120 73.3
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 1.3e-36 156.8 120 70.0
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 1.7e-36 156.4 150 62.0
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.7e-36 156.4 156 63.5
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 2.9e-36 155.6 121 70.2
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 3.7e-36 155.2 130 66.9
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 6.4e-36 154.5 131 66.4
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 6.4e-36 154.5 132 64.4
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 8.3e-36 154.1 132 63.6
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 1.1e-35 153.7 115 70.4
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 2.4e-35 152.5 128 67.2
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 3.2e-35 152.1 120 71.7
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 5.4e-35 151.4 144 63.9
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 7.1e-35 151.0 78 93.6
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 9.2e-35 150.6 129 64.3
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 2.7e-34 149.1 162 58.6
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 4.6e-34 148.3 82 89.0
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 1.0e-33 147.1 121 66.9
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 3.9e-33 145.2 120 65.0
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 6.6e-33 144.4 140 61.4
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 8.6e-33 144.1 129 62.0
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 1.9e-32 142.9 136 59.6
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 1.4e-30 136.7 75 86.7
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 1.4e-30 136.7 119 62.2
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 5.2e-30 134.8 113 67.3
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 2.6e-29 132.5 75 85.3
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 4.4e-29 131.7 132 56.8
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 2.5e-24 115.9 127 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 3.3e-24 115.5 128 51.6
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 7.3e-24 114.4 126 53.2
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 3.6e-23 112.1 125 52.0
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 3.4e-21 105.5 75 65.3
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 5.8e-21 104.8 79 65.8
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 2.9e-20 102.4 105 57.1
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 1.4e-19 100.1 119 52.1
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 2.5e-16 89.4 76 56.6
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 2.1e-15 86.3 73 58.9
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 7.4e-08 61.2 36 86.1
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 6.9e-06 54.7 65 43.1


User provided reference genes

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