Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07816 Brassica carinata HOM05D004275 ORTHO05D005720 1.8e-66 255.8 128 100.0
BcaC01g04172 Brassica carinata HOM05D004275 ORTHO05D005720 4.2e-47 191.4 136 74.3
C03p44270 Brassica napus HOM05D004275 ORTHO05D005720 4.2e-47 191.4 136 74.3
BolC3t16697H Brassica oleracea HOM05D004275 ORTHO05D005720 4.2e-47 191.4 136 74.3
BcaNung05804 Brassica carinata HOM05D004275 ORTHO05D005720 9.3e-47 190.3 99 92.9
A01p41670 Brassica napus HOM05D004275 ORTHO05D005720 9.3e-47 190.3 99 92.9
BolC1t05383H Brassica oleracea HOM05D004275 ORTHO05D005720 9.3e-47 190.3 99 92.9
BraA01t04241Z Brassica rapa HOM05D004275 ORTHO05D005720 9.3e-47 190.3 99 92.9
A03p36630 Brassica napus HOM05D004275 ORTHO05D005720 1.6e-46 189.5 136 74.3
BraA03t12827Z Brassica rapa HOM05D004275 ORTHO05D005720 1.6e-46 189.5 136 74.3
AL6G14220 Arabidopsis lyrata HOM05D004275 ORTHO05D005720 7.9e-46 187.2 99 91.9
AT5G04590 Arabidopsis thaliana HOM05D004275 ORTHO05D005720 7.9e-46 187.2 99 91.9
BcaB04g18592 Brassica carinata HOM05D004275 ORTHO05D005720 7.9e-46 187.2 136 72.8
BcaC06g32167 Brassica carinata HOM05D004275 ORTHO05D005720 7.9e-46 187.2 99 91.9
A10p31510 Brassica napus HOM05D004275 ORTHO05D005720 7.9e-46 187.2 99 91.9
C09p72200 Brassica napus HOM05D004275 ORTHO05D005720 7.9e-46 187.2 99 91.9
BolC9t59964H Brassica oleracea HOM05D004275 ORTHO05D005720 7.9e-46 187.2 99 91.9
BraA10t45197Z Brassica rapa HOM05D004275 ORTHO05D005720 7.9e-46 187.2 99 91.9
Carub.0006s0351 Capsella rubella HOM05D004275 ORTHO05D005720 7.9e-46 187.2 99 91.9
Thhalv10020247m.g Eutrema salsugineum HOM05D004275 ORTHO05D005720 1.8e-45 186.0 99 90.9
Sp6g38190 Schrenkiella parvula HOM05D004275 ORTHO05D005720 1.8e-45 186.0 99 90.9
CARHR208700 Cardamine hirsuta HOM05D004275 ORTHO05D005720 3.0e-45 185.3 99 89.9
Sp3g08840 Schrenkiella parvula HOM05D004275 ORTHO05D005720 3.9e-45 184.9 99 89.9
Aa31LG3G3410 Aethionema arabicum HOM05D004275 ORTHO05D005720 6.7e-45 184.1 99 89.9
Aa31LG11G5460 Aethionema arabicum HOM05D004275 ORTHO05D005720 8.7e-45 183.7 99 89.9
THA.LOC104816457 Tarenaya hassleriana HOM05D004275 ORTHO05D005720 1.9e-44 182.6 99 87.9
Potri.001G257000 Populus trichocarpa HOM05D004275 ORTHO05D005720 9.7e-44 180.3 99 85.9
Sabra16G0155700 Salix brachista HOM05D004275 ORTHO05D005720 2.2e-43 179.1 99 84.8
Atru.chr3.2700 Acer truncatum HOM05D004275 ORTHO05D005720 3.7e-43 178.3 96 87.5
MD03G1173800 Malus domestica HOM05D004275 ORTHO05D005720 3.7e-43 178.3 99 84.8
Eucgr.B03691 Eucalyptus grandis HOM05D004275 ORTHO05D005720 6.3e-43 177.6 99 83.8
FvH4_3g28720 Fragaria vesca HOM05D004275 ORTHO05D005720 1.4e-42 176.4 96 85.4
FAN11G3306 Fragaria x ananassa HOM05D004275 ORTHO05D005720 1.4e-42 176.4 96 85.4
FAN16G3143 Fragaria x ananassa HOM05D004275 ORTHO05D005720 1.4e-42 176.4 96 85.4
FAN21G1743 Fragaria x ananassa HOM05D004275 ORTHO05D005720 1.4e-42 176.4 96 85.4
FAN25G1660 Fragaria x ananassa HOM05D004275 ORTHO05D005720 1.4e-42 176.4 96 85.4
MD11G1192000 Malus domestica HOM05D004275 ORTHO05D005720 1.4e-42 176.4 99 83.8
Prupe.4G250500 Prunus persica HOM05D004275 ORTHO05D005720 1.4e-42 176.4 99 83.8
RcHm_v2.0_Chr5g0052341 Rosa chinensis HOM05D004275 ORTHO05D005720 1.4e-42 176.4 99 83.8
arahy.Tifrunner.gnm1.ann1.UPB5M5 Arachis hypogaea HOM05D004275 ORTHO05D005720 3.1e-42 175.3 99 83.8
CANSAT54G3046 Cannabis sativa HOM05D004275 ORTHO05D005720 3.1e-42 175.3 99 82.8
Ciclev10014382m.g Citrus clementina HOM05D004275 ORTHO05D005720 3.1e-42 175.3 96 86.5
MELO3C015186.2 Cucumis melo HOM05D004275 ORTHO05D005720 3.1e-42 175.3 99 84.8
CsaV3_1G042860 Cucumis sativus L. HOM05D004275 ORTHO05D005720 3.1e-42 175.3 99 84.8
Gohir.A07G123700 Gossypium hirsutum HOM05D004275 ORTHO05D005720 4.1e-42 174.9 99 82.8
Gorai.001G137900 Gossypium raimondii HOM05D004275 ORTHO05D005720 4.1e-42 174.9 99 82.8
Manes.14G003400 Manihot esculenta HOM05D004275 ORTHO05D005720 4.1e-42 174.9 99 82.8
Potri.009G052600 Populus trichocarpa HOM05D004275 ORTHO05D005720 4.1e-42 174.9 99 82.8
Thecc.09G235100 Theobroma cacao HOM05D004275 ORTHO05D005720 4.1e-42 174.9 99 82.8
ClCG03G013190 Citrullus lanatus HOM05D004275 ORTHO05D005720 5.3e-42 174.5 99 84.8
Gohir.D07G127600 Gossypium hirsutum HOM05D004275 ORTHO05D005720 5.3e-42 174.5 99 81.8
HanXRQChr06g0180721 Helianthus annuus HOM05D004275 ORTHO05D005720 5.3e-42 174.5 99 82.8
arahy.Tifrunner.gnm1.ann1.J7ITLD Arachis hypogaea HOM05D004275 ORTHO05D005720 6.9e-42 174.1 99 82.8
Gohir.A13G216800 Gossypium hirsutum HOM05D004275 ORTHO05D005720 9.0e-42 173.7 99 81.8
Gohir.D13G220400 Gossypium hirsutum HOM05D004275 ORTHO05D005720 9.0e-42 173.7 99 81.8
Gorai.013G251300 Gossypium raimondii HOM05D004275 ORTHO05D005720 9.0e-42 173.7 99 81.8
Sed0004479 Sechium edule HOM05D004275 ORTHO05D005720 9.0e-42 173.7 99 83.8
Lalb_Chr03g0024461 Lupinus albus HOM05D004275 ORTHO05D005720 1.2e-41 173.3 99 82.8
Peaxi162Scf00004g02625 Petunia axillaris HOM05D004275 ORTHO05D005720 1.5e-41 172.9 99 80.8
SalBow6G4070 Salvia bowleyana HOM05D004275 ORTHO05D005720 1.5e-41 172.9 96 84.4
ECA238G2293 Erigeron canadensis HOM05D004275 ORTHO05D005720 2.0e-41 172.6 99 81.8
Phvul.011G021800 Phaseolus vulgaris HOM05D004275 ORTHO05D005720 2.6e-41 172.2 96 82.3
Duzib168G2249 Durio zibethinus HOM05D004275 ORTHO05D005720 3.4e-41 171.8 99 81.8
Lalb_Chr01g0001011 Lupinus albus HOM05D004275 ORTHO05D005720 3.4e-41 171.8 99 81.8
Sabra09G0038300 Salix brachista HOM05D004275 ORTHO05D005720 3.4e-41 171.8 99 80.8
Glyma.11G093200 Glycine max HOM05D004275 ORTHO05D005720 4.5e-41 171.4 96 82.3
Lj3g0013987 Lotus japonicus HOM05D004275 ORTHO05D005720 4.5e-41 171.4 96 81.2
VMungo1127G0044 Vigna mungo HOM05D004275 ORTHO05D005720 4.5e-41 171.4 96 82.3
Glyma.12G019400 Glycine max HOM05D004275 ORTHO05D005720 5.9e-41 171.0 96 82.3
Lsat_1_v5_gn_2_29601 Lactuca sativa HOM05D004275 ORTHO05D005720 5.9e-41 171.0 99 80.8
Hund22025 Selenicereus undatus HOM05D004275 ORTHO05D005720 5.9e-41 171.0 99 79.8
HanXRQChr14g0432921 Helianthus annuus HOM05D004275 ORTHO05D005720 7.7e-41 170.6 99 80.8
Nn7g36235 Nelumbo nucifera HOM05D004275 ORTHO05D005720 7.7e-41 170.6 99 80.8
Cc01_g04520 Coffea canephora HOM05D004275 ORTHO05D005720 1.0e-40 170.2 99 82.8
QL01p004494 Quercus lobata HOM05D004275 ORTHO05D005720 1.0e-40 170.2 99 80.8
QL01p004587 Quercus lobata HOM05D004275 ORTHO05D005720 1.0e-40 170.2 99 80.8
GSVIVG01025246001 Vitis vinifera HOM05D004275 ORTHO05D005720 1.0e-40 170.2 99 81.8
CiPaw.14G118200 Carya illinoinensis HOM05D004275 ORTHO05D005720 1.3e-40 169.9 99 80.8
COL.COLO4_06119 Corchorus olitorius HOM05D004275 ORTHO05D005720 1.3e-40 169.9 99 80.8
MSTRG.17596 Avicennia marina HOM05D004275 ORTHO05D005720 1.7e-40 169.5 99 80.8
CiPaw.13G159400 Carya illinoinensis HOM05D004275 ORTHO05D005720 1.7e-40 169.5 99 79.8
Nn2g15308 Nelumbo nucifera HOM05D004275 ORTHO05D005720 1.7e-40 169.5 99 80.8
Oeu063325.1 Olea europaea HOM05D004275 ORTHO05D005720 1.7e-40 169.5 99 81.8
Dinv36252 Davidia involucrata HOM05D004275 ORTHO05D005720 2.2e-40 169.1 99 80.8
Nitab4.5_0002741g0060 Nicotiana tabacum HOM05D004275 ORTHO05D005720 2.2e-40 169.1 99 78.8
SGA_v2.0_scaffold42G16067 Striga asiatica HOM05D004275 ORTHO05D005720 2.2e-40 169.1 99 82.8
Migut.D00608 Erythranthe guttata HOM05D004275 ORTHO05D005720 2.9e-40 168.7 99 79.8
Solyc11g065620.2 Solanum lycopersicum HOM05D004275 ORTHO05D005720 2.9e-40 168.7 99 78.8
Sopen11g025340 Solanum pennellii HOM05D004275 ORTHO05D005720 2.9e-40 168.7 99 78.8
PGSC0003DMG400010304 Solanum tuberosum HOM05D004275 ORTHO05D005720 2.9e-40 168.7 99 78.8
TAR633G1954 Trochodendron aralioides HOM05D004275 ORTHO05D005720 2.9e-40 168.7 99 81.8
CSS0024262 Camellia sinensis var. sinensis HOM05D004275 ORTHO05D005720 3.8e-40 168.3 99 79.8
CAN.G1114.4 Capsicum annuum HOM05D004275 ORTHO05D005720 5.0e-40 167.9 99 78.8
Haze_23146 Corylus avellana HOM05D004275 ORTHO05D005720 5.0e-40 167.9 99 79.8
Duzib150G0611 Durio zibethinus HOM05D004275 ORTHO05D005720 5.0e-40 167.9 99 80.8
Lj2C629T12 Lonicera japonica HOM05D004275 ORTHO05D005720 5.0e-40 167.9 99 81.8
Sc16g0011460 Simmondsia chinensis HOM05D004275 ORTHO05D005720 5.0e-40 167.9 99 81.8
Oeu043294.1 Olea europaea HOM05D004275 ORTHO05D005720 6.5e-40 167.5 99 80.8
TWI34G1644 Tripterygium wilfordii HOM05D004275 ORTHO05D005720 6.5e-40 167.5 96 82.3
Cfa009782 Carpinus fangiana HOM05D004275 ORTHO05D005720 8.5e-40 167.2 99 78.8
Dinv22171 Davidia involucrata HOM05D004275 ORTHO05D005720 8.5e-40 167.2 99 78.8
Nitab4.5_0004741g0010 Nicotiana tabacum HOM05D004275 ORTHO05D005720 8.5e-40 167.2 99 77.8
Psat7g170960 Pisum sativum HOM05D004275 ORTHO05D005720 8.5e-40 167.2 96 79.2
TWI60G1329 Tripterygium wilfordii HOM05D004275 ORTHO05D005720 8.5e-40 167.2 99 80.8
Ca_18964_v3 Cicer arietinum L. HOM05D004275 ORTHO05D005720 1.4e-39 166.4 96 79.2
Rhsim13G0220600 Rhododendron simsii HOM05D004275 ORTHO05D005720 1.4e-39 166.4 99 79.8
TAR623G0238 Trochodendron aralioides HOM05D004275 ORTHO05D005720 1.4e-39 166.4 96 81.2
vmacro04150 Vaccinium macrocarpon HOM05D004275 ORTHO05D005720 1.4e-39 166.4 99 79.8
Actinidia16339 Actinidia chinensis HOM05D004275 ORTHO05D005720 2.5e-39 165.6 99 79.8
CSS0049776 Camellia sinensis var. sinensis HOM05D004275 ORTHO05D005720 3.2e-39 165.2 99 78.8
ATR0665G355 Amborella trichopoda HOM05D004275 ORTHO05D005720 4.2e-39 164.9 99 79.8
EL10Ac4g10239 Beta vulgaris HOM05D004275 ORTHO05D005720 5.5e-39 164.5 96 78.1
AUR62000131 Chenopodium quinoa HOM05D004275 ORTHO05D005720 5.5e-39 164.5 96 79.2
AUR62019311 Chenopodium quinoa HOM05D004275 ORTHO05D005720 5.5e-39 164.5 96 79.2
Manes.06G163600 Manihot esculenta HOM05D004275 ORTHO05D005720 5.5e-39 164.5 96 78.1
HPP92_009587 Vanilla planifolia HOM05D004275 ORTHO05D005720 5.5e-39 164.5 99 78.8
Zm00001eb292100 Zea mays HOM05D004275 ORTHO05D005720 5.5e-39 164.5 96 82.3
MBI02_g09446_MAGBIO Magnolia biondii HOM05D004275 ORTHO05D005720 1.2e-38 163.3 101 79.2
MBI04_g36080_MAGBIO Magnolia biondii HOM05D004275 ORTHO05D005720 1.2e-38 163.3 101 79.2
Medtr4g077190 Medicago truncatula HOM05D004275 ORTHO05D005720 1.2e-38 163.3 95 77.9
Os05g0503300 Oryza sativa ssp. japonica HOM05D004275 ORTHO05D005720 1.2e-38 163.3 96 81.2
PSO384G3770 Papaver somniferum HOM05D004275 ORTHO05D005720 1.2e-38 163.3 99 78.8
TPR.G13256 Trifolium pratense HOM05D004275 ORTHO05D005720 1.2e-38 163.3 95 77.9
PSO339G2862 Papaver somniferum HOM05D004275 ORTHO05D005720 1.6e-38 162.9 99 77.8
Hund07501 Selenicereus undatus HOM05D004275 ORTHO05D005720 1.6e-38 162.9 99 75.8
unitig_736.g22918 Utricularia gibba HOM05D004275 ORTHO05D005720 1.6e-38 162.9 99 76.8
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 3.6e-38 161.8 96 76.0
Aqoxy1G00279 Aquilegia oxysepala HOM05D004275 ORTHO05D005720 6.1e-38 161.0 99 75.8
Ah.06g194090 Amaranthus hybridus HOM05D004275 ORTHO05D005720 1.0e-37 160.2 96 76.0
CDE05G0132 Ceratophyllum demersum HOM05D004275 ORTHO05D005720 1.0e-37 160.2 97 82.5
CDE05G2579 Ceratophyllum demersum HOM05D004275 ORTHO05D005720 1.4e-37 159.8 100 80.0
SMO351G0325 Selaginella moellendorffii HOM05D004275 ORTHO05D005720 4.3e-36 154.8 99 76.8
Pp3c2_17740 Physcomitrium patens HOM05D004275 ORTHO05D005720 7.4e-36 154.1 101 78.2
Pp3c2_17860 Physcomitrium patens HOM05D004275 ORTHO05D005720 7.4e-36 154.1 101 78.2
SEGI_34448 Sequoiadendron giganteum HOM05D004275 ORTHO05D005720 7.4e-36 154.1 102 75.5
Pp3c3_22320 Physcomitrium patens HOM05D004275 ORTHO05D005720 6.3e-35 151.0 101 75.2
Pp3c4_1320 Physcomitrium patens HOM05D004275 ORTHO05D005720 8.2e-35 150.6 101 75.2
Mapoly0149s0024 Marchantia polymorpha HOM05D004275 ORTHO05D005720 3.1e-34 148.7 96 72.9
AagrBONN_evm.TU.Sc2ySwM_368.1754 Anthoceros agrestis HOM05D004275 ORTHO05D005720 3.4e-33 145.2 96 75.0
PRCOL_00002318 Prasinoderma coloniale HOM05D004275 ORTHO05D005720 1.9e-31 139.4 99 68.7
CBR_g23983 Chara braunii HOM05D004275 ORTHO05D005720 2.1e-30 136.0 99 66.7
Cre16.g693202 Chlamydomonas reinhardtii HOM05D004275 ORTHO05D005720 6.1e-30 134.4 99 65.7
Actinidia26795 Actinidia chinensis HOM05D004275 ORTHO05D005720 7.9e-30 134.0 99 67.7
MCO03G235 Micromonas commoda HOM05D004275 ORTHO05D005720 2.3e-29 132.5 99 65.7
Cre08.g365692 Chlamydomonas reinhardtii HOM05D004275 ORTHO05D005720 6.7e-29 131.0 99 63.6
BcaB04g21202 Brassica carinata HOM05D004275 ORTHO05D005720 3.6e-22 108.6 91 67.0
FAN25G0114 Fragaria x ananassa HOM05D004275 ORTHO05D005720 6.3e-19 97.8 51 92.2
Actinidia06913 Actinidia chinensis HOM05D004275 ORTHO05D005720 1.8e-18 96.3 54 87.0
Cfa022271 Carpinus fangiana HOM05D004275 ORTHO05D005720 2.8e-11 72.4 103 40.8


User provided reference genes

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