Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07804 Brassica carinata HOM05D006709 ORTHO05D008329 1.2e-49 199.5 98 100.0
C04p63090 Brassica napus HOM05D006709 ORTHO05D008329 2.5e-47 191.8 98 94.9
BolC4t27784H Brassica oleracea HOM05D006709 ORTHO05D008329 3.2e-47 191.4 98 95.9
BcaB06g28702 Brassica carinata HOM05D006709 ORTHO05D008329 1.0e-45 186.4 98 93.9
A04p25850 Brassica napus HOM05D006709 ORTHO05D008329 2.3e-45 185.3 98 92.9
BraA04t18087Z Brassica rapa HOM05D006709 ORTHO05D008329 2.3e-45 185.3 98 92.9
BcaC01g05832 Brassica carinata HOM05D006709 ORTHO05D008329 5.3e-42 174.1 98 88.8
C03p21970 Brassica napus HOM05D006709 ORTHO05D008329 5.3e-42 174.1 98 88.8
BolC3t14580H Brassica oleracea HOM05D006709 ORTHO05D008329 5.3e-42 174.1 98 88.8
BraA03t11140Z Brassica rapa HOM05D006709 ORTHO05D008329 5.3e-42 174.1 98 88.8
A03p18800 Brassica napus HOM05D006709 ORTHO05D008329 1.2e-41 172.9 98 87.8
BcaB01g03928 Brassica carinata HOM05D006709 ORTHO05D008329 1.5e-41 172.6 98 87.8
CARHR127610 Cardamine hirsuta HOM05D006709 ORTHO05D008329 1.2e-38 162.9 98 81.6
Thhalv10017474m.g Eutrema salsugineum HOM05D006709 ORTHO05D008329 3.6e-38 161.4 98 81.6
AL4G29260 Arabidopsis lyrata HOM05D006709 ORTHO05D008329 7.9e-38 160.2 98 79.6
Carub.0004s1522 Capsella rubella HOM05D006709 ORTHO05D008329 1.4e-37 159.5 99 80.8
AT2G33585 Arabidopsis thaliana HOM05D006709 ORTHO05D008329 3.9e-37 157.9 98 78.6
Aa31LG9G13520 Aethionema arabicum HOM05D006709 ORTHO05D008329 1.1e-36 156.4 98 77.6
Cpa.g.sc26.6 Carica papaya HOM05D006709 ORTHO05D008329 1.4e-34 149.4 98 72.4
Manes.18G001600 Manihot esculenta HOM05D006709 ORTHO05D008329 4.5e-33 144.4 91 74.7
MELO3C016084.2 Cucumis melo HOM05D006709 ORTHO05D008329 5.9e-33 144.1 96 70.8
Sp4g15940 Schrenkiella parvula HOM05D006709 ORTHO05D008329 7.7e-33 143.7 83 83.1
ClCG07G009870 Citrullus lanatus HOM05D006709 ORTHO05D008329 1.3e-32 142.9 98 69.4
Ciclev10002952m.g Citrus clementina HOM05D006709 ORTHO05D008329 1.7e-32 142.5 89 74.2
Prupe.1G298300 Prunus persica HOM05D006709 ORTHO05D008329 3.8e-32 141.4 98 70.4
QL02p015873 Quercus lobata HOM05D006709 ORTHO05D008329 6.5e-32 140.6 98 65.3
Sed0015665 Sechium edule HOM05D006709 ORTHO05D008329 1.1e-31 139.8 87 73.6
Atru.chr13.44 Acer truncatum HOM05D006709 ORTHO05D008329 1.9e-31 139.0 91 70.3
Thecc.08G099000 Theobroma cacao HOM05D006709 ORTHO05D008329 1.9e-31 139.0 98 67.3
PGR031G3816 Punica granatum HOM05D006709 ORTHO05D008329 3.2e-31 138.3 98 66.3
Actinidia15528 Actinidia chinensis HOM05D006709 ORTHO05D008329 4.2e-31 137.9 99 70.7
Actinidia17082 Actinidia chinensis HOM05D006709 ORTHO05D008329 4.2e-31 137.9 99 70.7
CSS0027441 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 5.5e-31 137.5 97 70.1
MD06G1003100 Malus domestica HOM05D006709 ORTHO05D008329 7.2e-31 137.1 89 73.0
CSS0014821 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 9.4e-31 136.7 97 70.1
Potri.005G257100 Populus trichocarpa HOM05D006709 ORTHO05D008329 9.4e-31 136.7 91 67.0
Haze_22867 Corylus avellana HOM05D006709 ORTHO05D008329 1.2e-30 136.3 89 70.8
Gohir.A09G212700 Gossypium hirsutum HOM05D006709 ORTHO05D008329 1.2e-30 136.3 96 64.6
Gohir.D09G206300 Gossypium hirsutum HOM05D006709 ORTHO05D008329 1.2e-30 136.3 96 64.6
Gorai.006G230200 Gossypium raimondii HOM05D006709 ORTHO05D008329 1.2e-30 136.3 96 64.6
vmacro21761 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 1.2e-30 136.3 97 71.1
GSVIVG01013436001 Vitis vinifera HOM05D006709 ORTHO05D008329 1.2e-30 136.3 99 68.7
Ah.11g042070 Amaranthus hybridus HOM05D006709 ORTHO05D008329 3.6e-30 134.8 95 69.5
arahy.Tifrunner.gnm1.ann1.6A59KD Arachis hypogaea HOM05D006709 ORTHO05D008329 4.7e-30 134.4 91 71.4
Dinv05492 Davidia involucrata HOM05D006709 ORTHO05D008329 4.7e-30 134.4 92 70.7
CANSAT78G0412 Cannabis sativa HOM05D006709 ORTHO05D008329 6.1e-30 134.0 97 61.9
Psat5g008400 Pisum sativum HOM05D006709 ORTHO05D008329 7.9e-30 133.7 89 67.4
RcHm_v2.0_Chr7g0216881 Rosa chinensis HOM05D006709 ORTHO05D008329 1.0e-29 133.3 93 66.7
Duzib151G1059 Durio zibethinus HOM05D006709 ORTHO05D008329 1.4e-29 132.9 96 64.6
Duzib212G0839 Durio zibethinus HOM05D006709 ORTHO05D008329 1.4e-29 132.9 98 63.3
arahy.Tifrunner.gnm1.ann1.ZQQY3F Arachis hypogaea HOM05D006709 ORTHO05D008329 1.8e-29 132.5 91 70.3
FvH4_5g26200 Fragaria vesca HOM05D006709 ORTHO05D008329 1.8e-29 132.5 93 65.6
FAN08G1650 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.8e-29 132.5 93 65.6
FAN13G1766 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.8e-29 132.5 93 65.6
Glyma.04G014200 Glycine max HOM05D006709 ORTHO05D008329 1.8e-29 132.5 97 67.0
Oeu035869.2 Olea europaea HOM05D006709 ORTHO05D008329 1.8e-29 132.5 91 71.4
Solyc04g082800.3 Solanum lycopersicum HOM05D006709 ORTHO05D008329 1.8e-29 132.5 90 70.0
Sopen04g036440 Solanum pennellii HOM05D006709 ORTHO05D008329 1.8e-29 132.5 90 70.0
Lsat_1_v5_gn_9_48241 Lactuca sativa HOM05D006709 ORTHO05D008329 3.0e-29 131.7 98 68.4
EL10Ac1g01866 Beta vulgaris HOM05D006709 ORTHO05D008329 3.9e-29 131.3 91 68.1
TPR.G38103 Trifolium pratense HOM05D006709 ORTHO05D008329 3.9e-29 131.3 90 68.9
CAN.G1330.15 Capsicum annuum HOM05D006709 ORTHO05D008329 5.1e-29 131.0 92 67.4
FAN18G1826 Fragaria x ananassa HOM05D006709 ORTHO05D008329 5.1e-29 131.0 93 65.6
Phvul.009G008700 Phaseolus vulgaris HOM05D006709 ORTHO05D008329 5.1e-29 131.0 91 68.1
Hund05070 Selenicereus undatus HOM05D006709 ORTHO05D008329 5.1e-29 131.0 94 67.0
Sc15g0004050 Simmondsia chinensis HOM05D006709 ORTHO05D008329 6.7e-29 130.6 90 67.8
BcaC01g05833 Brassica carinata HOM05D006709 ORTHO05D008329 1.5e-28 129.4 90 76.7
Medtr3g116150 Medicago truncatula HOM05D006709 ORTHO05D008329 1.5e-28 129.4 90 67.8
VMungo1309G2593 Vigna mungo HOM05D006709 ORTHO05D008329 1.5e-28 129.4 101 63.4
Ca_15382_v3 Cicer arietinum L. HOM05D006709 ORTHO05D008329 3.3e-28 128.3 90 64.4
ECA233G3448 Erigeron canadensis HOM05D006709 ORTHO05D008329 4.4e-28 127.9 92 68.5
Eucgr.F03607 Eucalyptus grandis HOM05D006709 ORTHO05D008329 5.7e-28 127.5 98 61.2
Lalb_Chr03g0035821 Lupinus albus HOM05D006709 ORTHO05D008329 5.7e-28 127.5 93 64.5
Nitab4.5_0007096g0020 Nicotiana tabacum HOM05D006709 ORTHO05D008329 7.4e-28 127.1 99 63.6
SalBow7G4607 Salvia bowleyana HOM05D006709 ORTHO05D008329 7.4e-28 127.1 89 68.5
ATR0605G117 Amborella trichopoda HOM05D006709 ORTHO05D008329 9.7e-28 126.7 87 70.1
Lj1g0007500 Lotus japonicus HOM05D006709 ORTHO05D008329 9.7e-28 126.7 89 67.4
MBI04_g31214_MAGBIO Magnolia biondii HOM05D006709 ORTHO05D008329 1.3e-27 126.3 89 66.3
Peaxi162Scf00385g00310 Petunia axillaris HOM05D006709 ORTHO05D008329 1.7e-27 125.9 90 67.8
TWI56G0059 Tripterygium wilfordii HOM05D006709 ORTHO05D008329 1.7e-27 125.9 100 64.0
Migut.C00352 Erythranthe guttata HOM05D006709 ORTHO05D008329 2.2e-27 125.6 86 67.4
Nn5g31057 Nelumbo nucifera HOM05D006709 ORTHO05D008329 2.8e-27 125.2 119 54.6
Lj4A4T20 Lonicera japonica HOM05D006709 ORTHO05D008329 3.7e-27 124.8 85 69.4
Rhsim06G0002600 Rhododendron simsii HOM05D006709 ORTHO05D008329 8.2e-27 123.6 94 64.9
HanXRQChr12g0367591 Helianthus annuus HOM05D006709 ORTHO05D008329 1.1e-26 123.2 89 65.2
Hma1.2p1_0489F.1_g164140 Hydrangea macrophylla HOM05D006709 ORTHO05D008329 1.1e-26 123.2 89 66.3
Lalb_Chr04g0257801 Lupinus albus HOM05D006709 ORTHO05D008329 1.1e-26 123.2 87 64.4
PGSC0003DMG400009925 Solanum tuberosum HOM05D006709 ORTHO05D008329 1.8e-26 122.5 87 65.5
HPP92_015749 Vanilla planifolia HOM05D006709 ORTHO05D008329 1.8e-26 122.5 92 65.2
Cc10_g00210 Coffea canephora HOM05D006709 ORTHO05D008329 3.1e-26 121.7 96 65.6
Glyma.06G014200 Glycine max HOM05D006709 ORTHO05D008329 4.1e-26 121.3 99 60.6
Os08g0512900 Oryza sativa ssp. japonica HOM05D006709 ORTHO05D008329 4.1e-26 121.3 88 67.0
Aqoxy5G00959 Aquilegia oxysepala HOM05D006709 ORTHO05D008329 7.0e-26 120.6 80 68.8
CDE05G2376 Ceratophyllum demersum HOM05D006709 ORTHO05D008329 9.1e-26 120.2 95 60.0
PSO017G0586 Papaver somniferum HOM05D006709 ORTHO05D008329 1.5e-25 119.4 102 61.8
Sabra05G0199000 Salix brachista HOM05D006709 ORTHO05D008329 1.5e-25 119.4 80 67.5
unitig_37.g13048 Utricularia gibba HOM05D006709 ORTHO05D008329 5.9e-25 117.5 91 60.4
Oeu035760.1 Olea europaea HOM05D006709 ORTHO05D008329 7.7e-25 117.1 96 62.5
COL.COLO4_12285 Corchorus olitorius HOM05D006709 ORTHO05D008329 1.7e-24 115.9 80 65.0
Lsat_1_v5_gn_8_26041 Lactuca sativa HOM05D006709 ORTHO05D008329 2.2e-24 115.5 90 63.3
SEGI_16420 Sequoiadendron giganteum HOM05D006709 ORTHO05D008329 2.2e-24 115.5 82 64.6
TAR628G1717 Trochodendron aralioides HOM05D006709 ORTHO05D008329 5.0e-24 114.4 81 67.9
CiPaw.07G132800 Carya illinoinensis HOM05D006709 ORTHO05D008329 3.2e-23 111.7 80 70.0
Zm00001eb199960 Zea mays HOM05D006709 ORTHO05D008329 3.2e-23 111.7 79 69.6
MSTRG.1007 Avicennia marina HOM05D006709 ORTHO05D008329 5.2e-21 104.4 80 63.8
FAN04G1417 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.3e-19 99.8 96 56.2
CsaV3_4G008460 Cucumis sativus L. HOM05D006709 ORTHO05D008329 2.2e-19 99.0 62 72.6
Manes.05G128900 Manihot esculenta HOM05D006709 ORTHO05D008329 2.4e-18 95.5 71 64.8
Mapoly0015s0105 Marchantia polymorpha HOM05D006709 ORTHO05D008329 5.3e-18 94.4 79 54.4
AagrBONN_evm.TU.Sc2ySwM_344.3753 Anthoceros agrestis HOM05D006709 ORTHO05D008329 1.5e-15 86.3 79 51.9
Pp3c1_9780 Physcomitrium patens HOM05D006709 ORTHO05D008329 1.0e-13 80.1 84 52.4
DCAR_016802 Daucus carota HOM05D006709 ORTHO05D008329 6.8e-13 77.4 84 44.0
SHI07946 Sapria himalayana HOM05D006709 ORTHO05D008329 2.2e-11 72.4 47 66.0
vmacro04272 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 7.0e-10 67.4 105 43.8
SalBow1G7713 Salvia bowleyana HOM05D006709 ORTHO05D008329 2.7e-09 65.5 41 68.3
DCAR_023021 Daucus carota HOM05D006709 ORTHO05D008329 1.0e-08 63.5 74 47.3
CBR_g27877 Chara braunii HOM05D006709 ORTHO05D008329 1.7e-08 62.8 60 50.0
SalBow8G3647 Salvia bowleyana HOM05D006709 ORTHO05D008329 1.7e-08 62.8 40 65.0


User provided reference genes

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