Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 3.0e-84 315.1 152 100.0
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 8.3e-26 120.9 56 100.0
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 8.3e-26 120.9 56 100.0
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 2.4e-25 119.4 56 98.2
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 9.1e-25 117.5 56 96.4
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 2.2e-23 112.8 56 91.1
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 8.5e-23 110.9 56 91.1
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 7.2e-22 107.8 55 90.9
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.4e-20 103.6 56 83.9
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 1.4e-20 103.6 56 82.1
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 1.8e-20 103.2 56 83.9
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 1.2e-19 100.5 56 82.1
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 8.3e-18 94.4 57 75.4
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 7.0e-17 91.3 64 60.9
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 5.9e-16 88.2 69 59.4
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 1.0e-15 87.4 111 45.0
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 2.9e-15 85.9 83 51.8
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 3.8e-15 85.5 56 66.1
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 6.6e-15 84.7 83 51.8
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 6.6e-15 84.7 63 58.7
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 6.6e-15 84.7 56 67.9
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 1.1e-14 84.0 110 45.5
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.9e-14 83.2 56 62.5
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.5e-14 82.8 56 62.5
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 2.5e-14 82.8 56 62.5
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 2.5e-14 82.8 83 49.4
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 4.3e-14 82.0 59 57.6
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 4.3e-14 82.0 99 44.4
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 4.3e-14 82.0 83 49.4
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 5.6e-14 81.6 56 60.7
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 5.6e-14 81.6 57 59.6
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 7.3e-14 81.3 83 47.0
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 9.5e-14 80.9 56 60.7
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 9.5e-14 80.9 56 62.5
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 1.2e-13 80.5 56 58.9
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 2.8e-13 79.3 56 62.5
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 3.6e-13 79.0 55 61.8
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 4.7e-13 78.6 55 60.0
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 4.7e-13 78.6 88 45.5
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 4.7e-13 78.6 56 55.4
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 6.1e-13 78.2 121 44.6
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 6.1e-13 78.2 56 64.3
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 1.4e-12 77.0 56 57.1
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.8e-12 76.6 58 58.6
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 3.0e-12 75.9 80 48.8
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 3.0e-12 75.9 83 43.4
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 4.0e-12 75.5 69 50.7
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 5.2e-12 75.1 116 42.2
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 5.2e-12 75.1 83 47.0
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 6.8e-12 74.7 83 45.8
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 6.8e-12 74.7 83 44.6
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 1.2e-11 73.9 81 50.6
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.5e-11 73.6 56 53.6
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.5e-11 73.6 56 53.6
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 1.5e-11 73.6 113 39.8
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 5.7e-11 71.6 89 46.1
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 5.7e-11 71.6 68 52.9
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 9.8e-11 70.9 56 55.4
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 9.8e-11 70.9 56 55.4
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 1.3e-10 70.5 160 32.5
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 1.7e-10 70.1 56 55.4
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 1.7e-10 70.1 64 48.4
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 1.7e-10 70.1 133 37.6
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 1.7e-10 70.1 52 57.7
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 1.7e-10 70.1 55 60.0
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 2.9e-10 69.3 83 42.2
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 3.7e-10 68.9 83 42.2
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 4.9e-10 68.6 83 41.0
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 8.3e-10 67.8 83 42.2
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 8.3e-10 67.8 83 42.2
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 1.8e-09 66.6 67 49.3
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 2.4e-09 66.2 54 51.9
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 3.2e-09 65.9 56 55.4
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 2.7e-08 62.8 42 64.3
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 7.8e-08 61.2 63 47.6
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 3.9e-07 58.9 49 53.1
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 6.6e-07 58.2 36 61.1
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 8.6e-07 57.8 57 52.6
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 2.5e-06 56.2 63 46.0
Lj2P292T18 Lonicera japonica HOM05D028862 ORTHO05D234044 4.3e-06 55.5 45 60.0


User provided reference genes

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