Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07773 Brassica carinata HOM05D003009 ORTHO05D001701 2.5e-43 178.3 86 100.0
C04p63300 Brassica napus HOM05D003009 ORTHO05D001701 9.4e-43 176.4 85 100.0
BolC4t27804H Brassica oleracea HOM05D003009 ORTHO05D001701 9.4e-43 176.4 85 100.0
BcaC02g07775 Brassica carinata HOM05D003009 ORTHO05D001701 3.7e-31 137.9 81 82.7
C04p63290 Brassica napus HOM05D003009 ORTHO05D001701 3.7e-31 137.9 81 82.7
BolC4t27803H Brassica oleracea HOM05D003009 ORTHO05D001701 3.7e-31 137.9 81 82.7
A04p25990 Brassica napus HOM05D003009 ORTHO05D001701 8.2e-31 136.7 81 82.7
BraA04t18102Z Brassica rapa HOM05D003009 ORTHO05D001701 8.2e-31 136.7 81 82.7
Sp4g16170 Schrenkiella parvula HOM05D003009 ORTHO05D001701 1.1e-27 126.3 81 75.3
Carub.0004s1545 Capsella rubella HOM05D003009 ORTHO05D001701 2.3e-25 118.6 81 72.8
AT2G33790 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 3.0e-25 118.2 81 74.1
AL4G29510 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 2.6e-24 115.2 81 71.6
CARHR127890 Cardamine hirsuta HOM05D003009 ORTHO05D001701 1.1e-22 109.8 81 70.4
BraA07t28924Z Brassica rapa HOM05D003009 ORTHO05D001701 5.9e-21 104.0 80 63.8
BcaC06g35349 Brassica carinata HOM05D003009 ORTHO05D001701 1.0e-20 103.2 80 62.5
BolC7t42219H Brassica oleracea HOM05D003009 ORTHO05D001701 1.0e-20 103.2 80 62.5
BcaC05g26833 Brassica carinata HOM05D003009 ORTHO05D001701 1.3e-20 102.8 80 63.8
BolC5t31428H Brassica oleracea HOM05D003009 ORTHO05D001701 1.3e-20 102.8 80 63.8
BraA09t39290Z Brassica rapa HOM05D003009 ORTHO05D001701 1.3e-20 102.8 80 63.8
CARHR027780 Cardamine hirsuta HOM05D003009 ORTHO05D001701 1.3e-20 102.8 80 66.2
A09p37790 Brassica napus HOM05D003009 ORTHO05D001701 2.9e-20 101.7 80 62.5
Carub.0001s2673 Capsella rubella HOM05D003009 ORTHO05D001701 2.9e-20 101.7 80 63.8
BcaB01g02614 Brassica carinata HOM05D003009 ORTHO05D001701 3.8e-20 101.3 82 62.2
BcaB03g13938 Brassica carinata HOM05D003009 ORTHO05D001701 3.8e-20 101.3 80 62.5
BcaB07g32438 Brassica carinata HOM05D003009 ORTHO05D001701 5.0e-20 100.9 80 63.8
A07p11350 Brassica napus HOM05D003009 ORTHO05D001701 6.5e-20 100.5 80 62.5
C05p27140 Brassica napus HOM05D003009 ORTHO05D001701 8.5e-20 100.1 80 62.5
C07p17130 Brassica napus HOM05D003009 ORTHO05D001701 8.5e-20 100.1 80 61.2
Aa31sc225G30 Aethionema arabicum HOM05D003009 ORTHO05D001701 7.2e-19 97.1 70 68.6
AL1G41840 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 7.2e-19 97.1 80 60.0
AT1G28290 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 1.2e-18 96.3 80 61.2
Thhalv10008255m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 2.1e-18 95.5 80 60.0
Sp1g24490 Schrenkiella parvula HOM05D003009 ORTHO05D001701 2.7e-18 95.1 88 56.8
Aa31sc225G10 Aethionema arabicum HOM05D003009 ORTHO05D001701 1.8e-14 82.4 82 52.4
Sabra11G0037400 Salix brachista HOM05D003009 ORTHO05D001701 1.6e-13 79.3 75 49.3
THA.LOC104814217 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 2.0e-13 79.0 80 48.8
THA.LOC104820687 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 2.0e-13 79.0 71 57.7
Potri.004G044700 Populus trichocarpa HOM05D003009 ORTHO05D001701 7.7e-13 77.0 77 45.5
ClCG03G008180 Citrullus lanatus HOM05D003009 ORTHO05D001701 1.0e-12 76.6 72 54.2
Cpa.g.sc27.37 Carica papaya HOM05D003009 ORTHO05D001701 3.8e-12 74.7 87 47.1
Sabra04G0027800 Salix brachista HOM05D003009 ORTHO05D001701 3.8e-12 74.7 75 46.7
CsaV3_1G012370 Cucumis sativus L. HOM05D003009 ORTHO05D001701 5.0e-12 74.3 72 50.0
Potri.011G053600 Populus trichocarpa HOM05D003009 ORTHO05D001701 6.6e-12 73.9 75 45.3
MELO3C002610.2 Cucumis melo HOM05D003009 ORTHO05D001701 8.6e-12 73.6 72 51.4
PGR042G0148 Punica granatum HOM05D003009 ORTHO05D001701 8.6e-12 73.6 76 44.7
COL.COLO4_31456 Corchorus olitorius HOM05D003009 ORTHO05D001701 1.1e-11 73.2 71 50.7
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 1.5e-11 72.8 71 50.7
Cfa000485 Carpinus fangiana HOM05D003009 ORTHO05D001701 1.9e-11 72.4 71 49.3
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 2.5e-11 72.0 73 50.7
Gohir.D06G132500 Gossypium hirsutum HOM05D003009 ORTHO05D001701 2.5e-11 72.0 73 50.7
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 2.5e-11 72.0 73 50.7
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 3.3e-11 71.6 71 50.7
Eucgr.D00613 Eucalyptus grandis HOM05D003009 ORTHO05D001701 3.3e-11 71.6 72 50.0
CiPaw.09G060900 Carya illinoinensis HOM05D003009 ORTHO05D001701 4.2e-11 71.2 73 47.9
FAN21G3284 Fragaria x ananassa HOM05D003009 ORTHO05D001701 4.2e-11 71.2 71 45.1
Dinv40571 Davidia involucrata HOM05D003009 ORTHO05D001701 5.5e-11 70.9 77 45.5
Cfa002262 Carpinus fangiana HOM05D003009 ORTHO05D001701 7.2e-11 70.5 71 47.9
DCAR_004069 Daucus carota HOM05D003009 ORTHO05D001701 7.2e-11 70.5 81 42.0
Sed0027600 Sechium edule HOM05D003009 ORTHO05D001701 7.2e-11 70.5 72 51.4
CSS0013482 Camellia sinensis var. sinensis HOM05D003009 ORTHO05D001701 9.5e-11 70.1 83 42.2
Hma1.2p1_0736F.1_g210750 Hydrangea macrophylla HOM05D003009 ORTHO05D001701 9.5e-11 70.1 75 44.0
Lj1A1203T34 Lonicera japonica HOM05D003009 ORTHO05D001701 9.5e-11 70.1 91 44.0
Prupe.4G048800 Prunus persica HOM05D003009 ORTHO05D001701 9.5e-11 70.1 73 43.8
Lj2A289T21 Lonicera japonica HOM05D003009 ORTHO05D001701 1.6e-10 69.3 77 44.2
MD05G1338000 Malus domestica HOM05D003009 ORTHO05D001701 1.6e-10 69.3 78 46.2
FAN25G2997 Fragaria x ananassa HOM05D003009 ORTHO05D001701 2.1e-10 68.9 71 43.7
FvH4_3g09040 Fragaria vesca HOM05D003009 ORTHO05D001701 2.8e-10 68.6 71 43.7
FAN11G0879 Fragaria x ananassa HOM05D003009 ORTHO05D001701 2.8e-10 68.6 71 43.7
QL05p041024 Quercus lobata HOM05D003009 ORTHO05D001701 4.7e-10 67.8 71 45.1
Sed0006317 Sechium edule HOM05D003009 ORTHO05D001701 4.7e-10 67.8 71 46.5
Dinv17322 Davidia involucrata HOM05D003009 ORTHO05D001701 6.1e-10 67.4 77 42.9
FAN16G3267 Fragaria x ananassa HOM05D003009 ORTHO05D001701 8.0e-10 67.0 71 43.7
MELO3C007279.2 Cucumis melo HOM05D003009 ORTHO05D001701 1.0e-09 66.6 71 45.1
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 1.0e-09 66.6 70 50.0
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 1.0e-09 66.6 71 46.5
Gohir.A05G161100 Gossypium hirsutum HOM05D003009 ORTHO05D001701 1.4e-09 66.2 80 47.5
MD10G1293100 Malus domestica HOM05D003009 ORTHO05D001701 1.4e-09 66.2 74 43.2
RcHm_v2.0_Chr5g0008631 Rosa chinensis HOM05D003009 ORTHO05D001701 2.3e-09 65.5 75 42.7
Gohir.D05G163801 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.0e-09 65.1 78 48.7
Gorai.009G168900 Gossypium raimondii HOM05D003009 ORTHO05D001701 3.0e-09 65.1 78 48.7
Actinidia05644 Actinidia chinensis HOM05D003009 ORTHO05D001701 4.0e-09 64.7 75 42.7
DCAR_008035 Daucus carota HOM05D003009 ORTHO05D001701 4.0e-09 64.7 78 43.6
ClCG01G023040 Citrullus lanatus HOM05D003009 ORTHO05D001701 5.2e-09 64.3 71 43.7
Manes.16G028850 Manihot esculenta HOM05D003009 ORTHO05D001701 5.2e-09 64.3 74 43.2
Atru.chr10.1864 Acer truncatum HOM05D003009 ORTHO05D001701 6.8e-09 63.9 81 44.4
CsaV3_6G050170 Cucumis sativus L. HOM05D003009 ORTHO05D001701 8.9e-09 63.5 71 42.3
QL05p041061 Quercus lobata HOM05D003009 ORTHO05D001701 8.9e-09 63.5 71 42.3
Rhsim13G0179100 Rhododendron simsii HOM05D003009 ORTHO05D001701 8.9e-09 63.5 76 39.5
THA.LOC104812275 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 8.9e-09 63.5 71 46.5
Lalb_Chr20g0121811 Lupinus albus HOM05D003009 ORTHO05D001701 2.6e-08 62.0 74 44.6
PSO210G4623 Papaver somniferum HOM05D003009 ORTHO05D001701 2.6e-08 62.0 63 49.2
PGR004G0870 Punica granatum HOM05D003009 ORTHO05D001701 3.4e-08 61.6 74 44.6
Ca_18551_v3 Cicer arietinum L. HOM05D003009 ORTHO05D001701 4.4e-08 61.2 83 42.2
PSO832G2944 Papaver somniferum HOM05D003009 ORTHO05D001701 4.4e-08 61.2 63 47.6
Manes.17G046500 Manihot esculenta HOM05D003009 ORTHO05D001701 5.7e-08 60.8 63 46.0
Lj6g0021953 Lotus japonicus HOM05D003009 ORTHO05D001701 7.5e-08 60.5 72 44.4
Eucgr.E03269 Eucalyptus grandis HOM05D003009 ORTHO05D001701 9.8e-08 60.1 61 50.8
Cc02_g13480 Coffea canephora HOM05D003009 ORTHO05D001701 1.3e-07 59.7 72 45.8
HanXRQChr16g0516201 Helianthus annuus HOM05D003009 ORTHO05D001701 1.3e-07 59.7 79 41.8
Aa31LG9G13710 Aethionema arabicum HOM05D003009 ORTHO05D001701 1.7e-07 59.3 73 45.2
Thhalv10017961m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 1.7e-07 59.3 75 42.7
Sed0027489 Sechium edule HOM05D003009 ORTHO05D001701 1.7e-07 59.3 71 45.1
Lsat_1_v5_gn_7_21560 Lactuca sativa HOM05D003009 ORTHO05D001701 3.7e-07 58.2 76 38.2
Oeu033907.1 Olea europaea HOM05D003009 ORTHO05D001701 3.7e-07 58.2 75 40.0
vmacro03876 Vaccinium macrocarpon HOM05D003009 ORTHO05D001701 4.9e-07 57.8 71 39.4
VMungo0251G3565 Vigna mungo HOM05D003009 ORTHO05D001701 4.9e-07 57.8 73 42.5
Ah.14g089490 Amaranthus hybridus HOM05D003009 ORTHO05D001701 6.3e-07 57.4 83 42.2
Sp4g16980 Schrenkiella parvula HOM05D003009 ORTHO05D001701 6.3e-07 57.4 81 43.2
AT2G34700 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 8.3e-07 57.0 75 41.3
EL10Ac8g20392 Beta vulgaris HOM05D003009 ORTHO05D001701 8.3e-07 57.0 83 39.8
HanXRQChr04g0124251 Helianthus annuus HOM05D003009 ORTHO05D001701 8.3e-07 57.0 79 38.0
Rhsim02G0131200 Rhododendron simsii HOM05D003009 ORTHO05D001701 8.3e-07 57.0 84 38.1
SGA_v2.0_scaffold22G09698 Striga asiatica HOM05D003009 ORTHO05D001701 8.3e-07 57.0 75 42.7
Glyma.13G178700 Glycine max HOM05D003009 ORTHO05D001701 1.1e-06 56.6 73 39.7
Psat7g114200 Pisum sativum HOM05D003009 ORTHO05D001701 2.4e-06 55.5 72 40.3
ECA234G4352 Erigeron canadensis HOM05D003009 ORTHO05D001701 3.1e-06 55.1 79 40.5
ECA236G1979 Erigeron canadensis HOM05D003009 ORTHO05D001701 3.1e-06 55.1 81 35.8
Lsat_1_v5_gn_4_53840 Lactuca sativa HOM05D003009 ORTHO05D001701 3.1e-06 55.1 79 40.5
Aa31LG6G5170 Aethionema arabicum HOM05D003009 ORTHO05D001701 4.1e-06 54.7 73 43.8
CANSAT35G1820 Cannabis sativa HOM05D003009 ORTHO05D001701 4.1e-06 54.7 71 42.3
Rhsim02G0131700 Rhododendron simsii HOM05D003009 ORTHO05D001701 4.1e-06 54.7 84 36.9
TPR.G40408 Trifolium pratense HOM05D003009 ORTHO05D001701 4.1e-06 54.7 71 40.8
GSVIVG01007286001 Vitis vinifera HOM05D003009 ORTHO05D001701 4.1e-06 54.7 77 33.8
A05p10940 Brassica napus HOM05D003009 ORTHO05D001701 5.4e-06 54.3 73 41.1
BraA05t20040Z Brassica rapa HOM05D003009 ORTHO05D001701 5.4e-06 54.3 73 41.1
Carub.0004s1639 Capsella rubella HOM05D003009 ORTHO05D001701 5.4e-06 54.3 75 40.0
Haze_06431 Corylus avellana HOM05D003009 ORTHO05D001701 7.0e-06 53.9 42 54.8
Sc24g0001000 Simmondsia chinensis HOM05D003009 ORTHO05D001701 7.0e-06 53.9 72 41.7
BcaB02g09517 Brassica carinata HOM05D003009 ORTHO05D001701 9.2e-06 53.5 75 38.7
BcaB02g09518 Brassica carinata HOM05D003009 ORTHO05D001701 9.2e-06 53.5 75 38.7
Nitab4.5_0012561g0010 Nicotiana tabacum HOM05D003009 ORTHO05D001701 9.2e-06 53.5 74 33.8


User provided reference genes

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