Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.1e-140 503.4 278 100.0
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 4.0e-103 378.6 214 98.1
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 1.1e-92 344.0 257 79.8
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 1.4e-87 327.0 206 91.7
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 4.0e-87 325.5 214 84.6
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 1.4e-84 317.0 215 86.0
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.4e-84 317.0 218 81.2
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 2.1e-83 313.2 214 79.9
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 3.5e-83 312.4 214 82.7
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 4.5e-78 295.4 214 73.4
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 1.9e-73 280.0 214 75.7
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 7.4e-73 278.1 213 75.1
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 1.3e-64 250.8 214 64.5
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 1.8e-63 246.9 214 63.6
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 5.3e-63 245.4 218 70.6
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 1.5e-62 243.8 214 65.9
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 2.6e-62 243.0 212 64.6
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 3.4e-62 242.7 214 63.6
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 5.0e-61 238.8 213 62.4
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 1.9e-60 236.9 216 62.5
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 3.2e-60 236.1 216 61.6
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 3.2e-60 236.1 211 63.5
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 5.5e-60 235.3 186 66.7
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 9.4e-60 234.6 151 84.8
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 9.4e-60 234.6 211 61.6
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 2.1e-59 233.4 151 86.1
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 6.1e-59 231.9 198 62.6
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 1.4e-58 230.7 214 60.7
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.3e-58 229.9 211 61.6
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 3.9e-58 229.2 222 59.5
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 6.7e-58 228.4 214 61.7
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 1.5e-57 227.3 215 60.5
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 2.0e-57 226.9 209 59.3
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 5.7e-57 225.3 214 58.9
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 1.3e-56 224.2 215 60.5
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 3.7e-56 222.6 214 58.9
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 4.8e-56 222.2 177 66.1
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 8.2e-56 221.5 217 61.3
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.1e-55 221.1 212 59.0
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.4e-55 220.7 209 58.9
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 1.8e-55 220.3 209 58.9
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.8e-55 220.3 212 58.5
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 2.4e-55 219.9 177 65.5
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 2.4e-55 219.9 177 65.5
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 3.1e-55 219.5 214 58.9
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 4.1e-55 219.2 223 57.4
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.5e-54 217.2 215 57.7
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 2.0e-54 216.9 209 58.4
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 3.5e-54 216.1 214 57.9
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 4.5e-54 215.7 169 66.3
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 5.9e-54 215.3 229 55.9
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 7.7e-54 214.9 212 57.5
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 1.3e-53 214.2 215 58.1
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 1.3e-53 214.2 213 58.2
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.3e-53 214.2 214 58.4
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 2.2e-53 213.4 185 62.2
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 2.9e-53 213.0 214 59.3
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 1.4e-52 210.7 174 66.7
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 1.4e-52 210.7 178 65.7
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 1.9e-52 210.3 183 60.1
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 1.9e-52 210.3 214 57.5
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 2.5e-52 209.9 212 56.1
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 5.5e-52 208.8 169 64.5
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 5.5e-52 208.8 219 55.3
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 7.2e-52 208.4 214 54.7
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 9.4e-52 208.0 212 55.7
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.2e-51 207.6 213 57.3
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 4.7e-51 205.7 214 57.0
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 2.3e-50 203.4 215 55.3
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 2.3e-50 203.4 212 54.7
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 2.0e-49 200.3 197 56.3
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 4.4e-49 199.1 197 55.3
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 5.7e-49 198.7 227 52.0
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 1.4e-47 194.1 204 55.4
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 2.4e-47 193.4 214 55.6
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 3.5e-46 189.5 170 62.4
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 5.9e-46 188.7 145 71.7
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.0e-45 188.0 212 51.9
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.2e-45 186.8 212 52.4
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 3.6e-43 179.5 259 49.4
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 3.0e-42 176.4 216 50.9
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 5.2e-42 175.6 183 51.4
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 8.8e-42 174.9 214 51.4
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.2e-41 174.5 154 61.0
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 1.5e-41 174.1 214 49.5
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 3.4e-41 172.9 214 56.5
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 4.4e-41 172.6 171 53.2
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.2e-40 170.2 198 47.5
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.1e-39 166.0 156 58.3
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.0e-38 163.7 144 59.7
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 2.7e-38 163.3 188 60.6
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 5.9e-38 162.2 146 58.2
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.0e-37 161.4 151 57.6
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 5.0e-37 159.1 157 58.0
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 8.5e-37 158.3 214 46.7
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 4.2e-36 156.0 155 58.1
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 1.2e-35 154.5 146 60.3
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 2.1e-35 153.7 211 41.7
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 4.4e-33 146.0 158 53.8
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 8.3e-32 141.7 167 51.5
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 1.2e-30 137.9 219 45.7
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 1.0e-29 134.8 218 44.5
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 8.6e-29 131.7 175 47.4
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 3.3e-28 129.8 214 43.5
BolC4t27811H Brassica oleracea HOM05D006133 ORTHO05D042833 1.5e-25 120.9 64 98.4
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 2.2e-24 117.1 93 69.9
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 8.3e-24 115.2 172 36.0
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 8.3e-24 115.2 213 41.3
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 1.6e-22 110.9 169 45.6
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 3.9e-21 106.3 212 43.9
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 5.6e-20 102.4 135 50.4
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 1.1e-15 88.2 82 61.0
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 7.0e-15 85.5 149 33.6
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 6.0e-14 82.4 180 32.8
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.6e-13 79.0 105 46.7
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 8.6e-13 78.6 105 47.6
A04p26020 Brassica napus HOM05D006133 ORTHO05D042833 2.5e-12 77.0 42 97.6
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 3.3e-12 76.6 107 47.7
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 7.3e-12 75.5 207 33.8
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 1.6e-11 74.3 44 84.1
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 1.4e-10 71.2 80 51.2
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.0e-09 67.4 92 46.7
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.6e-09 67.0 69 49.3
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.3e-08 64.7 144 38.9
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.4e-08 62.4 92 44.6
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.5e-06 56.6 76 48.7


User provided reference genes

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