Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07740 Brassica carinata HOM05D007600 ORTHO05D009132 2.7e-48 194.9 91 100.0
BolC4t27889H Brassica oleracea HOM05D007600 ORTHO05D009132 8.7e-47 189.9 90 96.7
C04p64110 Brassica napus HOM05D007600 ORTHO05D009132 5.3e-44 180.6 91 94.5
BraA04t18175Z Brassica rapa HOM05D007600 ORTHO05D009132 5.3e-44 180.6 91 94.5
A04p26690 Brassica napus HOM05D007600 ORTHO05D009132 4.6e-40 167.5 81 93.8
Sp3g15230 Schrenkiella parvula HOM05D007600 ORTHO05D009132 2.2e-21 105.5 91 59.3
Thhalv10022138m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 3.7e-21 104.8 84 64.3
BcaC01g03795 Brassica carinata HOM05D007600 ORTHO05D009132 1.3e-18 96.3 91 50.5
C03p48550 Brassica napus HOM05D007600 ORTHO05D009132 1.7e-18 95.9 91 50.5
BolC3t17133H Brassica oleracea HOM05D007600 ORTHO05D009132 1.7e-18 95.9 91 50.5
Thhalv10015617m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 2.2e-18 95.5 88 54.5
BraA03t13150Z Brassica rapa HOM05D007600 ORTHO05D009132 3.8e-18 94.7 91 51.6
A03p40020 Brassica napus HOM05D007600 ORTHO05D009132 5.0e-18 94.4 91 50.5
BcaB04g18922 Brassica carinata HOM05D007600 ORTHO05D009132 8.5e-18 93.6 88 51.1
BcaB06g25788 Brassica carinata HOM05D007600 ORTHO05D009132 2.5e-17 92.0 90 50.0
C03p48540 Brassica napus HOM05D007600 ORTHO05D009132 2.5e-17 92.0 90 50.0
BolC3t17132H Brassica oleracea HOM05D007600 ORTHO05D009132 2.5e-17 92.0 90 50.0
BcaC05g28837 Brassica carinata HOM05D007600 ORTHO05D009132 4.2e-17 91.3 89 49.4
A05p32720 Brassica napus HOM05D007600 ORTHO05D009132 4.2e-17 91.3 89 49.4
BraA05t22094Z Brassica rapa HOM05D007600 ORTHO05D009132 4.2e-17 91.3 89 49.4
CARHR092260 Cardamine hirsuta HOM05D007600 ORTHO05D009132 4.2e-17 91.3 84 51.2
AL3G29990 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 7.2e-17 90.5 84 52.4
BcaC07g38580 Brassica carinata HOM05D007600 ORTHO05D009132 7.2e-17 90.5 83 50.6
A03p40010 Brassica napus HOM05D007600 ORTHO05D009132 9.3e-17 90.1 91 50.5
C05p49420 Brassica napus HOM05D007600 ORTHO05D009132 1.6e-16 89.4 84 47.6
BolC5t33688H Brassica oleracea HOM05D007600 ORTHO05D009132 3.6e-16 88.2 89 48.3
A08p33850 Brassica napus HOM05D007600 ORTHO05D009132 7.9e-16 87.0 84 50.0
BraA08t35300Z Brassica rapa HOM05D007600 ORTHO05D009132 7.9e-16 87.0 84 50.0
AT3G17010 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.0e-15 86.7 85 52.9
BcaC07g38617 Brassica carinata HOM05D007600 ORTHO05D009132 1.4e-15 86.3 81 50.6
Carub.0003s1676 Capsella rubella HOM05D007600 ORTHO05D009132 1.4e-15 86.3 84 50.0
BcaB06g25793 Brassica carinata HOM05D007600 ORTHO05D009132 5.1e-15 84.3 84 47.6
BcaC01g03796 Brassica carinata HOM05D007600 ORTHO05D009132 6.7e-15 84.0 75 49.3
Aa31LG8G13300 Aethionema arabicum HOM05D007600 ORTHO05D009132 4.3e-14 81.3 78 50.0
BraA03t13149Z Brassica rapa HOM05D007600 ORTHO05D009132 5.7e-14 80.9 74 51.4
A10p21410 Brassica napus HOM05D007600 ORTHO05D009132 2.2e-13 79.0 76 46.1
BcaB04g18921 Brassica carinata HOM05D007600 ORTHO05D009132 3.7e-13 78.2 66 53.0
BraA10t44204Z Brassica rapa HOM05D007600 ORTHO05D009132 4.8e-13 77.8 76 43.4
Aa31LG11G11510 Aethionema arabicum HOM05D007600 ORTHO05D009132 6.3e-13 77.4 80 47.5
Sp6g26290 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.1e-12 76.6 76 50.0
BcaC04g18726 Brassica carinata HOM05D007600 ORTHO05D009132 1.4e-12 76.3 76 44.7
C09p58890 Brassica napus HOM05D007600 ORTHO05D009132 1.4e-12 76.3 76 44.7
BolC9t58734H Brassica oleracea HOM05D007600 ORTHO05D009132 1.4e-12 76.3 76 44.7
AL6G29100 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 5.3e-12 74.3 78 44.9
CARHR194980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 2.0e-11 72.4 78 44.9
Sp6g26220 Schrenkiella parvula HOM05D007600 ORTHO05D009132 2.6e-11 72.0 76 46.1
Thhalv10015705m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 7.7e-11 70.5 79 39.2
BcaB08g36708 Brassica carinata HOM05D007600 ORTHO05D009132 2.9e-10 68.6 76 42.1
BcaC04g20154 Brassica carinata HOM05D007600 ORTHO05D009132 2.9e-10 68.6 77 36.4
BolC2t06864H Brassica oleracea HOM05D007600 ORTHO05D009132 2.9e-10 68.6 83 38.6
CARHR106010 Cardamine hirsuta HOM05D007600 ORTHO05D009132 2.9e-10 68.6 76 44.7
CARHR195070 Cardamine hirsuta HOM05D007600 ORTHO05D009132 3.8e-10 68.2 75 44.0
AT5G18000 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 5.0e-10 67.8 78 43.6
BraA02t05424Z Brassica rapa HOM05D007600 ORTHO05D009132 5.0e-10 67.8 84 38.1
AT5G18090 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 6.5e-10 67.4 76 43.4
C02p09570 Brassica napus HOM05D007600 ORTHO05D009132 8.5e-10 67.0 82 37.8
C09p47210 Brassica napus HOM05D007600 ORTHO05D009132 8.5e-10 67.0 77 35.1
BolC9t57576H Brassica oleracea HOM05D007600 ORTHO05D009132 8.5e-10 67.0 77 35.1
A02p04630 Brassica napus HOM05D007600 ORTHO05D009132 1.1e-09 66.6 83 37.3
Thhalv10014143m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 1.4e-09 66.2 71 43.7
BcaC03g13563 Brassica carinata HOM05D007600 ORTHO05D009132 1.9e-09 65.9 76 40.8
AL6G29290 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 2.5e-09 65.5 76 40.8
Carub.0006s1638 Capsella rubella HOM05D007600 ORTHO05D009132 3.2e-09 65.1 76 40.8
AL3G52300 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 7.2e-09 63.9 78 42.3
AL457U10020 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 1.2e-08 63.2 68 41.2
Carub.0003s2950 Capsella rubella HOM05D007600 ORTHO05D009132 1.6e-08 62.8 69 43.5
AL6G20180 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 2.1e-08 62.4 78 41.0
AT2G16210 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 2.1e-08 62.4 78 41.0
AT5G09780 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 2.1e-08 62.4 77 37.7
BcaB05g23317 Brassica carinata HOM05D007600 ORTHO05D009132 3.6e-08 61.6 83 34.9
Thhalv10001785m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 4.7e-08 61.2 81 40.7
AT2G35310 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 7.9e-08 60.5 68 38.2
THA.LOC104819596 Tarenaya hassleriana HOM05D007600 ORTHO05D009132 1.8e-07 59.3 78 37.2
CARHR291980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 3.0e-07 58.5 76 44.7
Thhalv10022780m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 8.8e-07 57.0 75 37.3
Thecc.02G093100 Theobroma cacao HOM05D000823 ORTHO05D000088 2.0e-06 55.8 73 37.0
DCAR_003838 Daucus carota HOM05D000395 ORTHO05D000088 4.4e-06 54.7 88 29.5


User provided reference genes

Program Settings