Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07738 Brassica carinata HOM05D003281 ORTHO05D032323 9.8e-95 350.1 178 100.0
BolC4t27890H Brassica oleracea HOM05D003281 ORTHO05D032323 2.9e-62 242.3 138 92.0
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 5.7e-18 95.1 199 40.2
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 1.7e-17 93.6 199 39.7
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 1.7e-17 93.6 199 39.7
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 2.8e-17 92.8 199 39.7
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.1e-16 90.9 213 37.6
BcaC02g07739 Brassica carinata HOM05D003281 ORTHO05D004128 8.5e-14 81.3 42 95.2
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 3.6e-12 75.9 134 41.0
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 4.7e-12 75.5 220 33.6
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 6.1e-12 75.1 133 41.4
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 8.0e-12 74.7 133 41.4
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 8.0e-12 74.7 133 41.4
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 8.0e-12 74.7 133 41.4
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 1.4e-11 73.9 133 40.6
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 3.9e-11 72.4 133 40.6
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 6.7e-11 71.6 133 40.6
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 6.7e-11 71.6 133 40.6
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 6.7e-11 71.6 93 47.3
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 1.1e-10 70.9 93 46.2
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 1.1e-10 70.9 111 41.4
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 1.1e-10 70.9 133 38.3
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 1.5e-10 70.5 114 42.1
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 1.5e-10 70.5 133 37.6
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 1.5e-10 70.5 133 38.3
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 1.5e-10 70.5 105 43.8
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 1.5e-10 70.5 133 39.8
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 2.0e-10 70.1 134 38.1
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 2.0e-10 70.1 134 38.1
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 2.0e-10 70.1 133 38.3
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 2.0e-10 70.1 133 38.3
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 2.0e-10 70.1 133 38.3
MD12G1088900 Malus domestica HOM05D003281 ORTHO05D004128 2.0e-10 70.1 118 40.7
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 2.0e-10 70.1 133 38.3
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 2.0e-10 70.1 133 38.3
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 2.6e-10 69.7 93 45.2
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 2.6e-10 69.7 93 45.2
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 2.6e-10 69.7 93 45.2
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 2.6e-10 69.7 93 45.2
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 2.6e-10 69.7 93 45.2
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 2.6e-10 69.7 93 45.2
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 4.4e-10 68.9 133 39.8
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 4.4e-10 68.9 133 38.3
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 4.4e-10 68.9 122 39.3
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 4.4e-10 68.9 93 45.2
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 4.4e-10 68.9 133 38.3
Hund10057 Selenicereus undatus HOM05D003281 ORTHO05D004128 5.7e-10 68.6 133 37.6
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 5.7e-10 68.6 114 43.0
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 7.4e-10 68.2 93 45.2
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 7.4e-10 68.2 43 72.1
Rhsim01G0111500 Rhododendron simsii HOM05D003281 ORTHO05D004128 7.4e-10 68.2 93 45.2
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 7.4e-10 68.2 134 37.3
A04p28850 Brassica napus HOM05D003281 ORTHO05D004128 9.7e-10 67.8 124 39.5
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 9.7e-10 67.8 93 44.1
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 9.7e-10 67.8 133 37.6
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 9.7e-10 67.8 133 37.6
PRCOL_00001991 Prasinoderma coloniale HOM05D003281 ORTHO05D004128 9.7e-10 67.8 41 75.6
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 9.7e-10 67.8 93 44.1
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 1.3e-09 67.4 133 37.6
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 1.3e-09 67.4 43 72.1
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 1.3e-09 67.4 41 80.5
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 1.3e-09 67.4 93 45.2
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 1.3e-09 67.4 43 74.4
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 1.3e-09 67.4 93 45.2
vmacro14667 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 1.3e-09 67.4 133 37.6
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 1.7e-09 67.0 43 72.1
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 1.7e-09 67.0 73 52.1
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 1.7e-09 67.0 43 72.1
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 2.2e-09 66.6 133 36.8
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 2.2e-09 66.6 133 37.6
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 2.2e-09 66.6 133 36.8
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 2.2e-09 66.6 133 38.3
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 2.2e-09 66.6 133 38.3
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 2.2e-09 66.6 93 43.0
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 2.2e-09 66.6 133 36.8
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.2e-09 66.6 133 37.6
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.2e-09 66.6 133 37.6
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 2.2e-09 66.6 133 37.6
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 2.8e-09 66.2 133 36.8
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 2.8e-09 66.2 133 36.8
FAN20G2649 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.8e-09 66.2 133 36.8
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.8e-09 66.2 133 36.8
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 2.8e-09 66.2 133 36.8
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 2.8e-09 66.2 93 44.1
SalBow3G0238 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.8e-09 66.2 133 36.8
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 3.7e-09 65.9 134 38.1
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 3.7e-09 65.9 93 47.3
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 3.7e-09 65.9 41 75.6
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 3.7e-09 65.9 41 75.6
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 3.7e-09 65.9 93 43.0
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 3.7e-09 65.9 93 44.1
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 3.7e-09 65.9 134 36.6
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 3.7e-09 65.9 43 69.8
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 3.7e-09 65.9 43 69.8
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 3.7e-09 65.9 133 37.6
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 3.7e-09 65.9 133 36.1
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 3.7e-09 65.9 43 69.8
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 3.7e-09 65.9 43 69.8
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 3.7e-09 65.9 43 69.8
SGA_v2.0_scaffold6G03254 Striga asiatica HOM05D003281 ORTHO05D004128 3.7e-09 65.9 133 36.8
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 4.8e-09 65.5 133 36.1
FAN03G3028 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.8e-09 65.5 43 72.1
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.8e-09 65.5 43 69.8
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 4.8e-09 65.5 133 37.6
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 4.8e-09 65.5 43 69.8
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 4.8e-09 65.5 93 43.0
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 6.3e-09 65.1 41 75.6
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 6.3e-09 65.1 43 72.1
BcaC02g11585 Brassica carinata HOM05D003281 ORTHO05D004128 6.3e-09 65.1 165 35.8
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 6.3e-09 65.1 133 36.1
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 6.3e-09 65.1 133 36.1
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 6.3e-09 65.1 41 75.6
unitig_46.g18256 Utricularia gibba HOM05D003281 ORTHO05D004128 6.3e-09 65.1 45 64.4
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 6.3e-09 65.1 45 64.4
unitig_46.g18376 Utricularia gibba HOM05D003281 ORTHO05D004128 6.3e-09 65.1 45 64.4
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 6.3e-09 65.1 45 64.4
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 8.2e-09 64.7 41 73.2
BcaC04g19805 Brassica carinata HOM05D003281 ORTHO05D004128 8.2e-09 64.7 33 93.9
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 8.2e-09 64.7 133 36.1
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 8.2e-09 64.7 93 43.0
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 8.2e-09 64.7 41 73.2
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 1.1e-08 64.3 43 67.4
C09p51500 Brassica napus HOM05D003281 ORTHO05D004128 1.1e-08 64.3 32 96.9
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 1.1e-08 64.3 43 67.4
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 1.1e-08 64.3 43 67.4
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 1.1e-08 64.3 93 41.9
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 1.1e-08 64.3 43 67.4
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 1.4e-08 63.9 133 36.8
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 1.4e-08 63.9 43 72.1
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 1.8e-08 63.5 43 69.8
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 1.8e-08 63.5 41 73.2
Rhsim04G0092800 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.8e-08 63.5 41 73.2
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 1.8e-08 63.5 41 73.2
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 2.4e-08 63.2 41 68.3
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 2.4e-08 63.2 43 67.4
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 2.4e-08 63.2 51 68.6
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 3.1e-08 62.8 133 36.8
C09p51540 Brassica napus HOM05D003281 ORTHO05D004128 3.1e-08 62.8 31 96.8
BolC9t58011H Brassica oleracea HOM05D003281 ORTHO05D004128 3.1e-08 62.8 31 96.8
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 3.1e-08 62.8 43 65.1
MCO04G009 Micromonas commoda HOM05D003281 ORTHO05D004128 4.1e-08 62.4 41 70.7
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 4.1e-08 62.4 41 73.2
CDE02G3604 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 5.3e-08 62.0 41 70.7
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 7.0e-08 61.6 133 34.6
HPP92_009499 Vanilla planifolia HOM05D003281 ORTHO05D004128 9.1e-08 61.2 93 43.0
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 1.6e-07 60.5 133 35.3
Cre12.g537581 Chlamydomonas reinhardtii HOM05D003281 ORTHO05D004128 1.6e-07 60.5 41 68.3
AUR62022320 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.0e-07 60.1 43 62.8
Rhsim04G0089200 Rhododendron simsii HOM05D003281 ORTHO05D004128 4.5e-07 58.9 41 68.3
Cpa.g.c33226 Carica papaya HOM05D003281 ORTHO05D004128 7.7e-07 58.2 69 49.3
FAN06G1854 Fragaria x ananassa HOM05D003281 ORTHO05D004128 7.7e-07 58.2 69 47.8
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 7.7e-07 58.2 69 46.4
BraA09t41745Z Brassica rapa HOM05D003281 ORTHO05D004128 1.0e-06 57.8 51 62.7
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.3e-06 57.4 55 56.4
Eucgr.L01257 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.7e-06 57.0 41 65.9
Haze_06128 Corylus avellana HOM05D003281 ORTHO05D004128 2.2e-06 56.6 51 60.8
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.2e-06 56.6 69 46.4
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 2.2e-06 56.6 69 47.8
unitig_46.g18375 Utricularia gibba HOM05D003281 ORTHO05D004128 5.0e-06 55.5 59 55.9
unitig_48.g30290 Utricularia gibba HOM05D003281 ORTHO05D004128 5.0e-06 55.5 59 55.9


User provided reference genes

Program Settings