Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07730 Brassica carinata HOM05D000111 ORTHO05D001475 1.0e-30 136.0 62 100.0
BcaC02g07721 Brassica carinata HOM05D000111 ORTHO05D001475 5.8e-18 93.6 124 45.2
BolC4t27908H Brassica oleracea HOM05D000111 ORTHO05D001475 5.8e-18 93.6 124 45.2
A04p26830 Brassica napus HOM05D000111 ORTHO05D001475 3.7e-17 90.9 124 42.7
C04p64230 Brassica napus HOM05D000111 ORTHO05D001475 1.1e-16 89.4 124 41.9
BcaC02g07723 Brassica carinata HOM05D000111 ORTHO05D001475 5.4e-16 87.0 124 42.7
C04p64220 Brassica napus HOM05D000111 ORTHO05D001475 5.4e-16 87.0 124 42.7
BolC4t27906H Brassica oleracea HOM05D000111 ORTHO05D001475 1.0e-14 82.8 122 41.8
BraA04t18185Z Brassica rapa HOM05D000111 ORTHO05D001475 1.0e-14 82.8 122 41.8
BcaB06g28835 Brassica carinata HOM05D000111 ORTHO05D001475 3.3e-13 77.8 121 38.8
C03p29270 Brassica napus HOM05D000111 ORTHO05D001475 3.6e-12 74.3 124 37.1
Thhalv10017827m.g Eutrema salsugineum HOM05D000111 ORTHO05D001475 3.6e-12 74.3 124 37.1
Thhalv10017910m.g Eutrema salsugineum HOM05D000111 ORTHO05D001475 3.6e-12 74.3 124 37.1
Sp4g20610 Schrenkiella parvula HOM05D000111 ORTHO05D001475 6.2e-12 73.6 123 37.4
A03p24520 Brassica napus HOM05D000111 ORTHO05D001475 1.1e-11 72.8 124 36.3
Carub.0004s2038 Capsella rubella HOM05D000111 ORTHO05D001475 1.1e-11 72.8 124 35.5
AL4G35450 Arabidopsis lyrata HOM05D000111 ORTHO05D001475 1.8e-11 72.0 124 37.1
AL4G35480 Arabidopsis lyrata HOM05D000111 ORTHO05D001475 1.8e-11 72.0 124 37.1
A04p26800 Brassica napus HOM05D000111 ORTHO05D001475 1.8e-11 72.0 121 36.4
C04p64200 Brassica napus HOM05D000111 ORTHO05D001475 1.8e-11 72.0 121 36.4
BraA04t18184Z Brassica rapa HOM05D000111 ORTHO05D001475 1.8e-11 72.0 121 36.4
Thhalv10009920m.g Eutrema salsugineum HOM05D000111 ORTHO05D001475 1.8e-11 72.0 124 35.5
AL4G31290 Arabidopsis lyrata HOM05D000111 ORTHO05D001475 3.1e-11 71.2 124 36.3
BcaC01g05525 Brassica carinata HOM05D000111 ORTHO05D001475 5.2e-11 70.5 124 35.5
C03p25360 Brassica napus HOM05D000111 ORTHO05D001475 5.2e-11 70.5 124 35.5
BolC3t14930H Brassica oleracea HOM05D000111 ORTHO05D001475 5.2e-11 70.5 124 35.5
AT2G35250 Arabidopsis thaliana HOM05D000111 ORTHO05D001475 6.8e-11 70.1 122 34.4
BolC4t27903H Brassica oleracea HOM05D000111 ORTHO05D001475 8.9e-11 69.7 121 35.5
A03p21140 Brassica napus HOM05D000111 ORTHO05D001475 3.4e-10 67.8 122 34.4
Carub.0004s1695 Capsella rubella HOM05D000111 ORTHO05D001475 4.4e-10 67.4 124 34.7
Carub.0004s1886 Capsella rubella HOM05D000111 ORTHO05D001475 4.4e-10 67.4 124 33.9
AL4G35260 Arabidopsis lyrata HOM05D000111 ORTHO05D001475 7.5e-10 66.6 124 33.1
AL4G35290 Arabidopsis lyrata HOM05D000111 ORTHO05D001475 7.5e-10 66.6 124 33.1
A03p21450 Brassica napus HOM05D000111 ORTHO05D001475 7.5e-10 66.6 124 34.7
BraA03t11381Z Brassica rapa HOM05D000111 ORTHO05D001475 7.5e-10 66.6 124 34.7
BcaB01g03707 Brassica carinata HOM05D000111 ORTHO05D001475 9.8e-10 66.2 124 34.7
AL4G31280 Arabidopsis lyrata HOM05D000603 ORTHO05D003510 2.9e-09 64.7 121 32.2
CARHR129410 Cardamine hirsuta HOM05D000111 ORTHO05D001475 2.9e-09 64.7 124 35.5
Carub.0004s0763 Capsella rubella HOM05D000111 ORTHO05D001475 3.7e-09 64.3 124 32.3
Carub.0004s0868 Capsella rubella HOM05D000111 ORTHO05D001475 3.7e-09 64.3 124 33.1
CARHR133760 Cardamine hirsuta HOM05D000111 ORTHO05D001475 4.9e-09 63.9 124 32.3
AT2G27320 Arabidopsis thaliana HOM05D000111 ORTHO05D001475 8.3e-09 63.2 48 60.4
BcaC02g11973 Brassica carinata HOM05D000111 ORTHO05D001475 1.4e-08 62.4 106 34.9
Carub.0187s0001 Capsella rubella HOM05D000111 ORTHO05D001475 2.4e-08 61.6 124 29.8
Carub.0004s0869 Capsella rubella HOM05D000111 ORTHO05D001475 3.2e-08 61.2 48 58.3
BcaC02g11972 Brassica carinata HOM05D000111 ORTHO05D001475 9.2e-08 59.7 117 32.5
C04p09410 Brassica napus HOM05D000111 ORTHO05D001475 9.2e-08 59.7 117 32.5
BolC4t22545H Brassica oleracea HOM05D000111 ORTHO05D001475 1.2e-07 59.3 117 32.5
Atru.chr11.876 Acer truncatum HOM05D000111 ORTHO05D001475 1.6e-07 58.9 49 55.1
A05p07760 Brassica napus HOM05D000111 ORTHO05D001475 1.6e-07 58.9 117 32.5
BraA05t19745Z Brassica rapa HOM05D000111 ORTHO05D001475 1.6e-07 58.9 117 32.5
A05p07750 Brassica napus HOM05D000111 ORTHO05D001475 2.7e-07 58.2 44 59.1
BraA05t19744Z Brassica rapa HOM05D000111 ORTHO05D001475 2.7e-07 58.2 44 59.1
BcaC06g34263 Brassica carinata HOM05D000111 ORTHO05D001475 3.5e-07 57.8 44 59.1
THA.LOC104806703 Tarenaya hassleriana HOM05D000111 ORTHO05D001475 4.6e-07 57.4 51 45.1
Haze_08251 Corylus avellana HOM05D000111 ORTHO05D001475 7.8e-07 56.6 41 56.1
HanXRQChr12g0354921 Helianthus annuus HOM05D000111 ORTHO05D000134 7.8e-07 56.6 46 58.7
HanXRQChr12g0354941 Helianthus annuus HOM05D000111 ORTHO05D000134 1.7e-06 55.5 46 58.7
HanXRQChr12g0354951 Helianthus annuus HOM05D000111 ORTHO05D000134 1.7e-06 55.5 46 58.7
ECA233G5669 Erigeron canadensis HOM05D000111 ORTHO05D000134 2.3e-06 55.1 42 52.4
BraA05t19742Z Brassica rapa HOM05D000111 ORTHO05D001475 5.1e-06 53.9 48 52.1
BolC4t22544H Brassica oleracea HOM05D000111 ORTHO05D001475 6.6e-06 53.5 49 51.0
ECA233G1653 Erigeron canadensis HOM05D000560 ORTHO05D000417 6.6e-06 53.5 42 54.8
TPR.G3938 Trifolium pratense HOM05D000111 ORTHO05D001475 6.6e-06 53.5 41 56.1
TAR636G1607 Trochodendron aralioides HOM05D000111 ORTHO05D001475 6.6e-06 53.5 47 46.8
Sp4g26300 Schrenkiella parvula HOM05D000111 ORTHO05D000134 8.6e-06 53.1 41 61.0


User provided reference genes

Program Settings