Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.7e-51 205.7 101 100.0
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.7e-51 205.7 101 100.0
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 1.9e-50 202.2 101 97.0
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 1.9e-50 202.2 101 97.0
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 1.9e-50 202.2 101 97.0
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 1.9e-47 192.2 101 95.0
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 7.9e-41 170.2 107 81.3
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 5.3e-37 157.5 107 77.6
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 1.6e-33 146.0 107 71.0
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 2.1e-33 145.6 107 69.2
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 6.1e-33 144.1 107 70.1
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 1.0e-32 143.3 107 70.1
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 1.0e-32 143.3 107 70.1
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 1.0e-32 143.3 107 70.1
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 1.0e-32 143.3 107 70.1
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 1.0e-32 143.3 107 70.1
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 1.3e-32 142.9 107 68.2
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 6.7e-32 140.6 107 69.2
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 9.7e-31 136.7 109 68.8
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 6.9e-21 104.0 130 46.9
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 1.4e-18 96.3 103 58.3
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.2e-11 72.4 104 38.5
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 8.5e-11 70.5 112 37.5
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 8.5e-11 70.5 105 39.0
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 4.2e-10 68.2 114 36.8
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 4.2e-10 68.2 102 36.3
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 4.2e-10 68.2 114 36.0
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 5.5e-10 67.8 107 38.3
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 1.6e-09 66.2 114 36.0
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 1.6e-09 66.2 104 43.3
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 2.1e-09 65.9 120 35.8
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 2.1e-09 65.9 115 33.9
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 3.6e-09 65.1 101 38.6
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 4.7e-09 64.7 112 37.5
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 4.7e-09 64.7 107 41.1
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 6.1e-09 64.3 110 38.2
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.0e-08 63.5 113 38.1
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.4e-08 63.2 120 35.0
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.4e-08 63.2 101 39.6
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.4e-08 63.2 113 37.2
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.8e-08 62.8 110 37.3
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.8e-08 62.8 110 37.3
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.8e-08 62.8 111 35.1
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 3.0e-08 62.0 129 33.3
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 3.0e-08 62.0 112 40.2
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 5.2e-08 61.2 109 36.7
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 5.2e-08 61.2 129 37.2
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 5.2e-08 61.2 120 35.0
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 5.2e-08 61.2 104 38.5
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 6.7e-08 60.8 75 45.3
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 6.7e-08 60.8 67 47.8
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 6.7e-08 60.8 90 40.0
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 8.8e-08 60.5 119 33.6
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.1e-07 60.1 126 34.9
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 1.1e-07 60.1 115 33.0
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 1.5e-07 59.7 90 40.0
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 1.5e-07 59.7 90 40.0
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 1.5e-07 59.7 112 41.1
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.5e-07 59.7 108 39.8
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 2.6e-07 58.9 106 41.5
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.6e-07 58.9 66 47.0
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 3.3e-07 58.5 128 32.0
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 5.7e-07 57.8 110 34.5
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 7.5e-07 57.4 112 38.4
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 7.5e-07 57.4 104 37.5
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 7.5e-07 57.4 64 45.3
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 7.5e-07 57.4 110 35.5
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 9.7e-07 57.0 122 36.1
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 1.3e-06 56.6 112 38.4
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.3e-06 56.6 100 36.0
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 1.3e-06 56.6 115 35.7
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 1.7e-06 56.2 104 37.5
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 1.7e-06 56.2 108 35.2
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.7e-06 56.2 121 33.1
Sabra01G0110900 Salix brachista HOM05D006292 ORTHO05D006110 1.7e-06 56.2 54 50.0
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 2.2e-06 55.8 117 34.2
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.2e-06 55.8 68 44.1
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.2e-06 55.8 68 44.1
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.2e-06 55.8 68 44.1
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 2.2e-06 55.8 122 35.2
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 3.7e-06 55.1 113 36.3
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 3.7e-06 55.1 113 32.7
Gohir.D08G177000 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.8e-06 54.7 107 37.4
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 6.3e-06 54.3 60 46.7
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 6.3e-06 54.3 77 40.3
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 6.3e-06 54.3 111 37.8
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 6.3e-06 54.3 109 33.0
Gorai.004G184900 Gossypium raimondii HOM05D006292 ORTHO05D006110 8.2e-06 53.9 107 37.4
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 8.2e-06 53.9 69 40.6


User provided reference genes

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