Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 1.2e-261 906.0 460 100.0
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 2.9e-114 416.4 221 97.7
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 3.9e-111 406.0 223 94.2
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.1e-110 404.4 224 96.0
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 5.3e-108 395.6 221 95.0
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 3.4e-99 366.3 225 87.6
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.2e-96 357.8 219 84.9
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.2e-96 357.8 219 84.9
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 2.7e-96 356.7 220 85.0
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 5.1e-95 352.4 220 85.5
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 6.7e-95 352.1 218 85.8
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 1.9e-94 350.5 218 84.9
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 9.0e-92 341.7 218 83.0
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 1.2e-91 341.3 221 82.4
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.6e-88 330.9 223 81.6
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 8.7e-87 325.1 223 80.3
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 4.8e-85 319.3 225 79.1
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 1.3e-74 284.6 224 69.2
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 5.0e-74 282.7 195 75.9
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 6.5e-74 282.3 223 68.2
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.1e-73 281.6 216 69.4
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.9e-73 280.8 194 75.8
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.9e-73 280.8 242 63.2
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 5.5e-73 279.3 192 76.0
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.6e-72 277.7 223 66.4
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.6e-72 277.7 194 74.2
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 2.1e-72 277.3 216 68.1
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 3.6e-72 276.6 191 73.3
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 4.6e-72 276.2 192 73.4
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 6.1e-72 275.8 218 67.4
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 7.9e-72 275.4 191 72.8
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 7.9e-72 275.4 190 72.6
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.0e-71 275.0 222 65.8
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 1.4e-71 274.6 216 67.6
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 1.4e-71 274.6 193 71.5
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.4e-71 274.6 193 71.5
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.4e-71 274.6 193 71.5
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 1.8e-71 274.2 214 68.2
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.8e-71 274.2 217 66.8
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 2.3e-71 273.9 210 65.7
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 2.3e-71 273.9 191 72.8
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 2.3e-71 273.9 223 65.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.0e-71 273.5 218 67.0
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.9e-71 273.1 193 71.5
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.9e-71 273.1 193 71.5
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 5.1e-71 272.7 217 66.8
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 5.1e-71 272.7 210 67.6
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 6.7e-71 272.3 193 70.5
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 6.7e-71 272.3 204 70.1
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 6.7e-71 272.3 220 65.0
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 8.8e-71 271.9 194 72.2
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 8.8e-71 271.9 191 73.3
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.1e-70 271.6 218 67.4
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 1.5e-70 271.2 210 67.1
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.0e-70 270.8 223 65.5
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 3.3e-70 270.0 209 67.5
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 3.3e-70 270.0 232 64.7
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 3.3e-70 270.0 191 71.2
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 3.3e-70 270.0 217 65.4
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 4.4e-70 269.6 220 65.5
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 5.7e-70 269.2 210 66.7
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.7e-70 269.2 217 65.9
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.7e-70 269.2 217 65.9
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 7.4e-70 268.9 198 70.2
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 7.4e-70 268.9 227 65.2
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 7.4e-70 268.9 193 71.5
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 7.4e-70 268.9 175 76.6
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 9.7e-70 268.5 192 73.4
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.3e-69 268.1 191 73.3
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 1.3e-69 268.1 191 71.7
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.3e-69 268.1 192 71.9
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.2e-69 267.3 190 72.6
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 4.8e-69 266.2 192 71.4
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 4.8e-69 266.2 215 67.0
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 4.8e-69 266.2 205 66.8
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 8.2e-69 265.4 179 74.9
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 8.2e-69 265.4 215 67.4
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 8.2e-69 265.4 192 72.9
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 8.2e-69 265.4 193 70.5
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.1e-68 265.0 191 72.8
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 1.1e-68 265.0 233 61.4
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.4e-68 264.6 215 65.6
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 1.8e-68 264.2 191 71.2
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 1.8e-68 264.2 191 70.7
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.8e-68 264.2 214 65.4
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.1e-68 263.5 192 69.3
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 4.1e-68 263.1 192 69.8
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 5.3e-68 262.7 216 65.7
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 6.9e-68 262.3 191 70.7
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 9.1e-68 261.9 185 73.0
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.5e-67 261.2 192 68.8
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.0e-67 260.8 217 63.6
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 2.0e-67 260.8 188 72.3
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 5.9e-67 259.2 208 67.8
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.3e-66 258.1 210 64.8
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 1.7e-66 257.7 217 66.4
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 3.8e-66 256.5 190 67.4
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 6.5e-66 255.8 191 68.1
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 1.1e-65 255.0 222 61.7
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.1e-65 255.0 198 69.2
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.4e-65 254.6 191 68.6
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 2.5e-65 253.8 180 70.0
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 7.2e-65 252.3 217 61.8
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 4.7e-64 249.6 218 61.0
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.4e-63 248.1 203 65.0
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 1.8e-63 247.7 192 67.7
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 6.7e-63 245.7 162 75.9
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.5e-62 244.6 190 66.3
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 7.4e-62 242.3 222 61.7
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 8.2e-61 238.8 212 59.0
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.4e-60 238.0 234 60.7
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 5.3e-60 236.1 222 59.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 5.9e-59 232.6 160 71.2
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 1.7e-58 231.1 210 61.9
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 3.7e-53 213.4 212 55.2
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 4.8e-53 213.0 111 94.6
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.5e-46 191.4 121 74.4
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 2.6e-46 190.7 121 76.9
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 4.4e-46 189.9 120 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 8.6e-42 175.6 179 50.8
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.3e-41 173.7 146 57.5
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.0e-39 167.2 188 52.7
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 3.7e-37 160.2 153 57.5
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 2.4e-36 157.5 149 51.7
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 7.0e-36 156.0 197 44.7
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.6e-34 149.1 182 46.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 7.0e-28 129.4 173 42.8
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 4.3e-25 120.2 173 37.0
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 4.6e-19 100.1 68 70.6
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 1.2e-14 85.5 152 30.3
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 5.4e-12 76.6 124 46.0
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 5.1e-10 70.1 216 30.1
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.5e-09 67.8 114 41.2
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.8e-08 64.3 109 42.2


User provided reference genes

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